1 |
= |
genetic |
codon |
viral |
CC |
sars-cov-2 |
family |
transitions |
fidelity |
DC-SIGN |
MHC |
OAS1 |
- |
PITX2 |
arthritis |
2 |
risk |
diversity |
usage |
viruses |
strains |
sites |
psgs |
mutations |
replication |
KD |
class |
influenza |
online |
missense |
chromosome |
3 |
susceptibility |
populations |
bias |
RNA |
QTL |
coronavirus |
domains |
single |
reversion |
L-SIGN |
cheetahs |
cancer |
online version |
VWD |
rats |
4 |
polymorphisms |
human |
codons |
host |
mouse |
substitutions |
AP2 |
probes |
mutagenesis |
DC-SIGNR |
alleles |
prostate |
supplementary |
IA |
PIA |
5 |
infection |
genes |
synonymous |
rna viruses |
cross |
amino |
gene |
snps |
quasispecies |
tuberculosis |
II |
mxa |
SUPPLEMENTARY |
t-cell |
IG |
6 |
association |
immune |
synonymous codon |
fitness |
inbred |
amino acid |
gene family |
protein |
protease |
VNTR |
IBV |
prostate cancer |
FIP |
VP-1 |
acute‐phase |
7 |
patients |
selective |
patterns |
rates |
lines |
coronaviruses |
CEACAM1 |
deleterious |
mutant |
HIV-1 |
histocompatibility |
IFITM3 |
material |
intron |
DA |
8 |
associated with |
major |
composition |
mutations |
collaborative |
acid |
PSG |
bp |
exon(- |
repeat |
species |
rs2660 |
version |
il-12rβ1 |
CIA |
9 |
allele |
genetic diversity |
analysis |
recombination |
trait |
spike |
lineages |
n-calls |
lethal |
neck |
animals |
GG |
article |
ACE2 |
chromosome 12 |
10 |
controls |
observed |
RSCU |
evolve |
founder |
COVID-19 |
primate |
conservative |
virus |
dendritic |
cynomolgus |
rs10774671 |
users |
deficiency |
HBV |
11 |
TB |
regions |
virus |
drift |
mice |
substitution |
hemoglobin |
acid |
wild-type |
c-type |
shared |
ddx1 |
authorized |
heterozygotes |
SLC10A1 |
12 |
SARS |
studies |
pattern |
hosts |
genetic |
synonymous |
receptors |
epistasis |
spectra |
seronegative |
madagascar |
mrna |
MATERIAL |
loop |
ivdrv |
13 |
snps |
important |
relative |
mutation |
collaborative cross |
human |
CEA |
deletions |
nucleoside |
CAL |
cheetah |
antiviral |
ELECTRONIC |
HLA-B∗46:01 |
IGK |
14 |
significant |
pathogens |
ENC |
processes |
resistance |
respiratory |
primates |
STEC |
exon-aa |
IVIG |
macaques |
MEDI-565 |
cats |
type 1 vwd |
heavy |
15 |
SNP |
pathogen |
natural selection |
range |
strain |
driving |
positive |
O157 |
mhv-exon(- |
mycobacterium |
mafa-dqb1 |
ERCC1 |
bovine |
IL-6 |
locus |
16 |
genotype |
vaccine |
content |
evolutionary |
weight |
adaptation |
members |
insertions |
fitness |
CISH |
% |
ifitm3 gene |
COPD |
recessive |
loci |
17 |
MBL |
african |
HAV |
rate |
drug |
polymorphic sites |
bacterial |
sequence |
WT |
dectin-1 |
captive |
A(H7N9 |
BRDC |
inheritance |
IGL |
18 |
chinese |
analyses |
ZIKV |
novo |
mapping |
nucleocapsid |
diversification |
coding |
RNA |
NPC |
comoros |
diapause |
CPV |
−174 |
uveitis |
19 |
study |
sequence |
pressure |
de |
quantitative |
capsid |
selection |
50 |
mosquito |
rs4804803 |
loci |
virus-specific |
mild flu |
BEN |
ivdrvs |
20 |
genotypes |
innate |
natural |
replication |
traits |
synonymous substitution |
vertebrate |
null |
extinction |
mycobacterium tuberculosis |
monkeys |
synthetase |
flu |
peacock |
gap |
21 |
% |
infectious |
values |
evolution |
tissues |
syndrome |
mammalian |
breeds |
WNV |
M. |
captive cheetahs |
rs3741981 |
IL-4 |
glaucoma |
IGH |
22 |
healthy |
infections |
mutation pressure |
clonal |
bleomycin |
ratio |
IFITM |
mtdna |
random |
hiv-1 infection |
major histocompatibility complex |
caucasians |
virus-induced encephalitis |
subjects |
substrains |
23 |
95 |
variants |
genomes |
genetic drift |
identify |
acute |
concerted |
complementary |
exoribonuclease |
CD40 |
camels |
rs3888188 |
encephalitis |
variants |
congenic |
24 |
METHODS |
data |
synonymous codon usage |
ability |
genetically |
ratg13 |
gene conversion |
TLR4 |
P250 |
adhesion |
mafa-b |
H1N1 |
fcov |
ICH |
CH |
25 |
CI |
variation |
GC |
correlated |
disease |
2019 |
N1 |
amino |
mutagenic |
formation |
molecules |
genotype |
HN |
POAG |
12 |
26 |
haplotype |
system |
CUB |
viral fitness |
power |
dn/ds |
CEACAM |
hybridization |
recoded |
promoter |
cynomolgus macaques |
rubella |
manillensis |
BC |
E3 |
27 |
increased |
acting |
shaping |
mechanisms |
resource |
urban |
PARP |
actual |
HIV-1 |
longevity |
amyloidosis |
expression |
h. manillensis |
APN |
JIA |
28 |
frequency |
provide |
PCV |
find |
distinct |
X4 |
expansion |
tag |
increased |
CD209 |
cruzi |
2009 |
calves |
IL12RB1 |
serine-11 |
29 |
cases |
HLA |
effective |
de novo |
chromatin |
persistence |
families |
specificity |
attenuation |
lectins |
yi |
IFITM1 |
IL-10 |
alveolar |
aeruginosa |
30 |
AA |
revealed |
ttsuv1 |
genotypes |
drug resistance |
R5 |
recognition |
domestic |
cov |
CXCL-10 |
DRA |
tumors |
feline |
fetuin-a |
igm |
31 |
age |
including |
correspondence |
speed |
oas1b |
sylvatic |
evolution |
stability |
rdrp |
non-integrin |
camelus |
enzyme |
H. |
compound |
genetic control |
32 |
MBL2 |
genomic |
plot |
viral evolution |
quantitative trait loci |
wuhan |
paired |
single nucleotide polymorphisms |
passage |
dc-sign gene |
differentiation |
CEA |
rs1800872 |
APOB |
chromosomes |
33 |
gene |
interactions |
genes |
difficult |
differences |
BJ202 |
evolutionary |
effects |
mutant spectra |
grabbing |
inbreeding |
interferon |
diabetes |
HT |
chronic |
34 |
genotyped |
limited |
species |
viral populations |
F1 |
synonymous substitutions |
motifs |
mitochondrial |
MAX |
tandem |
16 |
rs2071430 |
f genes |
MAF |
erosive |
35 |
significantly |
africa |
selection |
infect |
metabolism |
HEV |
conversion |
probe |
vivo |
m. tuberculosis |
haplotypes |
HA |
rs2227288 |
0.17 |
BCL1.B1 |
36 |
variants |
extensive |
compositional |
interference |
scb-1 |
force |
rodent |
mutation |
competitive |
l-sign gene |
mhc class i |
promoter |
birman |
epi4k |
ig |
37 |
population |
study |
correspondence analysis |
dna viruses |
highlight |
similar |
proteins |
microarrays |
high-fidelity |
kawasaki |
MHC-B |
promoter activity |
il-4 rs2227288 |
hssncs |
RA |
38 |
found |
sequences |
PEDV |
show |
epilepsy |
frequencies |
species |
tp53 gene |
activity |
anti-inflammatory |
historical |
splice variant |
BRD |
autosomal |
germline |
39 |
sample |
number |
CAI |
selection |
variation |
higher |
photolyases |
adace2 |
analogues |
seropositive |
introgression |
melanogaster |
virus-induced |
parents |
breaks |
40 |
pulmonary |
review |
ttsuv2 |
CTV |
CB4856 |
acute respiratory syndrome coronavirus 2 |
CEACAM/PSG |
transversions |
high-fidelity replication |
kawasaki disease |
HLA-A |
antiviral genes |
kosher |
seroconversion |
chromosome 4 |
41 |
disease |
importance |
comparative analysis |
negatively |
weight loss |
mers-cov |
CEACAM28 |
sprofiler |
MT-4 |
IPA |
rna-binding |
OAS-1 |
holsteins |
rare |
hbv‐related |
42 |
polymorphism |
role |
index |
compensation |
loci |
circulating |
ceacams |
nucleotide |
nucleoside analogs |
CLEC5A |
congeners |
UC |
bovinehd |
type |
VDJ |
43 |
carriers |
homologous |
dinucleotide |
phi6 |
polygenic |
2019-ncov |
simian |
predicted |
2C |
BCG |
mafa-drb |
G/A |
new mexico |
CLEC4 |
compatibility |
44 |
han |
design |
base composition |
error |
parasite |
hcov-oc43 |
cytoplasmic |
% |
hiv-1 protease |
nonintegrin |
chagas disease |
african-americans |
dairy |
males |
igg1 |
45 |
genetic |
population |
MARV |
model |
liver weight |
pangolin |
carcinoembryonic |
Q67R |
robustness |
cells |
retrovirus |
measles |
california |
male |
contigs |
46 |
0.001 |
ASFV |
codon bias |
evolutionary forces |
seizure |
cross-species |
GC-C |
amino-acid |
competitive fitness |
region |
class i |
hace2 |
CONCLUSIONS |
NPG |
congenic strains |
47 |
protective |
homologous recombination |
comprehensive analysis |
bacteriophage |
imputation |
astrovirus |
domain |
GSEQ |
genome replication |
polymorphism |
conservation |
rs1131454 |
genomic |
IOP |
ab |
48 |
CR1 |
genomes |
thv |
adaptability |
founder strains |
EMC |
receptor |
3′ |
analogs |
individuals |
variation |
ST3GAL1 |
IL-13 |
versus |
lambda |
49 |
IFNG |
target |
mutational pressure |
wildtype |
mouse models |
a. coronavirus |
CEACAM32 |
sensitive |
deoptimized |
−336 |
individuals |
activity |
fifng |
clinical |
chain |
50 |
serum |
genome |
DEV |
virus |
efficacy |
values |
IR-IFITM |
breed |
in vivo |
DF |
generations |
TMPRSS2 |
subgroup |
heterozygous |
germ-line |