| 1 |
Graepel_2017 |
Proofreading-deficient coronaviruses adapt over long-term passage for increased fidelity and fitness without reversion of exoribonuclease-inactivating mutations |
Kevin W. Graepel; Xiaotao Lu; James Brett Case; Nicole R. Sexton; Everett Clinton Smith; Mark R. Denison |
2017 |
2017-08-11 |
BioRxiv |
N |
|
|
10.1101/175562 |
vqtx98xm |
0.975829 |
|
Graepel_2017 |
| 2 |
Graepel_2017 |
Proofreading-Deficient Coronaviruses Adapt for Increased Fitness over Long-Term Passage without Reversion of Exoribonuclease-Inactivating Mutations |
Graepel, Kevin W.; Lu, Xiaotao; Case, James Brett; Sexton, Nicole R.; Smith, Everett Clinton; Denison, Mark R. |
2017 |
2017-11-07 |
COMM-USE |
N |
PMC5676041 |
29114026.0 |
10.1128/mbio.01503-17 |
qeltdch7 |
0.962817 |
|
Graepel_2017 |
| 3 |
Agudo_2016 |
Involvement of a joker mutation in a polymerase-independent lethal mutagenesis escape mechanism |
Agudo, Rubén; de la Higuera, Ignacio; Arias, Armando; Grande-Pérez, Ana; Domingo, Esteban |
2016 |
2016-07-31 |
PMC |
N |
PMC7111656 |
27136067.0 |
10.1016/j.virol.2016.04.023 |
k80t1ai1 |
0.885088 |
|
|
| 4 |
Levi_2010 |
Fidelity Variants of RNA Dependent RNA Polymerases Uncover an Indirect, Mutagenic Activity of Amiloride Compounds |
Levi, Laura I.; Gnädig, Nina F.; Beaucourt, Stéphanie; McPherson, Malia J.; Baron, Bruno; Arnold, Jamie J.; Vignuzzi, Marco |
2010 |
2010-10-28 |
COMM-USE |
N |
PMC2965762 |
21060812.0 |
10.1371/journal.ppat.1001163 |
fnvwcebr |
0.834321 |
|
|
| 5 |
Graepel_2019 |
Fitness barriers limit reversion of a proofreading-deficient coronavirus |
Kevin W. Graepel; Maria L. Agostini; Xiaotao Lu; Nicole R. Sexton; Mark R. Denison |
2019 |
2019-04-26 |
BioRxiv |
N |
|
|
10.1101/618249 |
8pr10j88 |
0.783565 |
|
|
| 6 |
Rozen-Gagnon_2014 |
Alphavirus Mutator Variants Present Host-Specific Defects and Attenuation in Mammalian and Insect Models |
Rozen-Gagnon, Kathryn; Stapleford, Kenneth A.; Mongelli, Vanesa; Blanc, Hervé; Failloux, Anna-Bella; Saleh, Maria-Carla; Vignuzzi, Marco |
2014 |
2014-01-16 |
COMM-USE |
N |
PMC3894214 |
24453971.0 |
10.1371/journal.ppat.1003877 |
pa0p5dif |
0.733905 |
|
|
| 7 |
Nevot_2018 |
HIV-1 Protease Evolvability is Affected by Synonymous Nucleotide Recoding |
Maria Nevot; Ana Jordan-Paiz; Glòria Martrus; Cristina Andrés; Damir García-Cehic; Josep Gregori; Sandra Franco; Josep Quer; Miguel Angel Martinez |
2018 |
2018-05-07 |
BioRxiv |
N |
|
|
10.1101/315366 |
32b5xysw |
0.717758 |
|
|
| 8 |
Martrus_2013 |
Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture |
Martrus, Gloria; Nevot, Maria; Andres, Cristina; Clotet, Bonaventura; Martinez, Miguel Angel |
2013 |
2013-07-25 |
COMM-USE |
N |
PMC3726367 |
23885919.0 |
10.1186/1742-4690-10-78 |
9cleavkv |
0.650677 |
|
|
| 9 |
Lloyd_2014 |
The High Cost of Fidelity |
Lloyd, Sarah B.; Kent, Stephen J.; Winnall, Wendy R. |
2014 |
2014-01-01 |
PMC |
N |
PMC3887412 |
24180375.0 |
10.1089/aid.2013.0153 |
tzc12gzh |
0.623706 |
Smith_2012 |
|
| 10 |
Smith_2012 |
Implications of altered replication fidelity on the evolution and pathogenesis of coronaviruses |
Smith, Everett C; Denison, Mark R |
2012 |
2012-10-31 |
PMC |
N |
PMC7102773 |
22857992.0 |
10.1016/j.coviro.2012.07.005 |
ac38yvcn |
0.595803 |
|
|
| 11 |
Bordería_2015 |
Fidelity Variants and RNA Quasispecies |
Bordería, Antonio V.; Rozen-Gagnon, Kathryn; Vignuzzi, Marco |
2015 |
2015-10-25 |
PMC |
N |
PMC7121553 |
26499340.0 |
10.1007/82_2015_483 |
v9gabn1a |
0.539538 |
|
|
| 12 |
Ojosnegros_2008 |
Topology of evolving, mutagenized viral populations: quasispecies expansion, compression, and operation of negative selection |
Ojosnegros, Samuel; Agudo, Rubén; Sierra, Macarena; Briones, Carlos; Sierra, Saleta; González- López, Claudia; Domingo, Esteban; Cristina, Juan |
2008 |
2008-07-17 |
COMM-USE |
N |
PMC2515104 |
18637173.0 |
10.1186/1471-2148-8-207 |
w33k8pdu |
0.515276 |
Liu_Y_2011, Gu_W_2004, Zhang_2014 |
Zhao_2018, Somovilla_2019 |
| 13 |
Domingo_2008 |
CHAPTER 4 Viral Quasispecies: Dynamics, Interactions, and Pathogenesis * * Dedicated to Manfred Eigen on the occasion of his 80th birthday, for the insights that his pioneer studies have represented for virology. |
Domingo, Esteban; Escarmís, Cristina; Menéndez-Arias, Luis; Perales, Celia; Herrera, Mónica; Novella, Isabel S.; Holland, John J. |
2008 |
2008-12-31 |
PMC |
N |
PMC7149507 |
|
10.1016/b978-0-12-374153-0.00004-7 |
n57lfj6u |
0.487994 |
|
Domingo_1998 |
| 14 |
Parera_2006 |
HIV-1 Protease Catalytic Efficiency Effects Caused by Random Single Amino Acid Substitutions |
Parera, Mariona; Fernàndez, Guerau; Clotet, Bonaventura; Martínez, Miguel Angel |
2006 |
2006-11-07 |
PMC |
N |
PMC7107532 |
17090696.0 |
10.1093/molbev/msl168 |
8eian8tz |
0.484961 |
Gu_W_2004 |
|
| 15 |
Van_Slyke_2015 |
Sequence-Specific Fidelity Alterations Associated with West Nile Virus Attenuation in Mosquitoes |
Van Slyke, Greta A.; Arnold, Jamie J.; Lugo, Alex J.; Griesemer, Sara B.; Moustafa, Ibrahim M.; Kramer, Laura D.; Cameron, Craig E.; Ciota, Alexander T. |
2015 |
2015-06-26 |
COMM-USE |
N |
PMC4482725 |
26114757.0 |
10.1371/journal.ppat.1005009 |
o5eoxqu8 |
0.442175 |
|
|
| 16 |
Domingo_2020 |
Chapter 9 Trends in antiviral strategies |
Domingo, Esteban |
2020 |
2020-12-31 |
PMC |
N |
PMC7153320 |
|
10.1016/b978-0-12-816331-3.00009-x |
e6ooqmga |
0.439248 |
|
|
| 17 |
Domingo_2006 |
Viruses as Quasispecies: Biological Implications |
Domingo, E.; Martín, V.; Perales, C.; Grande-Pérez, A.; García-Arriaza, J.; Arias, A. |
2006 |
2006-01-01 |
PMC |
N |
PMC7120838 |
16568896.0 |
10.1007/3-540-26397-7_3 |
cubh9jxc |
0.398526 |
|
Domingo_1998 |
| 18 |
Malone_2006 |
Glia Expression of MHC During CNS Infection by Neurotropic Coronavirus |
Malone, Karen E.; Ramakrishna, Chandran; Gonzalez, J.-M.; Stohlman, Stephan A.; Bergmann, Cornelia C. |
2006 |
2006-01-01 |
PMC |
N |
PMC7123808 |
17037595.0 |
10.1007/978-0-387-33012-9_99 |
2d7zogi9 |
0.355367 |
|
|