Topic 08 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 47 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Stoltzfus_2015 On the Causes of Evolutionary Transition:Transversion Bias Stoltzfus, Arlin; Norris, Ryan W. 2015 2015-11-25 PMC N PMC7107541 26609078.0 10.1093/molbev/msv274 9zvyu6ly 0.993901 Gu_W_2004, Wu_G_2003 Stoltzfus_2015, Somovilla_2019, Parera_2006
2 Stoltzfus_2015 On the causes of evolutionary transition:transversion bias Arlin Stoltzfus; Ryan W. Norris 2015 2015-09-28 BioRxiv N 10.1101/027722 4xocqn6o 0.993813 Gu_W_2004, Wu_G_2003 Stoltzfus_2015, Somovilla_2019, Parera_2006
3 Zamzami_2011 Insights into N-calls of mitochondrial DNA sequencing using MitoChip v2.0 Zamzami, Mazin A; Price, Gareth R; Taylor, Robert W; Blakely, Emma L; Oancea, Iulia; Bowling, Francis; Duley, John A 2011 2011-10-20 COMM-USE N PMC3208482 22011414.0 10.1186/1756-0500-4-426 zk74rl6z 0.942435 Karaman_2005 Burger_2004
4 Kozaki_2007 Comparison of two acetylcholinesterase gene cDNAs of the lesser mealworm, Alphitobius diaperinus, in insecticide susceptible and resistant strains Kozaki, Toshinori; Kimmelblatt, Brian A.; Hamm, Ronda L.; Scott, Jeffrey G. 2007 2007-12-28 PMC N PMC7159712 18163527.0 10.1002/arch.20229 yck1t3pp 0.863930
5 Yan_S_2009 Mutation patterns in human α-galactosidase A Yan, Shaomin; Wu, Guang 2009 2009-05-26 PMC N PMC7088632 19468850.0 10.1007/s11030-009-9158-4 7floluv1 0.835641
6 Karaman_2005 Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays Karaman, Mazen W.; Groshen, Susan; Lee, Chi-Chiang; Pike, Brian L.; Hacia, Joseph G. 2005 2005-02-18 PMC N PMC549431 15722479.0 10.1093/nar/gni034 bbvxu8op 0.774331 Tan_J_2009
7 Fan_Y_2007 A missense polymorphism in porcine interferon-γ cDNA affects antiviral activity of the protein variant Fan, Yi-Hsin; Chow, Kuan-Chih; Huang, San-Yuan; Chi, Lang-Ming; Huang, Chienjin; Chiou, Shiow-Her 2007 2007-07-31 PMC N PMC7112673 17416419.0 10.1016/j.molimm.2007.02.029 8qvhu3hd 0.703911
8 Whitney_2019 Breed-specific variations in the coding region of toll-like receptor 4 in the domestic cat Whitney, J.; Haase, B.; Beatty, J.; Barrs, V.R. 2019 2019-03-31 PMC N PMC7126157 30885307.0 10.1016/j.vetimm.2019.02.009 lcmpmx20 0.693649 Gu_W_2004, Zhang_2014, Liu_Y_2010 Hamano_2005
9 Burger_2004 Analysis of the mitochondrial genome of cheetahs (Acinonyx jubatus) with neurodegenerative disease Burger, Pamela A; Steinborn, Ralf; Walzer, Christian; Petit, Thierry; Mueller, Mathias; Schwarzenberger, Franz 2004 2004-08-18 PMC N PMC7126587 15302412.0 10.1016/j.gene.2004.05.020 4jf16fzg 0.582942 Liu_Y_2010, Gu_W_2004
10 Barreiro_2009 High-Throughput SNP Genotyping: Combining Tag SNPs and Molecular Beacons Barreiro, Luis B.; Henriques, Ricardo; Mhlanga, Musa M. 2009 2009-04-20 PMC N PMC7121513 19768600.0 10.1007/978-1-60327-411-1_17 0ke31s2a 0.547191 Tan_J_2009, Kalia_2016, Dettogni_2013
11 Tan_J_2009 Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum Tan, John C.; Patel, Jigar J.; Tan, Asako; Blain, J. Craig; Albert, Tom J.; Lobo, Neil F.; Ferdig, Michael T. 2009 2009-06-01 PMC N PMC3095972 19285129.0 10.1016/j.ygeno.2009.02.007 hlvfg1b2 0.543934 Karaman_2005 Dettogni_2013, Zhang_2006
12 Zhang_2006 Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms Zhang, Wei; Qi, Weihong; Albert, Thomas J.; Motiwala, Alifiya S.; Alland, David; Hyytia-Trees, Eija K.; Ribot, Efrain M.; Fields, Patricia I.; Whittam, Thomas S.; Swaminathan, Bala 2006 2006-06-01 None N PMC1473186 16606700.0 10.1101/gr.4759706 v4odd4pm 0.541732
13 Olson_2014 A comprehensive biophysical description of pairwise epistasis throughout an entire protein domain Olson, C. Anders; Wu, Nicholas C.; Sun, Ren 2014 2014-11-01 PMC N PMC4254498 25455030.0 10.1016/j.cub.2014.09.072 gs7infqj 0.521192 Simon-Loriere_2011, Simon-Loriere_2009 Parera_2006, Evans_2020
14 Itoyama_2005 Identification of an alternative 5′‐untranslated exon and new polymorphisms of angiotensin‐converting enzyme 2 gene: Lack of association with SARS in the Vietnamese population Itoyama, Satoru; Keicho, Naoto; Hijikata, Minako; Quy, Tran; Phi, Nguyen Chi; Long, Hoang Thuy; Ha, Le Dang; Ban, Vo Van; Matsushita, Ikumi; Yanai, Hideki; Kirikae, Fumiko; Kirikae, Teruo; Kuratsuji, Tadatoshi; Sasazuki, Takehiko 2005 2005-06-03 PMC N PMC7138097 15937940.0 10.1002/ajmg.a.30779 3bb1zuqp 0.509936 Gu_W_2004 Hamano_2005, Noguchi_2013, Wu_S_2018
15 Kalia_2016 A comprehensive in silico analysis of non-synonymous and regulatory SNPs of human MBL2 gene Kalia, Namarta; Sharma, Aarti; Kaur, Manpreet; Kamboj, Sukhdev Singh; Singh, Jatinder 2016 2016-06-21 COMM-USE N PMC4916122 27390651.0 10.1186/s40064-016-2543-4 i66vbuab 0.481020 Mo_J_2013, Chen_2015, Dettogni_2013, Liu_C_2016
16 Wu_G_2003 Prediction of amino acid pairs sensitive to mutations in the spike protein from SARS related coronavirus Wu, Guang; Yan, Shaomin 2003 2003-12-31 PMC N PMC7124255 15127935.0 10.1016/j.peptides.2003.10.008 zmqaigqf 0.412039 Gu_W_2004, Zhang_2014, Yan_S_2009
17 Parera_2006 HIV-1 Protease Catalytic Efficiency Effects Caused by Random Single Amino Acid Substitutions Parera, Mariona; Fernàndez, Guerau; Clotet, Bonaventura; Martínez, Miguel Angel 2006 2006-11-07 PMC N PMC7107532 17090696.0 10.1093/molbev/msl168 8eian8tz 0.379381 Gu_W_2004
18 Farkas_2020 Insights on early mutational events in SARS-CoV-2 virus reveal founder effects across geographical regions Carlos Farkas; Francisco Fuentes-Villalobos; Jose Luis Garrido; Jody J Haigh; María Inés Barría 2020 2020-04-12 BioRxiv Y 10.1101/2020.04.09.034462 gfwqog3x 0.375714
19 Mazumder_2015 Gaining Insights into the Codon Usage Patterns of TP53 Gene across Eight Mammalian Species Mazumder, Tarikul Huda; Chakraborty, Supriyo 2015 2015-03-25 COMM-USE N PMC4373688 25807269.0 10.1371/journal.pone.0121709 1qtqergw 0.372559 Gu_W_2004, Zhang_2014 Yi_Y_2012, Sheikh_2020, He_Q_2012, Liu_Y_2010
20 Germain_2015 Loss of the Drosophila melanogaster DEAD box protein Ddx1 leads to reduced size and aberrant gametogenesis Germain, Devon R.; Li, Lei; Hildebrandt, Matthew R.; Simmonds, Andrew J.; Hughes, Sarah C.; Godbout, Roseline 2015 2015-11-15 PMC N PMC7094483 26433063.0 10.1016/j.ydbio.2015.09.012 aa3dzmbb 0.334036
21 Zang_2017 Analysis of the codon usage of the ORF2 gene of feline calicivirus Zang, Minghui; He, Wanting; Du, Fanshu; Wu, Gongjian; Wu, Bohao; Zhou, Zhenlei 2017 2017-10-31 PMC N PMC7106028 28625542.0 10.1016/j.meegid.2017.06.013 7pflfznh 0.329650 Gu_W_2004, Zhang_2014
22 Yuhki_2008 Sequences, Annotation and Single Nucleotide Polymorphism of the Major Histocompatibility Complex in the Domestic Cat Yuhki, Naoya; Mullikin, James C.; Beck, Thomas; Stephens, Robert; O'Brien, Stephen J. 2008 2008-07-16 COMM-USE N PMC2453318 18629345.0 10.1371/journal.pone.0002674 qd2xg5tz 0.315097 Plasil_2016