| 1 |
Brady_2019 |
A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans |
Brady, Shannon C.; Zdraljevic, Stefan; Bisaga, Karol W.; Tanny, Robyn E.; Cook, Daniel E.; Lee, Daehan; Wang, Ye; Andersen, Erik C. |
2019 |
2019-06-06 |
COMM-USE |
N |
PMC6707474 |
31171655.0 |
10.1534/genetics.119.302286 |
n9bd4m0f |
0.991499 |
Brady_2019 |
Brady_2019, Evans_2020 |
| 2 |
Brady_2019 |
A nematode-specific gene underlies bleomycin-response variation in Caenorhabditis elegans |
Shannon C. Brady; Stefan Zdraljevic; Karol W. Bisaga; Robyn E. Tanny; Daniel E. Cook; Daehan Lee; Ye Wang; Erik C. Andersen |
2019 |
2019-03-01 |
BioRxiv |
N |
|
|
10.1101/565218 |
75v2qt1w |
0.951460 |
|
Brady_2019, Evans_2020 |
| 3 |
Keele_2020 |
Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation |
Keele, Gregory R.; Quach, Bryan C.; Israel, Jennifer W.; Chappell, Grace A.; Lewis, Lauren; Safi, Alexias; Simon, Jeremy M.; Cotney, Paul; Crawford, Gregory E.; Valdar, William; Rusyn, Ivan; Furey, Terrence S. |
2020 |
2020-01-21 |
None |
N |
PMC7010298 |
31961859.0 |
10.1371/journal.pgen.1008537 |
ycbpeud4 |
0.849913 |
|
Nachshon_2016, Evans_2020 |
| 4 |
Gralinski_2015 |
Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross |
Gralinski, Lisa E.; Ferris, Martin T.; Aylor, David L.; Whitmore, Alan C.; Green, Richard; Frieman, Matthew B.; Deming, Damon; Menachery, Vineet D.; Miller, Darla R.; Buus, Ryan J.; Bell, Timothy A.; Churchill, Gary A.; Threadgill, David W.; Katze, Michael G.; McMillan, Leonard; Valdar, William; Heise, Mark T.; Pardo-Manuel de Villena, Fernando; Baric, Ralph S. |
2015 |
2015-10-09 |
COMM-USE |
N |
PMC4599853 |
26452100.0 |
10.1371/journal.pgen.1005504 |
vp9d9vmp |
0.824105 |
|
Lorè_2020, Gralinski_2017, Ferris_2013 |
| 5 |
Shorter_2019 |
Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population |
Shorter, John R.; Najarian, Maya L.; Bell, Timothy A.; Blanchard, Matthew; Ferris, Martin T.; Hock, Pablo; Kashfeen, Anwica; Kirchoff, Kathryn E.; Linnertz, Colton L.; Sigmon, J. Sebastian; Miller, Darla R.; McMillan, Leonard; Pardo-Manuel de Villena, Fernando |
2019 |
2019-03-11 |
COMM-USE |
N |
PMC6505143 |
30858237.0 |
10.1534/g3.119.400039 |
oudbcvx5 |
0.816955 |
|
Srivastava_2017 |
| 6 |
Evans_2020 |
A single locus underlies variation in Caenorhabditis elegans chemotherapeutic responses |
Kathryn S. Evans; Erik C. Andersen |
2020 |
2020-03-09 |
BioRxiv |
N |
|
|
10.1101/2020.03.09.984393 |
t25skqxk |
0.809448 |
|
Brady_2019, Harper_2013, Brady_2019 |
| 7 |
Oreper_2017 |
Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders |
Oreper, Daniel; Cai, Yanwei; Tarantino, Lisa M.; de Villena, Fernando Pardo-Manuel; Valdar, William |
2017 |
2017-06-05 |
COMM-USE |
N |
PMC5473744 |
28592645.0 |
10.1534/g3.117.041491 |
hstomkk5 |
0.772675 |
|
Srivastava_2017, Shorter_2019, Aylor_2011, Graham_2017 |
| 8 |
Gu_B_2019 |
Collaborative Cross Mouse Populations as a Resource for the Study of Epilepsy |
Bin Gu; John R. Shorter; Lucy H. Williams; Timothy A. Bell; Pablo Hock; Katherine A. Dalton; Yiyun Pan; Darla R. Miller; Ginger D. Shaw; Brian C. Cooley; Benjamin D. Philpot; Fernando Pardo-Manuel de Villena |
2019 |
2019-07-15 |
BioRxiv |
N |
|
|
10.1101/690917 |
ylh8ks30 |
0.768235 |
|
Evans_2020, Lorè_2020, Gralinski_2015 |
| 9 |
Aylor_2011 |
Genetic analysis of complex traits in the emerging Collaborative Cross |
Aylor, David L.; Valdar, William; Foulds-Mathes, Wendy; Buus, Ryan J.; Verdugo, Ricardo A.; Baric, Ralph S.; Ferris, Martin T.; Frelinger, Jeff A.; Heise, Mark; Frieman, Matt B.; Gralinski, Lisa E.; Bell, Timothy A.; Didion, John D.; Hua, Kunjie; Nehrenberg, Derrick L.; Powell, Christine L.; Steigerwalt, Jill; Xie, Yuying; Kelada, Samir N.P.; Collins, Francis S.; Yang, Ivana V.; Schwartz, David A.; Branstetter, Lisa A.; Chesler, Elissa J.; Miller, Darla R.; Spence, Jason; Liu, Eric Yi; McMillan, Leonard; Sarkar, Abhishek; Wang, Jeremy; Wang, Wei; Zhang, Qi; Broman, Karl W.; Korstanje, Ron; Durrant, Caroline; Mott, Richard; Iraqi, Fuad A.; Pomp, Daniel; Threadgill, David; Pardo-Manuel de Villena, Fernando; Churchill, Gary A. |
2011 |
2011-03-15 |
None |
N |
PMC3149489 |
21406540.0 |
10.1101/gr.111310.110 |
ciqlspu9 |
0.759091 |
|
Evans_2020, Graham_2017, Doumayrou_2015, Gralinski_2015 |
| 10 |
Leist_2018 |
Giving the Genes a Shuffle: Using Natural Variation to Understand Host Genetic Contributions to Viral Infections |
Leist, Sarah R.; Baric, Ralph S. |
2018 |
2018-10-31 |
PMC |
N |
PMC7114642 |
30131185.0 |
10.1016/j.tig.2018.07.005 |
u20qtce9 |
0.729931 |
|
Gralinski_2015, Graham_2017 |
| 11 |
Doumayrou_2015 |
Mapping genetic determinants of viral traits with F ST and quantitative trait locus (QTL) approaches |
Doumayrou, Juliette; Thébaud, Gaël; Vuillaume, Florence; Peterschmitt, Michel; Urbino, Cica |
2015 |
2015-10-31 |
PMC |
N |
PMC7111638 |
26186573.0 |
10.1016/j.virol.2015.06.019 |
ky5qf9fu |
0.709609 |
|
Evans_2020, Fumagalli_2010 |
| 12 |
Keele_2019 |
Determinants of QTL Mapping Power in the Realized Collaborative Cross |
Keele, Gregory R.; Crouse, Wesley L.; Kelada, Samir N. P.; Valdar, William |
2019 |
2019-05-01 |
COMM-USE |
N |
PMC6505132 |
30914424.0 |
10.1534/g3.119.400194 |
bh2dark5 |
0.709354 |
|
Doumayrou_2015, Evans_2020, Aylor_2011, Abu‐Toamih_Atamni_2018 |
| 13 |
Green_2017 |
Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross |
Green, Richard; Wilkins, Courtney; Thomas, Sunil; Sekine, Aimee; Hendrick, Duncan M.; Voss, Kathleen; Ireton, Renee C.; Mooney, Michael; Go, Jennifer T.; Choonoo, Gabrielle; Jeng, Sophia; de Villena, Fernando Pardo-Manuel; Ferris, Martin T.; McWeeney, Shannon; Gale, Michael |
2017 |
2017-06-05 |
COMM-USE |
N |
PMC5473748 |
28592649.0 |
10.1534/g3.117.041624 |
b47t1q0z |
0.703106 |
|
|
| 14 |
Gralinski_2017 |
Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice |
Gralinski, Lisa E.; Menachery, Vineet D.; Morgan, Andrew P.; Totura, Allison L.; Beall, Anne; Kocher, Jacob; Plante, Jessica; Harrison-Shostak, D. Corinne; Schäfer, Alexandra; Pardo-Manuel de Villena, Fernando; Ferris, Martin T.; Baric, Ralph S. |
2017 |
2017-06-05 |
COMM-USE |
N |
PMC5473747 |
28592648.0 |
10.1534/g3.117.041434 |
cf453xqa |
0.684646 |
|
|
| 15 |
Nachshon_2016 |
Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains |
Nachshon, Aharon; Abu-Toamih Atamni, Hanifa J.; Steuerman, Yael; Sheikh-Hamed, Roa'a; Dorman, Alexandra; Mott, Richard; Dohm, Juliane C.; Lehrach, Hans; Sultan, Marc; Shamir, Ron; Sauer, Sascha; Himmelbauer, Heinz; Iraqi, Fuad A.; Gat-Viks, Irit |
2016 |
2016-10-05 |
COMM-USE |
N |
PMC5050206 |
27761138.0 |
10.3389/fgene.2016.00172 |
6nok20vb |
0.676896 |
Aylor_2011 |
Gralinski_2015, Lorè_2020, Evans_2020 |
| 16 |
Abu‐Toamih_Atamni_2018 |
Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice |
Abu‐Toamih Atamni, Hanifa J.; Botzman, Maya; Mott, Richard; Gat‐Viks, Irit; Iraqi, Fuad A. |
2018 |
2018-10-24 |
COMM-USE |
N |
PMC6388055 |
30891567.0 |
10.1002/ame2.12036 |
1y34xsxk |
0.663237 |
Aylor_2011 |
Lorè_2020, Gralinski_2015, Dettogni_2013, Evans_2020 |
| 17 |
Graham_2017 |
Extensive Homeostatic T Cell Phenotypic Variation within the Collaborative Cross |
Graham, Jessica B.; Swarts, Jessica L.; Mooney, Michael; Choonoo, Gabrielle; Jeng, Sophia; Miller, Darla R.; Ferris, Martin T.; McWeeney, Shannon; Lund, Jennifer M. |
2017 |
2017-11-21 |
None |
N |
PMC5728448 |
29166619.0 |
10.1016/j.celrep.2017.10.093 |
7zuufs7k |
0.661338 |
Aylor_2011 |
Gralinski_2015, Lorè_2020, Evans_2020, Ferris_2013 |
| 18 |
Srivastava_2017 |
Genomes of the Mouse Collaborative Cross |
Srivastava, Anuj; Morgan, Andrew P.; Najarian, Maya L.; Sarsani, Vishal Kumar; Sigmon, J. Sebastian; Shorter, John R.; Kashfeen, Anwica; McMullan, Rachel C.; Williams, Lucy H.; Giusti-Rodríguez, Paola; Ferris, Martin T.; Sullivan, Patrick; Hock, Pablo; Miller, Darla R.; Bell, Timothy A.; McMillan, Leonard; Churchill, Gary A.; de Villena, Fernando Pardo-Manuel |
2017 |
2017-06-06 |
COMM-USE |
N |
PMC5499171 |
28592495.0 |
10.1534/genetics.116.198838 |
41st827n |
0.597279 |
|
Graham_2017, Shorter_2019, Aylor_2011, Gralinski_2015 |
| 19 |
Ferris_2013 |
Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross |
Ferris, Martin T.; Aylor, David L.; Bottomly, Daniel; Whitmore, Alan C.; Aicher, Lauri D.; Bell, Timothy A.; Bradel-Tretheway, Birgit; Bryan, Janine T.; Buus, Ryan J.; Gralinski, Lisa E.; Haagmans, Bart L.; McMillan, Leonard; Miller, Darla R.; Rosenzweig, Elizabeth; Valdar, William; Wang, Jeremy; Churchill, Gary A.; Threadgill, David W.; McWeeney, Shannon K.; Katze, Michael G.; Pardo-Manuel de Villena, Fernando; Baric, Ralph S.; Heise, Mark T. |
2013 |
2013-02-28 |
COMM-USE |
N |
PMC3585141 |
23468633.0 |
10.1371/journal.ppat.1003196 |
sc854ug9 |
0.592593 |
|
Gralinski_2015, Lorè_2020 |
| 20 |
Kollmus_2020 |
A comprehensive and comparative phenotypic analysis of the collaborative founder strains identifies new and known phenotypes |
Kollmus, Heike; Fuchs, Helmut; Lengger, Christoph; Haselimashhadi, Hamed; Bogue, Molly A.; Östereicher, Manuela A.; Horsch, Marion; Adler, Thure; Aguilar-Pimentel, Juan Antonio; Amarie, Oana Veronica; Becker, Lore; Beckers, Johannes; Calzada-Wack, Julia; Garrett, Lillian; Hans, Wolfgang; Hölter, Sabine M.; Klein-Rodewald, Tanja; Maier, Holger; Mayer-Kuckuk, Philipp; Miller, Gregor; Moreth, Kristin; Neff, Frauke; Rathkolb, Birgit; Rácz, Ildikó; Rozman, Jan; Spielmann, Nadine; Treise, Irina; Busch, Dirk; Graw, Jochen; Klopstock, Thomas; Wolf, Eckhard; Wurst, Wolfgang; Yildirim, Ali Önder; Mason, Jeremy; Torres, Arturo; Balling, Rudi; Mehaan, Terry; Gailus-Durner, Valerie; Schughart, Klaus; Hrabě de Angelis, Martin |
2020 |
2020-02-14 |
None |
N |
PMC7060152 |
32060626.0 |
10.1007/s00335-020-09827-3 |
dw6v3wtm |
0.588171 |
Aylor_2011 |
Gralinski_2015, Tibayrenc_2015, Lorè_2020 |
| 21 |
Noll_2019 |
The Collaborative Cross: A Systems Genetics Resource for Studying Host-Pathogen Interactions |
Noll, Kelsey E.; Ferris, Martin T.; Heise, Mark T. |
2019 |
2019-04-10 |
PMC |
N |
PMC6494101 |
30974083.0 |
10.1016/j.chom.2019.03.009 |
84sotgds |
0.494226 |
|
Ferris_2013, Leist_2018, Sironi_2015 |
| 22 |
Nudel_2019 |
A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population |
Nudel, Ron; Wang, Yunpeng; Appadurai, Vivek; Schork, Andrew J.; Buil, Alfonso; Agerbo, Esben; Bybjerg-Grauholm, Jonas; Børglum, Anders D.; Daly, Mark J.; Mors, Ole; Hougaard, David M.; Mortensen, Preben B.; Werge, Thomas; Nordentoft, Merete; Thompson, Wesley K.; Benros, Michael E. |
2019 |
2019-11-11 |
COMM-USE |
N |
PMC6848113 |
31712607.0 |
10.1038/s41398-019-0622-3 |
pp1t9ghm |
0.463116 |
Nogales_2019 |
Dettogni_2013, Torres_2010, Yang_2011, Liu_C_2016 |
| 23 |
WILSON_2015 |
The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens |
WILSON, BENJAMIN A.; GARUD, NANDITA R.; FEDER, ALISON F.; ASSAF, ZOE J.; PENNINGS, PLEUNI S. |
2015 |
2015-12-17 |
None |
N |
PMC4943078 |
26578204.0 |
10.1111/mec.13474 |
rzsdaoe7 |
0.426806 |
|
Tibayrenc_2015 |
| 24 |
Lorè_2020 |
Collaborative Cross Mice Yield Genetic Modifiers for Pseudomonas aeruginosa Infection in Human Lung Disease |
Lorè, Nicola Ivan; Sipione, Barbara; He, Gengming; Strug, Lisa J.; Atamni, Hanifa J.; Dorman, Alexandra; Mott, Richard; Iraqi, Fuad A.; Bragonzi, Alessandra |
2020 |
2020-03-03 |
COMM-USE |
N |
PMC7064750 |
32127447.0 |
10.1128/mbio.00097-20 |
etx1iegm |
0.370923 |
|
Gralinski_2015, Gralinski_2017 |
| 25 |
Smith_2016 |
Tuberculosis Susceptibility and Vaccine Protection Are Independently Controlled by Host Genotype |
Smith, Clare M.; Proulx, Megan K.; Olive, Andrew J.; Laddy, Dominick; Mishra, Bibhuti B.; Moss, Caitlin; Gutierrez, Nuria Martinez; Bellerose, Michelle M.; Barreira-Silva, Palmira; Phuah, Jia Yao; Baker, Richard E.; Behar, Samuel M.; Kornfeld, Hardy; Evans, Thomas G.; Beamer, Gillian; Sassetti, Christopher M. |
2016 |
2016-09-20 |
COMM-USE |
N |
PMC5030360 |
27651361.0 |
10.1128/mbio.01516-16 |
vvge4nus |
0.368944 |
|
|
| 26 |
Pedersen_2016 |
Natural resistance to experimental feline infectious peritonitis virus infection is decreased rather than increased by positive genetic selection |
Pedersen, Niels C.; Liu, Hongwei; Durden, Monica; Lyons, Leslie A. |
2016 |
2016-03-31 |
PMC |
N |
PMC7112786 |
26964713.0 |
10.1016/j.vetimm.2016.01.002 |
lqcoivr1 |
0.339127 |
|
|
| 27 |
Bang_1978 |
Genetics of Resistance of Animals to Viruses: I. Introduction and Studies in Mice |
Bang, Frederik B. |
1978 |
1978-12-31 |
PMC |
N |
|
219668.0 |
10.1016/s0065-3527(08)60102-5 |
60wj0rfc |
0.307178 |
|
Tibayrenc_2015 |