Topic 02 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 25 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Snyder_2006 PATRIC: The VBI PathoSystems Resource Integration Center Snyder, E. E.; Kampanya, N.; Lu, J.; Nordberg, E. K.; Karur, H. R.; Shukla, M.; Soneja, J.; Tian, Y.; Xue, T.; Yoo, H.; Zhang, F.; Dharmanolla, C.; Dongre, N. V.; Gillespie, J. J.; Hamelius, J.; Hance, M.; Huntington, K. I.; Jukneliene, D.; Koziski, J.; Mackasmiel, L.; Mane, S. P.; Nguyen, V.; Purkayastha, A.; Shallom, J.; Yu, G.; Guo, Y.; Gabbard, J.; Hix, D.; Azad, A. F.; Baker, S. C.; Boyle, S. M.; Khudyakov, Y.; Meng, X. J.; Rupprecht, C.; Vinje, J.; Crasta, O. R.; Czar, M. J.; Dickerman, A.; Eckart, J. D.; Kenyon, R.; Will, R.; Setubal, J. C.; Sobral, B. W. S. 2006 2006-11-16 NONCOMM N PMC1669763 17142235.0 10.1093/nar/gkl858 3ulketgy 0.849432 UNKNOWN_2018, UNKNOWN_2016 Zhang_2007
2 Aziz_2012 SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models Aziz, Ramy K.; Devoid, Scott; Disz, Terrence; Edwards, Robert A.; Henry, Christopher S.; Olsen, Gary J.; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Stevens, Rick L.; Vonstein, Veronika; Xia, Fangfang 2012 2012-10-24 None N PMC3480482 23110173.0 10.1371/journal.pone.0048053 vret3sh1 0.839319 Montgomery_2004, Lu_Q_2006
3 Kurc_2006 An XML-based System for Synthesis of Data from Disparate Databases Kurc, Tahsin; Janies, Daniel A.; Johnson, Andrew D.; Langella, Stephen; Oster, Scott; Hastings, Shannon; Habib, Farhat; Camerlengo, Terry; Ervin, David; Catalyurek, Umit V.; Saltz, Joel H. 2006 2006-06-30 PMC N 16501185.0 10.1197/jamia.m1848 m0q52a2t 0.826433 Montgomery_2004, Mendizabal-Ruiz_2018
4 Peters_2007 Integrating epitope data into the emerging web of biomedical knowledge resources Peters, Bjoern; Sette, Alessandro 2007 2007-01-01 PMC N PMC7097317 17479127.0 10.1038/nri2092 vvlsqy36 0.820696
5 Aurrecoechea_2017 EuPathDB: the eukaryotic pathogen genomics database resource Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie 2017 2017-01-04 NONCOMM N PMC5210576 27903906.0 10.1093/nar/gkw1105 t94aufs3 0.805256 UNKNOWN_2018, UNKNOWN_2016 Zhang_2007, Snyder_2006
6 Su_H_2012 Framing the structure of global open innovation research Su, Hsin-Ning; Lee, Pei-Chun 2012 2012-04-30 PMC N 10.1016/j.joi.2011.12.001 xu4camqf 0.771172 Lee_P_2011
7 Kolatkar_2008 C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training Kolatkar, Anand; Kennedy, Kevin; Halabuk, Dan; Kunken, Josh; Marrinucci, Dena; Bethel, Kelly; Guzman, Rodney; Huckaby, Tim; Kuhn, Peter 2008 2008-02-20 COMM-USE N PMC2229842 18286178.0 10.1371/journal.pone.0001621 pb1e2w7s 0.770044 Lu_Q_2006, Montgomery_2004 Wang_2006, Montgomery_2004, Molodenskiy_2019, Asbury_2010
8 Wagner_2020 Real-time biomedical knowledge synthesis of the exponentially growing world wide web using unsupervised neural networks Tyler Wagner; Samir Awasthi; Gayle Wittenberg; AJ Venkatakrishnan; Dan Tarjan; Anuli Anyanwu-Ofili; Andrew Badley; John Halamka; Christopher Flores; Najat Khan; Rakesh Barve; Venky Soundararajan 2020 2020-04-04 BioRxiv N 10.1101/2020.04.03.020602 tnoybbfx 0.759757 Joshi_2020
9 Weir_2017 Development of a microbial dose response visualization and modelling application for QMRA modelers and educators Weir, Mark H.; Mitchell, Jade; Flynn, William; Pope, Joanna M. 2017 2017-02-01 PMC N PMC5665384 29104445.0 10.1016/j.envsoft.2016.11.011 wslu5fof 0.751066 Lu_Q_2006, Kurc_2006
10 Asbury_2010 Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome Asbury, Thomas M; Mitman, Matt; Tang, Jijun; Zheng, W Jim 2010 2010-09-02 COMM-USE N PMC2941692 20813045.0 10.1186/1471-2105-11-444 5pvln91x 0.742121 Montgomery_2004, Chang_2011, Sen_D_2018 Montgomery_2004, Aziz_2012
11 Stanstrup_2019 The metaRbolomics Toolbox in Bioconductor and beyond Stanstrup, Jan; Broeckling, Corey D.; Helmus, Rick; Hoffmann, Nils; Mathé, Ewy; Naake, Thomas; Nicolotti, Luca; Peters, Kristian; Rainer, Johannes; Salek, Reza M.; Schulze, Tobias; Schymanski, Emma L.; Stravs, Michael A.; Thévenot, Etienne A.; Treutler, Hendrik; Weber, Ralf J. M.; Willighagen, Egon; Witting, Michael; Neumann, Steffen 2019 2019-09-23 COMM-USE N PMC6835268 31548506.0 10.3390/metabo9100200 s8ohts1j 0.726300 Lu_Q_2006, Montgomery_2004, Kurc_2006
12 Lefkowitz_2008 Virus Databases Lefkowitz, E.J.; Odom, M.R.; Upton, C. 2008 2008-12-31 PMC N PMC7150036 10.1016/b978-012374410-4.00719-6 60vrlrim 0.723191 Nakai_1992
13 Finnie_2016 EpiJSON: A unified data-format for epidemiology Finnie, Thomas J.R.; South, Andy; Bento, Ana; Sherrard-Smith, Ellie; Jombart, Thibaut 2016 2016-06-30 None N PMC7104924 27266846.0 10.1016/j.epidem.2015.12.002 8gyejoc5 0.708363 Lu_Q_2006
14 Sidorov_2009 SNAD: sequence name annotation-based designer Sidorov, Igor A; Reshetov, Denis A; Gorbalenya, Alexander E 2009 2009-08-14 COMM-USE N PMC2739203 19682364.0 10.1186/1471-2105-10-251 s1gwh4qg 0.698929 Montgomery_2004, Wang_2006, Lu_Q_2006, UNKNOWN_2018 Pessia_2015, Choo_2009, Schäffer_2019
15 Watson_2007 DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data Watson, Michael; Dukes, Juliet; Abu-Median, Abu-Bakr; King, Donald P; Britton, Paul 2007 2007-09-14 COMM-USE N PMC2375028 17868443.0 10.1186/gb-2007-8-9-r190 rzzsmuoc 0.671921 Montgomery_2004, Mendizabal-Ruiz_2018, Lee_C_2017
16 Lee_P_2011 Quantitative mapping of scientific research—The case of electrical conducting polymer nanocomposite Lee, Pei-Chun; Su, Hsin-Ning 2011 2011-01-31 PMC N PMC7126463 10.1016/j.techfore.2010.06.002 vl6gkoin 0.665538 Su_H_2012
17 Nagraj_2018 epicontacts: Handling, visualisation and analysis of epidemiological contacts Nagraj, VP; Randhawa, Nistara; Campbell, Finlay; Crellen, Thomas; Sudre, Bertrand; Jombart, Thibaut 2018 2018-10-11 COMM-USE N PMC6572866 31240097.0 10.12688/f1000research.14492.2 82820j9a 0.664831 UNKNOWN_2018, Lu_Q_2006, Montgomery_2004
18 Zhang_2007 An emerging cyberinfrastructure for biodefense pathogen and pathogen–host data Zhang, C.; Crasta, O.; Cammer, S.; Will, R.; Kenyon, R.; Sullivan, D.; Yu, Q.; Sun, W.; Jha, R.; Liu, D.; Xue, T.; Zhang, Y.; Moore, M.; McGarvey, P.; Huang, H.; Chen, Y.; Zhang, J.; Mazumder, R.; Wu, C.; Sobral, B. 2007 2007-11-04 NONCOMM N PMC2239001 17984082.0 10.1093/nar/gkm903 0kkm0tgj 0.641247 UNKNOWN_2016, UNKNOWN_2018, Wang_2006
19 UNKNOWN_2018 Database resources of the National Center for Biotechnology Information None 2018 2018-01-04 PMC N PMC5753372 29140470.0 10.1093/nar/gkx1095 ca6pff0p 0.624145 UNKNOWN_2016 UNKNOWN_2016
20 UNKNOWN_2019 UniProt: a worldwide hub of protein knowledge None 2019 2019-01-08 COMM-USE N PMC6323992 30395287.0 10.1093/nar/gky1049 pt7v3gb4 0.593089 UNKNOWN_2018, UNKNOWN_2016 Choo_2009, van_Dijk_2008
21 Bauch_2020 Informing epidemic (research) responses in a timely fashion by knowledge management - a Zika virus use case Angela Bauch; Johann Pellet; Tina Schleicher; Xiao Yu; Andrea Gelemanović; Cosimo Cristella; Pieter L. Fraaij; Ozren Polasek; Charles Auffray; Dieter Maier; Marion Koopmans; Menno D. de Jong 2020 2020-04-18 BioRxiv N 10.1101/2020.04.17.044743 tbx0ppu8 0.592183
22 Lu_Q_2006 KDE Bioscience: Platform for bioinformatics analysis workflows Lu, Qiang; Hao, Pei; Curcin, Vasa; He, Weizhong; Li, Yuan-Yuan; Luo, Qing-Ming; Guo, Yi-Ke; Li, Yi-Xue 2006 2006-08-31 PMC N PMC7106075 16260186.0 10.1016/j.jbi.2005.09.001 ihh521ur 0.589955 Montgomery_2004, Xu_Z_2009 Greenbaum_2009, Aziz_2012, Snyder_2006
23 Araújo_2011 A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems Araújo, Luciano V; Malkowski, Simon; Braghetto, Kelly R; Passos-Bueno, Maria R; Zatz, Mayana; Pu, Calton; Ferreira, João E 2011 2011-12-22 COMM-USE N PMC3287582 22369688.0 10.1186/1471-2164-12-s4-s13 dk7eij1l 0.585227 Lu_Q_2006
24 Montgomery_2004 Sockeye: A 3D Environment for Comparative Genomics Montgomery, Stephen B.; Astakhova, Tamara; Bilenky, Mikhail; Birney, Ewan; Fu, Tony; Hassel, Maik; Melsopp, Craig; Rak, Marcin; Robertson, A. Gordon; Sleumer, Monica; Siddiqui, Asim S.; Jones, Steven J.M. 2004 2004-05-01 None N PMC479126 15123592.0 10.1101/gr.1890304 ts1eb8fk 0.576977 Chang_2011, Wang_2006, Dai_Q_2012 Wang_2006, Song_2005
25 Stokes_1993 Computer network for a diagnostic virology laboratory Stokes, K.Jerry; Morris, David J.; Klapper, Paul E.; Semple, A.David; Crosdale, Elaine; Corbitt, Gerald 1993 1993-12-31 PMC N 8106601.0 10.1016/0166-0934(93)90113-6 eawmuuye 0.568558
26 Pathegama_2005 Interactive Real-time Image Analysis System for Distant Operation Pathegama, Mahinda P.; Göl, Özdemir 2005 2005-01-01 PMC N PMC7121714 10.1007/0-387-26325-x_3 5nc8f3a4 0.545885 Montgomery_2004, Mendizabal-Ruiz_2018 Kylberg_2009, Acar_2016
27 Tcherepanov_2006 Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome Tcherepanov, Vasily; Ehlers, Angelika; Upton, Chris 2006 2006-06-13 COMM-USE N PMC1534038 16772042.0 10.1186/1471-2164-7-150 1e2kkhht 0.545630 UNKNOWN_2018
28 Wilson_2003 Application of data mining techniques in pharmacovigilance Wilson, Andrew M; Thabane, Lehana; Holbrook, Anne 2003 2003-09-30 PMC N PMC1884444 14748811.0 10.1046/j.1365-2125.2003.01968.x 183n1lrf 0.544123 Collier_2007
29 Joshi_2020 deepMINE - Natural Language Processing based Automatic Literature Mining and Research Summarization for Early-Stage Comprehension in Pandemic Situations specifically for COVID-19 Bhrugesh Joshi; Vishvajit Bakarola; Parth Shah; Ramar Krishnamurthy 2020 2020-04-02 BioRxiv Y 10.1101/2020.03.30.014555 aeyf0yu1 0.533443
30 Bottomly_2015 plethy: management of whole body plethysmography data in R Bottomly, Daniel; Wilmot, Beth; McWeeney, Shannon K 2015 2015-04-29 None N PMC4434826 25924931.0 10.1186/s12859-015-0547-7 ermuiujq 0.529071 Lu_Q_2006, Montgomery_2004, Kurc_2006
31 Pickett_2011 ViPR: an open bioinformatics database and analysis resource for virology research Pickett, Brett E.; Sadat, Eva L.; Zhang, Yun; Noronha, Jyothi M.; Squires, R. Burke; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larson, Christopher N.; Dietrich, Jonathan; Klem, Edward B.; Scheuermann, Richard H. 2011 2011-10-17 NONCOMM N PMC3245011 22006842.0 10.1093/nar/gkr859 48ym7eti 0.522020 Pickett_2012
32 Pickett_2012 Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community Pickett, Brett E.; Greer, Douglas S.; Zhang, Yun; Stewart, Lucy; Zhou, Liwei; Sun, Guangyu; Gu, Zhiping; Kumar, Sanjeev; Zaremba, Sam; Larsen, Christopher N.; Jen, Wei; Klem, Edward B.; Scheuermann, Richard H. 2012 2012-11-19 COMM-USE N PMC3509690 23202522.0 10.3390/v4113209 facjsy92 0.506552 UNKNOWN_2018, Montgomery_2004 Pickett_2011
33 Wu_T_2020 Open-source analytics tools for studying the COVID-19 coronavirus outbreak Tianzhi Wu; Xijin Ge; Guangchuang Yu; Erqiang Hu 2020 2020-02-27 BioRxiv N 10.1101/2020.02.25.20027433 qtrquuvv 0.489870 Santillana_2014
34 Yang_2007 IDBD: Infectious Disease Biomarker Database Yang, In Seok; Ryu, Chunsun; Cho, Ki Joon; Kim, Jin Kwang; Ong, Swee Hoe; Mitchell, Wayne P.; Kim, Bong Su; Oh, Hee-Bok; Kim, Kyung Hyun 2007 2007-11-03 NONCOMM N PMC2238845 17982173.0 10.1093/nar/gkm925 8cixsjrf 0.476340 Collier_2007, Lu_Q_2006
35 Wang_2006 MMDB: annotating protein sequences with Entrez's 3D-structure database Wang, Yanli; Addess, Kenneth J.; Chen, Jie; Geer, Lewis Y.; He, Jane; He, Siqian; Lu, Shennan; Madej, Thomas; Marchler-Bauer, Aron; Thiessen, Paul A.; Zhang, Naigong; Bryant, Stephen H. 2006 2006-11-29 NONCOMM N PMC1751549 17135201.0 10.1093/nar/gkl952 6qpsxmgi 0.474315 UNKNOWN_2016, Montgomery_2004, UNKNOWN_2018 Song_2005, Zemla_2011
36 Wagner_1984 A computer based system for collection, storage, retrieval and reporting accession information in a veterinary medical diagnostic laboratory Wagner, Joseph E.; Warriner, William J.; Bradfield, Sylvia A.; Farrar, Patricia L.; Morehouse, Lawrence G. 1984 1984-12-31 PMC N 6380915.0 10.1016/0010-4825(84)90033-7 83f0ruku 0.474229 UNKNOWN_2018 Stokes_1993, Chapman_2004
37 Sturm_2020 Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data Gregor Sturm; Tamas G Szabo; Georgios Fotakis; Marlene Haider; Dietmar Rieder; Zlatko Trajanoski; Francesca Finotello 2020 2020-04-13 BioRxiv Y 10.1101/2020.04.10.035865 q6w8zgc3 0.462295 Montgomery_2004, Kurc_2006
38 Pérez_2016 Glyco3D: A Suite of Interlinked Databases of 3D Structures of Complex Carbohydrates, Lectins, Antibodies, and Glycosyltransferases Pérez, Serge; Sarkar, Anita; Rivet, Alain; Drouillard, Sophie; Breton, Christelle; Imberty, Anne 2016 2016-09-08 PMC N PMC7121943 10.1007/978-4-431-56454-6_7 1c515h51 0.426826 Wang_2006, Montgomery_2004, UNKNOWN_2018
39 Le_Mercier_2019 A Bioinformatics View of Glycan–Virus Interactions Le Mercier, Philippe; Mariethoz, Julien; Lascano-Maillard, Josefina; Bonnardel, François; Imberty, Anne; Ricard-Blum, Sylvie; Lisacek, Frédérique 2019 2019-04-23 COMM-USE N PMC6521074 31018588.0 10.3390/v11040374 o13ti3xx 0.417608
40 UNKNOWN_2016 Database resources of the National Center for Biotechnology Information None 2016 2016-01-04 PMC N PMC4702911 26615191.0 10.1093/nar/gkv1290 a564l6vs 0.415323 UNKNOWN_2018 UNKNOWN_2018, Aurrecoechea_2017
41 Pfeiffer_2015 Spatial and temporal epidemiological analysis in the Big Data era Pfeiffer, Dirk U.; Stevens, Kim B. 2015 2015-11-01 PMC N PMC7114113 26092722.0 10.1016/j.prevetmed.2015.05.012 fbl3szsu 0.408233 Coelho_2008
42 Cai_Y_2013 Introduction to 3D Immersive and Interactive Learning Cai, Yiyu; Tay, Chor Ter; Ngo, Boon Keong 2013 2013-02-12 PMC N PMC7122101 10.1007/978-981-4021-90-6_1 maggme5z 0.392415
43 Shegogue_2005 Integration of the Gene Ontology into an object-oriented architecture Shegogue, Daniel; Zheng, W Jim 2005 2005-05-10 COMM-USE N PMC1156866 15885145.0 10.1186/1471-2105-6-113 tv1fx7sy 0.388909 Montgomery_2004, Sen_D_2018, Qi_Z_2018 Sathiamurthy_2005, Vella_2017, Nakai_1992
44 Hatcher_2017 Virus Variation Resource – improved response to emergent viral outbreaks Hatcher, Eneida L.; Zhdanov, Sergey A.; Bao, Yiming; Blinkova, Olga; Nawrocki, Eric P.; Ostapchuck, Yuri; Schäffer, Alejandro A.; Brister, J. Rodney 2017 2017-01-04 PMC N PMC5210549 27899678.0 10.1093/nar/gkw1065 worgd0xu 0.370095 UNKNOWN_2018, UNKNOWN_2016
45 Jacques_2010 Small-angle scattering for structural biology—Expanding the frontier while avoiding the pitfalls Jacques, David A; Trewhella, Jill 2010 2010-01-29 PMC N PMC2867006 20120026.0 10.1002/pro.351 eg63bjl5 0.367934 Qi_Z_2018, Liou_2013, Chang_2011 Chou_2011
46 Andreatta_2011 NNAlign: A Web-Based Prediction Method Allowing Non-Expert End-User Discovery of Sequence Motifs in Quantitative Peptide Data Andreatta, Massimo; Schafer-Nielsen, Claus; Lund, Ole; Buus, Søren; Nielsen, Morten 2011 2011-11-02 COMM-USE N PMC3206854 22073191.0 10.1371/journal.pone.0026781 dc63kane 0.360107 Liou_2013, Montgomery_2004, Chang_2011 Choo_2009, Pessia_2015, Lee_B_2009, Shen_2018
47 TANG_2007 Group Argumentation and Its Analysis on a Highlighted Social Event — Practice of Qualitative Meta-synthesis TANG, Xi-jin; LIU, Yi-jun 2007 2007-03-31 PMC N 10.1016/s1874-8651(08)60023-x s9eez11q 0.356184 Matsuzaw_2011
48 Tobias_2020 COVID19-Tracker: A shiny app to produce comprehensive data visualization for SARS-CoV-2 epidemic in Spain Aurelio Tobias; Joan Valls; Pau Satorra; Cristian Tebe 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.01.20049684 i1g9ikdb 0.354626 John_2019
49 Zhang_2005 Web-based electronic patient records for collaborative medical applications Zhang, Jianguo; Sun, Jianyong; Yang, Yuanyuan; Chen, Xiaomeng; Meng, Lili; Lian, Ping 2005 2005-04-30 PMC N PMC7126510 15755531.0 10.1016/j.compmedimag.2004.09.005 srtkqr13 0.352592 Lu_Q_2006 Lapinsky_2004, Freifeld_2008
50 Nandy_2015 Chapter 5 The GRANCH Techniques for Analysis of DNA, RNA and Protein Sequences Nandy, Ashesh 2015 2015-12-31 PMC N PMC7151884 10.1016/b978-1-68108-053-6.50005-3 7kiahjyy 0.345157 Sen_D_2018
51 Englund_2011 Viral Infections in Immunocompromised Patients Englund, Janet; Feuchtinger, Tobias; Ljungman, Per 2011 2011-01-31 None N PMC3030455 21195305.0 10.1016/j.bbmt.2010.11.008 63ohetih 0.340328
52 Xu_Z_2009 CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes Xu, Zhao; Hao, Bailin 2009 2009-07-01 NONCOMM N PMC2703908 19398429.0 10.1093/nar/gkp278 02opdk0m 0.339165 Montgomery_2004, Lee_C_2017, Chang_2011 Yu_Z_2010
53 Huang_2011 Bioinformatics Resources and Tools for Phage Display Huang, Jian; Ru, Beibei; Dai, Ping 2011 2011-01-18 COMM-USE N PMC6259106 21245805.0 10.3390/molecules16010694 407bthqj 0.333855 Lu_Q_2006, Sen_D_2018 Huang_2006
54 Lee_G_2009 Proportional fault-tolerant data mining with applications to bioinformatics Lee, Guanling; Peng, Sheng-Lung; Lin, Yuh-Tzu 2009 2009-02-19 PMC N PMC7087812 10.1007/s10796-009-9158-z kt9sbn40 0.327509 Lee_C_2017, Liou_2013, Saw_A_2019, Qi_Z_2018, Chang_2011 Bashir_2020, Wilson_2003, Hu_Y_2006, Wu_Y_2020
55 Greenbaum_2009 Ontology Development for the Immune Epitope Database Greenbaum, Jason A.; Vita, Randi; Zarebski, Laura M.; Sette, Alessandro; Peters, Bjoern 2009 2009-08-08 PMC N PMC7121563 10.1007/978-1-4419-0540-6_4 hgxhyg46 0.326798 Sathiamurthy_2005
56 Nooij_2018 Overview of Virus Metagenomic Classification Methods and Their Biological Applications Nooij, Sam; Schmitz, Dennis; Vennema, Harry; Kroneman, Annelies; Koopmans, Marion P. G. 2018 2018-04-23 COMM-USE N PMC5924777 29740407.0 10.3389/fmicb.2018.00749 s5k59eq8 0.323204
57 Bekaert_2009 Recode-2: new design, new search tools, and many more genes Bekaert, Michaël; Firth, Andrew E.; Zhang, Yan; Gladyshev, Vadim N.; Atkins, John F.; Baranov, Pavel V. 2009 2009-09-25 NONCOMM N PMC2808893 19783826.0 10.1093/nar/gkp788 8y8ho2x5 0.314031 Lee_C_2017
58 Huang_2006 MIMOX: a web tool for phage display based epitope mapping Huang, Jian; Gutteridge, Alex; Honda, Wataru; Kanehisa, Minoru 2006 2006-10-12 COMM-USE N PMC1618411 17038191.0 10.1186/1471-2105-7-451 1ypgij14 0.309291 Montgomery_2004, Lee_C_2017, Lu_Q_2006, Chang_2011, Qi_Z_2018 Mayrose_2007
59 Bos_L_2014 How integration of global omics-data could help preparing for pandemics – a scent of influenza Bos, Lieuwe D. J.; de Jong, Menno D.; Sterk, Peter J.; Schultz, Marcus J. 2014 2014-04-22 COMM-USE N PMC4000993 24795745.0 10.3389/fgene.2014.00080 kusjwue0 0.308722 Collier_2007, Vazquez_2020
60 Brodie_2004 Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments Brodie, Ryan; Smith, Alex J; Roper, Rachel L; Tcherepanov, Vasily; Upton, Chris 2004 2004-07-14 PMC N PMC481056 15253776.0 10.1186/1471-2105-5-96 lwla5ugt 0.306893 Montgomery_2004, Chang_2011, Lee_C_2017, Wang_2006
61 John_2019 Shiny Framework Based Visualization and Analytics Tool for Middle East Respiratory Syndrome John, Maya; Shaiba, Hadil 2019 2019-12-04 PMC N PMC7122755 10.1007/978-3-030-36365-9_16 r7tg0s45 0.303885
62 Collier_2007 A multilingual ontology for infectious disease surveillance: rationale, design and challenges Collier, Nigel; Kawazoe, Ai; Jin, Lihua; Shigematsu, Mika; Dien, Dinh; Barrero, Roberto A.; Takeuchi, Koichi; Kawtrakul, Asanee 2007 2007-06-26 PMC N PMC7087677 10.1007/s10579-007-9019-7 4524vg4x 0.300365 Keller_2009