Topic 06 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 25 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Yang_2011 A nationwide web-based automated system for outbreak early detection and rapid response in China Yang, Weizhong; Li, Zhongjie; Lan, Yajia; Wang, Jinfeng; Ma, Jiaqi; Jin, Lianmei; Sun, Qiao; Lv, Wei; Lai, Shengjie; Liao, Yilan; Hu, Wenbiao 2011 2011-03-08 PMC N PMC3729055 23908878.0 10.5365/wpsar.2010.1.1.009 zoai4kvn 0.893488
2 Njuguna_2014 A comparison of smartphones to paper-based questionnaires for routine influenza sentinel surveillance, Kenya, 2011–2012 Njuguna, Henry N; Caselton, Deborah L; Arunga, Geoffrey O; Emukule, Gideon O; Kinyanjui, Dennis K; Kalani, Rosalia M; Kinkade, Carl; Muthoka, Phillip M; Katz, Mark A; Mott, Joshua A 2014 2014-12-24 COMM-USE N PMC4305246 25539745.0 10.1186/s12911-014-0107-5 izw1xh21 0.888767 UNKNOWN_2018
3 Takahashi_2008 A flexibly shaped space-time scan statistic for disease outbreak detection and monitoring Takahashi, Kunihiko; Kulldorff, Martin; Tango, Toshiro; Yih, Katherine 2008 2008-04-11 COMM-USE N PMC2386448 18402711.0 10.1186/1476-072x-7-14 fpiew1jy 0.817123 Izakian_2012, Que_J_2012
4 Torres-Urquidy_2009 Detection of Disease Outbreaks by the Use of Oral Manifestations Torres-Urquidy, M.H.; Wallstrom, G.; Schleyer, T.K.L. 2009 2009-01-01 PMC N PMC3144048 19131324.0 10.1177/0022034508327546 1grzm2lq 0.784969
5 Brownstein_2008 Surveillance Sans Frontières: Internet-Based Emerging Infectious Disease Intelligence and the HealthMap Project Brownstein, John S; Freifeld, Clark C; Reis, Ben Y; Mandl, Kenneth D 2008 2008-07-08 PMC N PMC2443186 18613747.0 10.1371/journal.pmed.0050151 548402bb 0.752909
6 Lu_H_2009 Multilingual chief complaint classification for syndromic surveillance: An experiment with Chinese chief complaints Lu, Hsin-Min; Chen, Hsinchun; Zeng, Daniel; King, Chwan-Chuen; Shih, Fuh-Yuan; Wu, Tsung-Shu; Hsiao, Jin-Yi 2009 2009-05-31 PMC N PMC7108263 18838292.0 10.1016/j.ijmedinf.2008.08.004 ngow9w7p 0.738491 Collier_2007 Chapman_2004, Zhang_2009
7 Chapman_2004 Fever detection from free-text clinical records for biosurveillance Chapman, Wendy W; Dowling, John N; Wagner, Michael M 2004 2004-04-30 PMC N PMC7128853 15120658.0 10.1016/j.jbi.2004.03.002 vkjz1orh 0.728091
8 Yang_2017 Chapter 7 China Infectious Diseases Automated-Alert and Response System (CIDARS) Yang, Weizhong; Li, Zhongjie; Lan, Yajia; Ma, Jiaqi; Jin, Lianmei; Lai, Shengjie; Liao, Yilan; Lv, Wei; Sun, Qiao; Wang, Jinfeng 2017 2017-12-31 PMC N PMC7149749 10.1016/b978-0-12-812343-0.00007-2 7khwthux 0.705730
9 Seo_D_2017 Methods Using Social Media and Search Queries to Predict Infectious Disease Outbreaks Seo, Dong-Woo; Shin, Soo-Yong 2017 2017-10-31 NONCOMM N PMC5688036 29181246.0 10.4258/hir.2017.23.4.343 jx8wulcg 0.704545 Santillana_2014, Collier_2007, Lu_Q_2006
10 Johnson_2019 An Ecological Framework for Modeling the Geography of Disease Transmission Johnson, Erica E.; Escobar, Luis E.; Zambrana-Torrelio, Carlos 2019 2019-07-31 PMC N PMC7114676 31078330.0 10.1016/j.tree.2019.03.004 wcpc32w4 0.681933
11 Chan_2010 Surveillance and Epidemiology of Infectious Diseases using Spatial and Temporal Lustering Methods Chan, Ta-Chien; King, Chwan-Chuen 2010 2010-07-27 PMC N PMC7120538 10.1007/978-1-4419-6892-0_10 81wig9xh 0.659939 Sen_D_2018
12 Boulos_2005 Web GIS in practice III: creating a simple interactive map of England's Strategic Health Authorities using Google Maps API, Google Earth KML, and MSN Virtual Earth Map Control Boulos, Maged N Kamel 2005 2005-09-21 COMM-USE N PMC1242244 16176577.0 10.1186/1476-072x-4-22 5dx3lscp 0.650774
13 Cheng_2019 New approach to identifying proper thresholds for a heat warning system using health risk increments Cheng, Yu-Ting; Lung, Shih-Chun Candice; Hwang, Jing-Shiang 2019 2019-03-31 PMC N PMC7126132 30599292.0 10.1016/j.envres.2018.12.059 gwr4pkqk 0.644208
14 Tsui_2003 Technical description of RODS: a real-time public health surveillance system Tsui, Fu-Chiang; Espino, Jeremy U.; Dato, Virginia M.; Gesteland, Per H.; Hutman, Judith; Wagner, Michael M. 2003 2003-10-31 None N PMC212776 12807803.0 10.1197/jamia.m1345 jg13scgo 0.638065
15 Que_J_2012 Spatial and Temporal Algorithm Evaluation for Detecting Over-The-Counter Thermometer Sale Increases during 2009 H1N1 Pandemic Que, Jialan; Tsui, Fu-Chiang 2012 2012-05-17 PMC N PMC3615801 23569624.0 10.5210/ojphi.v4i1.3915 weoxwksv 0.636528 Chang_2011, Lee_C_2017 Takahashi_2008, Izakian_2012
16 Yuan_2013 Monitoring Influenza Epidemics in China with Search Query from Baidu Yuan, Qingyu; Nsoesie, Elaine O.; Lv, Benfu; Peng, Geng; Chunara, Rumi; Brownstein, John S. 2013 2013-05-30 COMM-USE N PMC3667820 23750192.0 10.1371/journal.pone.0064323 ctpgylnr 0.622044 Lee_C_2017, Saw_A_2019, Qi_Z_2018 Liang_2018
17 VanderWaal_2017 Translating Big Data into Smart Data for Veterinary Epidemiology VanderWaal, Kimberly; Morrison, Robert B.; Neuhauser, Claudia; Vilalta, Carles; Perez, Andres M. 2017 2017-07-17 COMM-USE N PMC5511962 28770216.0 10.3389/fvets.2017.00110 03tx0rni 0.614130
18 Shaman_2018 Pandemic preparedness and forecast Shaman, Jeffrey 2018 2018-02-20 PMC N PMC7097585 29463927.0 10.1038/s41564-018-0117-7 l1nt46zx 0.584257
19 Jiang_2017 Identifying Personal Health Experience Tweets with Deep Neural Networks Jiang, Keyuan; Gupta, Ravish; Gupta, Matrika; Calix, Ricardo A.; Bernard, Gordon R. 2017 2017-07-01 PMC N PMC5702551 29060084.0 10.1109/embc.2017.8037039 k26orfrt 0.572863 Dandekar_2017
20 Freifeld_2008 HealthMap: Global Infectious Disease Monitoring through Automated Classification and Visualization of Internet Media Reports Freifeld, Clark C.; Mandl, Kenneth D.; Reis, Ben Y.; Brownstein, John S. 2008 2008-04-30 None N PMC2274789 18096908.0 10.1197/jamia.m2544 1lgi1e60 0.552386 Keller_2009, Zhang_2009
21 Souza_2020 An Innovative Big Data Predictive Analytics Framework over Hybrid Big Data Sources with an Application for Disease Analytics Souza, Joglas; Leung, Carson K.; Cuzzocrea, Alfredo 2020 2020-03-28 PMC N PMC7123615 10.1007/978-3-030-44041-1_59 mxprt6x6 0.535958 Kurc_2006 Bello-Orgaz_2016, VanderWaal_2017, Yang_2019
22 Perez_2011 Global animal disease surveillance Perez, A.; AlKhamis, M.; Carlsson, U.; Brito, B.; Carrasco-Medanic, R.; Whedbee, Z.; Willeberg, P. 2011 2011-09-30 PMC N 22748173.0 10.1016/j.sste.2011.07.006 8nw2al5o 0.528076
23 Soontornpipit_2016 Development of the Electronic Surveillance Monitoring System on Web Applications Soontornpipit, Pichitpong; Viwatwongkasem, Chukiat; Taratep, Chanvit; Teerawat, Watcharawan; Vanitchatchavan, Prachuab 2016 2016-12-31 PMC N 10.1016/j.procs.2016.05.110 3uz42vx8 0.519041 Yang_2011, Tsui_2003
24 Zhang_2009 Automatic online news monitoring and classification for syndromic surveillance Zhang, Yulei; Dang, Yan; Chen, Hsinchun; Thurmond, Mark; Larson, Cathy 2009 2009-11-30 PMC N PMC7114309 10.1016/j.dss.2009.04.016 r0lduvs1 0.515761 Lu_H_2009
25 Cope_2019 Identification of the relative timing of infectiousness and symptom onset for outbreak control Robert C. Cope; Joshua V. Ross 2019 2019-03-08 BioRxiv N 10.1101/571547 8r0vfzeu 0.515369 Cope_2020, Chang_2011, Liou_2013 Cope_2020
26 Santillana_2014 Using Clinicians’ Search Query Data to Monitor Influenza Epidemics Santillana, Mauricio; Nsoesie, Elaine O.; Mekaru, Sumiko R.; Scales, David; Brownstein, John S. 2014 2014-08-12 PMC N PMC4296132 25115873.0 10.1093/cid/ciu647 71tnv4lp 0.497326 Freifeld_2008
27 Keller_2009 Automated vocabulary discovery for geo-parsing online epidemic intelligence Keller, Mikaela; Freifeld, Clark C; Brownstein, John S 2009 2009-11-24 COMM-USE N PMC2787530 19930702.0 10.1186/1471-2105-10-385 f4q1r3vu 0.495194 Freifeld_2008, Collier_2007, Zhang_2009
28 Izakian_2012 A new PSO-optimized geometry of spatial and spatio-temporal scan statistics for disease outbreak detection Izakian, Hesam; Pedrycz, Witold 2012 2012-06-30 PMC N PMC7104009 10.1016/j.swevo.2012.02.001 mrbi0a7r 0.476738 Chang_2011 Takahashi_2008
29 Kamvar_2019 Epidemic curves made easy using the R package incidence Kamvar, Zhian N.; Cai, Jun; Pulliam, Juliet R.C.; Schumacher, Jakob; Jombart, Thibaut 2019 2019-01-31 COMM-USE N PMC6509961 31119031.0 10.12688/f1000research.18002.1 uiqk356j 0.470953 Lu_Q_2006, Collier_2007
30 Liang_2018 Forecasting influenza epidemics by integrating internet search queries and traditional surveillance data with the support vector machine regression model in Liaoning, from 2011 to 2015 Liang, Feng; Guan, Peng; Wu, Wei; Huang, Desheng 2018 2018-06-25 COMM-USE N PMC6022725 29967755.0 10.7717/peerj.5134 yupm6smb 0.465249 UNKNOWN_2018, Saw_A_2019, Lee_C_2017 Yuan_2013
31 Yang_2019 An implementation of real-time air quality and influenza-like illness data storage and processing platform Yang, Chao-Tung; Chen, Cai-Jin; Tsan, Yu-Tse; Liu, Po-Yu; Chan, Yu-Wei; Chan, Wei-Chen 2019 2019-11-30 PMC N PMC7126110 10.1016/j.chb.2018.10.009 uxmqlx4y 0.462148
32 Brahmbhatt_2016 Epidemiology-based Task Assignment Algorithm for Distributed Systems Brahmbhatt, Parth; Camorlinga, Sergio G. 2016 2016-12-31 PMC N 10.1016/j.procs.2016.09.356 qzrhihoz 0.455482 Coelho_2008
33 Cope_2020 Identification of the relative timing of infectiousness and symptom onset for outbreak control Cope, Robert C.; Ross, Joshua V. 2020 2020-02-07 PMC N PMC7094159 31734243.0 10.1016/j.jtbi.2019.110079 hmx2wy1p 0.444903 Cope_2019, Chang_2011, Liou_2013 Cope_2019
34 Klein_2020 A Chronological and Geographical Analysis of Personal Reports of COVID-19 on Twitter Ari Klein; Arjun Magge; Karen O'Connor; Haitao Cai; Davy Weissenbacher; Graciela Gonzalez-Hernandez 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.19.20069948 8f1arjw1 0.435879
35 Wang_2010 Comparing early outbreak detection algorithms based on their optimized parameter values Wang, Xiaoli; Zeng, Daniel; Seale, Holly; Li, Su; Cheng, He; Luan, Rongsheng; He, Xiong; Pang, Xinghuo; Dou, Xiangfeng; Wang, Quanyi 2010 2010-02-28 PMC N 10.1016/j.jbi.2009.08.003 xailjga5 0.430781 Saw_A_2019, Chang_2011
36 Collier_2007 A multilingual ontology for infectious disease surveillance: rationale, design and challenges Collier, Nigel; Kawazoe, Ai; Jin, Lihua; Shigematsu, Mika; Dien, Dinh; Barrero, Roberto A.; Takeuchi, Koichi; Kawtrakul, Asanee 2007 2007-06-26 PMC N PMC7087677 10.1007/s10579-007-9019-7 4524vg4x 0.429248 Keller_2009
37 Simusika_2020 An evaluation of the Zambia influenza sentinel surveillance system, 2011–2017 Simusika, Paul; Tempia, Stefano; Chentulo, Edward; Polansky, Lauren; Mazaba, Mazyanga Lucy; Ndumba, Idah; Mbewe, Quinn K.; Monze, Mwaka 2020 2020-01-13 COMM-USE N PMC6958603 31931793.0 10.1186/s12913-019-4884-5 0pfrk5uk 0.392585
38 Boulos_2004 Descriptive review of geographic mapping of severe acute respiratory syndrome (SARS) on the Internet Boulos, Maged N Kamel 2004 2004-01-28 PMC N PMC343293 14748926.0 10.1186/1476-072x-3-2 kuybfc1y 0.372340 Lai_P_2004
39 Fontanini_2016 A methodology for optimal placement of sensors in enclosed environments: A dynamical systems approach Fontanini, Anthony D.; Vaidya, Umesh; Ganapathysubramanian, Baskar 2016 2016-05-01 PMC N PMC7126557 10.1016/j.buildenv.2016.02.003 vgq2nt3q 0.359125 Bastani_2012
40 Lai_P_2004 Understanding the Spatial Clustering of Severe Acute Respiratory Syndrome (SARS) in Hong Kong Lai, P.C.; Wong, C.M.; Hedley, A.J.; Lo, S.V.; Leung, P.Y.; Kong, J.; Leung, G.M. 2004 2004-07-27 COMM-USE N PMC1247620 15531441.0 10.1289/ehp.7117 ej795nks 0.358414
41 Bai_L_2020 Chinese experts’ consensus on the Internet of Things-aided diagnosis and treatment of coronavirus disease 2019 (COVID-19) Bai, Li; Yang, Dawei; Wang, Xun; Tong, Lin; Zhu, Xiaodan; Zhong, Nanshan; Bai, Chunxue; Powell, Charles A.; Chen, Rongchang; Zhou, Jian; Song, Yuanlin; Zhou, Xin; Zhu, Huili; Han, Baohui; Li, Qiang; Shi, Guochao; Li, Shengqing; Wang, Changhui; Qiu, Zhongmin; Zhang, Yong; Xu, Yu; Liu, Jie; Zhang, Ding; Wu, Chaomin; Li, Jing; Yu, Jinming; Wang, Jiwei; Dong, Chunling; Wang, Yaoli; Wang, Qi; Zhang, Lichuan; Zhang, Min; Ma, Xia; Zhao, Lin; Yu, Wencheng; Xu, Tao; Jin, Yang; Wang, Xiongbiao; Wang, Yuehong; Jiang, Yan; Chen, Hong; Xiao, Kui; Zhang, Xiaoju; Song, Zhenju; Zhang, Ziqiang; Wu, Xueling; Sun, Jiayuan; Shen, Yao; Ye, Maosong; Tu, Chunlin; Jiang, Jinjun; Yu, Hai; Tan, Fei 2020 2020-12-31 PMC Y PMC7148716 10.1016/j.ceh.2020.03.001 wyz5jyjh 0.341323
42 Asteris_2020 A Novel Heuristic Global Algorithm to Predict the COVID-19 Pandemic Trend Panagiotis G. Asteris; Maria Douvika; Christina Karamani; Athanasia Skentou; Tryfon Daras; Liborio Cavaleri; Danial Jahed Armaghani; Katerina Chlichlia; Theoklis E. Zaoutis 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.16.20068445 v6on5gv9 0.338268
43 Yang_2013 Mining Social Media and Web Searches For Disease Detection Yang, Y. Tony; Horneffer, Michael; DiLisio, Nicole 2013 2013-05-31 NONCOMM N PMC4140326 25170475.0 10.4081/jphr.2013.e4 k3ujatua 0.330485 Seo_D_2017, Freifeld_2008, Keller_2009
44 Zhu_H_2020 IoT PCR for pandemic disease detection and its spread monitoring Zhu, Hanliang; Podesva, Pavel; Liu, Xiaocheng; Zhang, Haoqing; Teply, Tomas; Xu, Ying; Chang, Honglong; Qian, Airong; Lei, Yingfeng; Li, Yu; Niculescu, Andreea; Iliescu, Ciprian; Neuzil, Pavel 2020 2020-01-15 None N PMC7125887 10.1016/j.snb.2019.127098 ityhcak7 0.329398 Lu_Q_2006, Collier_2007
45 Hu_P_2007 A Web-Based System for Infectious Disease Data Integration and Sharing: Evaluating Outcome, Task Performance Efficiency, User Information Satisfaction, and Usability Hu, Paul Jen-Hwa; Zeng, Daniel; Chen, Hsinchun; Larson, Catherine A.; Tseng, Chunju 2007 2007-01-01 PMC N PMC7122142 10.1007/978-3-540-72608-1_13 ygr1kv9r 0.328471 Freifeld_2008, Seo_D_2017
46 Janies_2011 The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases Janies, Daniel A.; Treseder, Travis; Alexandrov, Boyan; Habib, Farhat; Chen, Jennifer J.; Ferreira, Renato; Çatalyürek, Ümit; Varón, Andrés; Wheeler, Ward C. 2011 2011-01-04 PMC N PMC7162175 10.1111/j.1096-0031.2010.00314.x x0pke9am 0.326941
47 Bos_L_2014 How integration of global omics-data could help preparing for pandemics – a scent of influenza Bos, Lieuwe D. J.; de Jong, Menno D.; Sterk, Peter J.; Schultz, Marcus J. 2014 2014-04-22 COMM-USE N PMC4000993 24795745.0 10.3389/fgene.2014.00080 kusjwue0 0.326770 Collier_2007, Vazquez_2020
48 Hashemian_2010 Advanced Querying Features for Disease Surveillance Systems Hashemian, Mohammad R. 2010 2010-04-09 PMC N PMC3615752 23569575.0 10.5210/ojphi.v2i1.2847 91fhb66m 0.326170 Lu_Q_2006 Freifeld_2008, Chapman_2004
49 Englund_2011 Viral Infections in Immunocompromised Patients Englund, Janet; Feuchtinger, Tobias; Ljungman, Per 2011 2011-01-31 None N PMC3030455 21195305.0 10.1016/j.bbmt.2010.11.008 63ohetih 0.322084
50 Carrico_2005 Syndromic Surveillance: Hospital Emergency Department Participation During the Kentucky Derby Festival Carrico, Ruth; Goss, Linda 2005 2005-09-30 PMC N PMC7110958 15986027.0 10.1016/j.dmr.2005.04.003 n7p9jj0c 0.314845
51 Yamashita_2016 DGV: Dengue Genographic Viewer Yamashita, Akifumi; Sakamoto, Tetsuya; Sekizuka, Tsuyoshi; Kato, Kengo; Takasaki, Tomohiko; Kuroda, Makoto 2016 2016-06-07 COMM-USE N PMC4894901 27375595.0 10.3389/fmicb.2016.00875 e7xwb03g 0.309853 UNKNOWN_2018, UNKNOWN_2016
52 Wu_T_2020 Open-source analytics tools for studying the COVID-19 coronavirus outbreak Tianzhi Wu; Xijin Ge; Guangchuang Yu; Erqiang Hu 2020 2020-02-27 BioRxiv N 10.1101/2020.02.25.20027433 qtrquuvv 0.301401 Santillana_2014