Topic 05 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 25 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Guo_Y_2010 A novel way to numerically characterize DNA sequences and its application Guo, Ying; Wang, Yan‐fang; Zhang, Sheng‐li 2010 2010-11-03 PMC N PMC7168550 10.1002/qua.22872 sfuee2e9 0.948025 Chang_2011, Liao_2006, Saw_A_2019, Qi_Z_2018, Saw_A_2019
2 Chang_2011 Genome analysis with the conditional multinomial distribution profile Chang, Guisong; Wang, Tianming 2011 2011-02-21 PMC N PMC7094119 21129383.0 10.1016/j.jtbi.2010.11.034 1ef1cxc8 0.925165 Zheng_2008, Qi_Z_2018, Liu_L_2012, Saw_A_2019
3 Zhao_2011 A novel clustering method via nucleotide-based Fourier power spectrum analysis Zhao, Bo; Duan, Victor; Yau, Stephen S.-T. 2011 2011-06-21 PMC N PMC7094093 21443881.0 10.1016/j.jtbi.2011.03.029 7u5frg8w 0.924671 Chang_2011, Liao_2006, Saw_A_2019, Qi_Z_2018 Hoang_2015, Wei_D_2012, Dong_2019
4 Yu_C_2010 A Novel Construction of Genome Space with Biological Geometry Yu, Chenglong; Liang, Qian; Yin, Changchuan; He, Rong L.; Yau, Stephen S.-T. 2010 2010-04-01 NONCOMM N PMC2885272 20360268.0 10.1093/dnares/dsq008 3c4dttrt 0.924172 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018
5 Xie_G_2011 Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications Xie, Guosen; Mo, Zhongxi 2011 2011-01-21 PMC N PMC7126940 20969878.0 10.1016/j.jtbi.2010.10.018 5cxaiw4k 0.915560 Chang_2011, Liao_2006, Qi_Z_2018, Zheng_2008, Saw_A_2019 Yu_J_2009, Zou_S_2014
6 Zheng_2008 A complexity-based measure and its application to phylogenetic analysis Zheng, Xiaoqi; Li, Chun; Wang, Jun 2008 2008-12-09 PMC N PMC7088198 32214590.0 10.1007/s10910-008-9511-3 g6obo798 0.909458 Chang_2011, Saw_A_2019, Lee_C_2017, Chang_2011 Zheng_2009, Banks_2006, Yu_Z_2010
7 Liao_2006 Coronavirus phylogeny based on triplets of nucleic acids bases Liao, Bo; Liu, Yanshu; Li, Renfa; Zhu, Wen 2006 2006-04-15 PMC N PMC7094651 10.1016/j.cplett.2006.01.030 zocunore 0.858189 Qi_Z_2018, Chang_2011, Saw_A_2019, Dai_Q_2012
8 Zheng_2009 A Poisson model of sequence comparison and its application to coronavirus phylogeny Zheng, Xiaoqi; Qin, Yufang; Wang, Jun 2009 2009-02-28 PMC N PMC7094598 19073197.0 10.1016/j.mbs.2008.11.006 8qnq02gd 0.854921 Chang_2011, Zheng_2008, Saw_A_2019, Qi_Z_2018
9 Khan_2008 Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers Khan, Haseeb A.; Arif, Ibrahim A.; Bahkali, Ali H.; Al Farhan, Ahmad H.; Al Homaidan, Ali A. 2008 2008-10-06 COMM-USE N PMC2614192 19204824.0 r97x0paz 0.832959 Zheng_2008, Saw_A_2019, Chang_2011 Banks_2006
10 Liu_L_2012 A relative Lempel–Ziv complexity: Application to comparing biological sequences Liu, Liwei; Li, Dongbo; Bai, Fenglan 2012 2012-03-19 PMC N PMC7094452 10.1016/j.cplett.2012.01.061 lz0gy9el 0.832301 Chang_2011, Saw_A_2019, Qi_Z_2018, Lee_C_2017
11 Deng_2014 DV-Curve Representation of Protein Sequences and Its Application Deng, Wei; Luan, Yihui 2014 2014-05-08 COMM-USE N PMC4034481 24899916.0 10.1155/2014/203871 8j04y50s 0.825329 Chang_2011, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012
12 Wang_2014 ADLD: A Novel Graphical Representation of Protein Sequences and Its Application Wang, Lei; Peng, Hui; Zheng, Jinhua 2014 2014-10-30 COMM-USE N PMC4230005 25530796.0 10.1155/2014/959753 dc45h6v3 0.821816 Chang_2011, Qi_Z_2018, Saw_A_2019, Liu_L_2012, Dai_Q_2012 Deng_2014, Wu_C_2018, Li_C_2018, Qi_Z_2018
13 Feng_2010 New method for comparing DNA primary sequences based on a discrimination measure Feng, Jie; Hu, Yong; Wan, Ping; Zhang, Aibing; Zhao, Weizhong 2010 2010-10-21 PMC N PMC7094107 20688082.0 10.1016/j.jtbi.2010.07.040 jvfjf7aw 0.817249 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Chang_2011, Saw_A_2019
14 Yu_J_2009 TN curve: A novel 3D graphical representation of DNA sequence based on trinucleotides and its applications Yu, Jia-Feng; Sun, Xiao; Wang, Ji-Hua 2009 2009-12-07 PMC N PMC7094124 19679137.0 10.1016/j.jtbi.2009.08.005 i5fs2yye 0.807836 Chang_2011, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012 Zou_S_2014, Xie_G_2011, Deng_2014
15 Qi_Z_2009 Classification analysis of dual nucleotides using dimension reduction Qi, Zhao-Hui; Wang, Jian-Min; Qi, Xiao-Qin 2009 2009-09-07 PMC N PMC7126582 19481099.0 10.1016/j.jtbi.2009.05.011 5svtmk4a 0.806040 Chang_2011, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012
16 Hoang_2015 A new method to cluster DNA sequences using Fourier power spectrum Hoang, Tung; Yin, Changchuan; Zheng, Hui; Yu, Chenglong; Lucy He, Rong; Yau, Stephen S.-T. 2015 2015-05-07 PMC N PMC7094126 25747773.0 10.1016/j.jtbi.2015.02.026 nw3tybw9 0.804884 Chang_2011, Saw_A_2019, Qi_Z_2018, Dai_Q_2012 Zhao_2011, Wei_D_2012, Dong_2019
17 Wei_D_2012 A novel hierarchical clustering algorithm for gene sequences Wei, Dan; Jiang, Qingshan; Wei, Yanjie; Wang, Shengrui 2012 2012-07-23 COMM-USE N PMC3443659 22823405.0 10.1186/1471-2105-13-174 61djk4bs 0.776844 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018, Dai_Q_2012 Saw_A_2019, Dong_2019, Zhao_2011
18 Jiang_2010 The calculation of information and organismal complexity Jiang, Yun; Xu, Cunshuan 2010 2010-10-12 COMM-USE N PMC2973933 20937149.0 10.1186/1745-6150-5-59 5z3s5pjl 0.741336 Chang_2011, Qi_Z_2018, Liou_2013
19 Zuo_G_2011 Jackknife and Bootstrap Tests of the Composition Vector Trees Zuo, Guanghong; Xu, Zhao; Yu, Hongjie; Hao, Bailin 2011 2011-03-05 NONCOMM N PMC5054193 21382595.0 10.1016/s1672-0229(10)60028-9 vm5zjr64 0.741286 Saw_A_2019, Chang_2011, Liou_2013, Kinene_2016 Banks_2006, Redelings_2007
20 Yu_Z_2010 Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model Yu, Zu-Guo; Chu, Ka Hou; Li, Chi Pang; Anh, Vo; Zhou, Li-Qian; Wang, Roger Wei 2010 2010-06-22 COMM-USE N PMC2898692 20565983.0 10.1186/1471-2148-10-192 gf718lbl 0.727222 Zheng_2008, Chang_2011, Lee_C_2017
21 Zou_S_2014 A 2D graphical representation of the sequences of DNA based on triplets and its application Zou, Sai; Wang, Lei; Wang, Junfeng 2014 2014-01-02 COMM-USE N PMC3896961 24383852.0 10.1186/1687-4153-2014-1 gkek599u 0.718271 Chang_2011, Qi_Z_2018, Liao_2006, Dai_Q_2012, Saw_A_2019 Yu_J_2009, Xie_G_2011
22 Wei_C_2011 Identification and Typing of Human Enterovirus: A Genomic Barcode Approach Wei, Chengguo; Wang, Guoqing; Chen, Xin; Huang, Honglan; Liu, Bin; Xu, Ying; Li, Fan 2011 2011-10-14 COMM-USE N PMC3194813 22022592.0 10.1371/journal.pone.0026296 qkymwvwb 0.713910 Chang_2011, Zheng_2008, Lee_C_2017, Saw_A_2019
23 Abd_Elwahaab_2019 A Statistical Similarity/Dissimilarity Analysis of Protein Sequences Based on a Novel Group Representative Vector Abd Elwahaab, Marwa A.; Abo-Elkhier, Mervat M.; Abo el Maaty, Moheb I. 2019 2019-05-08 COMM-USE N PMC6530227 31205946.0 10.1155/2019/8702968 9t3kneoo 0.713855 Chang_2011, Qi_Z_2018, Saw_A_2019, Zheng_2008, Liu_L_2012 Han_L_2005, Wei_D_2012, Abo-Elkhier_2019, Wu_C_2018
24 Qi_Z_2010 New method for global alignment of 2 DNA sequences by the tree data structure Qi, Zhao-Hui; Qi, Xiao-Qin; Liu, Chen-Chen 2010 2010-03-21 PMC N PMC7094160 20025888.0 10.1016/j.jtbi.2009.12.012 88eqc5ah 0.711672 Saw_A_2019, Saw_A_2019, Qi_Z_2018, Feng_2010 Song_2005, Saw_A_2019, Dong_2019
25 Li_Y_2017 A novel fast vector method for genetic sequence comparison Li, Yongkun; He, Lily; Lucy He, Rong; Yau, Stephen S.-T. 2017 2017-09-22 None N PMC5610321 28939913.0 10.1038/s41598-017-12493-2 jxd60j4o 0.709786 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018, Dai_Q_2012
26 Carreño-Durán_2013 Design of a set of probes with high potential for influenza virus epidemiological surveillance Carreño-Durán, Luis R; Larios-Serrato, V; Jaimes-Díaz, Hueman; Pérez-Cervantes, Hilda; Zepeda-López, Héctor; Sánchez-Vallejo, Carlos Javier; Olguín-Ruiz, Gabriela Edith; Maldonado-Rodríguez, Rogelio; Méndez-Tenorio, Alfonso 2013 2013-04-30 PMC N PMC3670124 23750091.0 10.6026/97320630009414 xr0uhccv 0.701002 Chang_2011, Zheng_2008, Lee_C_2017
27 Lespinats_2011 ColorPhylo: A Color Code to Accurately Display Taxonomic Classifications Lespinats, Sylvain; Fertil, Bernard 2011 2011-11-13 PMC N PMC3255521 22253532.0 10.4137/ebo.s7565 hohrbxyj 0.683293 Chang_2011, Qi_Z_2018, Dai_Q_2012, Feng_2010
28 Dai_Q_2012 Sequence comparison via polar coordinates representation and curve tree Dai, Qi; Guo, Xiaodong; Li, Lihua 2012 2012-01-07 PMC N PMC7094155 22001081.0 10.1016/j.jtbi.2011.09.030 2lg8i9r1 0.682404 Chang_2011, Saw_A_2019, Qi_Z_2018, Liao_2006 Song_2005, Li_C_2018, Wu_C_2018, Deng_2014
29 Dai_Q_2009 Using Gaussian model to improve biological sequence comparison Dai, Qi; Liu, Xiaoqing; Li, Lihua; Yao, Yuhua; Han, Bin; Zhu, Lei 2009 2009-05-28 PMC N PMC7166749 19479732.0 10.1002/jcc.21322 yjon4plr 0.672273 Chang_2011, Saw_A_2019, Qi_Z_2018, Lee_C_2017, Dai_Q_2012
30 Ai_Y_2013 GenomeFingerprinter: The Genome Fingerprint and the Universal Genome Fingerprint Analysis for Systematic Comparative Genomics Ai, Yuncan; Ai, Hannan; Meng, Fanmei; Zhao, Lei 2013 2013-10-29 COMM-USE N PMC3812135 24205026.0 10.1371/journal.pone.0077912 b8jlvkg7 0.671217 Chang_2011, Dai_Q_2012, Zheng_2008, Qi_Z_2018
31 Haibin_2004 Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach Haibin, Wei; Ji, Qi; Bailin, Hao 2004 2004-01-01 PMC N PMC7088628 15493472.0 10.1360/03yc0137 uukrqp7j 0.669157 Zheng_2008, Chang_2011, Lee_C_2017, Saw_A_2019, Kinene_2016
32 Kim_K_2007 Selecting Genotyping Oligo Probes Via Logical Analysis of Data Kim, Kwangsoo; Ryoo, Hong Seo 2007 2007-01-01 PMC N PMC7122177 10.1007/978-3-540-72665-4_8 9rx4jlw8 0.639478 Kim_K_2007, Chang_2011 Kim_K_2007
33 Yu_Z_2010 Proper Distance Metrics for Phylogenetic Analysis Using Complete Genomes without Sequence Alignment Yu, Zu-Guo; Zhan, Xiao-Wen; Han, Guo-Sheng; Wang, Roger W.; Anh, Vo; Chu, Ka Hou 2010 2010-03-18 COMM-USE N PMC2869232 20480005.0 10.3390/ijms11031141 a0pzw26l 0.619631 Chang_2011, Zheng_2008, Saw_A_2019, Qi_Z_2018 Yu_Z_2010
34 Abo-Elkhier_2019 Measuring Similarity among Protein Sequences Using a New Descriptor Abo-Elkhier, Mervat M.; Abd Elwahaab, Marwa A.; Abo El Maaty, Moheb I. 2019 2019-11-22 COMM-USE N PMC6893242 31886192.0 10.1155/2019/2796971 41atidai 0.619009 Chang_2011, Qi_Z_2018, Lee_C_2017, Dai_Q_2012, Saw_A_2019 Li_C_2018, Lee_B_2009, Wu_C_2018
35 Dong_2019 A Novel Approach to Clustering Genome Sequences Using Inter-nucleotide Covariance Dong, Rui; He, Lily; He, Rong Lucy; Yau, Stephen S.-T. 2019 2019-04-09 COMM-USE N PMC6465635 31024610.0 10.3389/fgene.2019.00234 buc4dd5y 0.609518 Lee_C_2017, Chang_2011, Saw_A_2019, Saw_A_2019, Dai_Q_2012 Yu_Z_2010, Pessia_2015
36 Saw_A_2019 Alignment-free method for DNA sequence clustering using Fuzzy integral similarity Saw, Ajay Kumar; Raj, Garima; Das, Manashi; Talukdar, Narayan Chandra; Tripathy, Binod Chandra; Nandi, Soumyadeep 2019 2019-03-06 None N PMC6403383 30842590.0 10.1038/s41598-019-40452-6 qaqvg453 0.589054 Saw_A_2019, Chang_2011, Lee_C_2017, Dai_Q_2012 Wei_D_2012, Dong_2019
37 Zheng_2005 Coronavirus phylogeny based on a geometric approach Zheng, Wen-Xin; Chen, Ling-Ling; Ou, Hong-Yu; Gao, Feng; Zhang, Chun-Ting 2005 2005-08-31 PMC Y PMC7111192 15890535.0 10.1016/j.ympev.2005.03.030 t89235t3 0.580285 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018, Saw_A_2019
38 Zhang_2014 A Brief Review: The Z-curve Theory and its Application in Genome Analysis Zhang, Ren; Zhang, Chun-Ting 2014 2014-04-23 NONCOMM N PMC4009844 24822026.0 10.2174/1389202915999140328162433 f1j6uhmj 0.580285 Chang_2011, Dai_Q_2012, Lee_C_2017, Zheng_2008, Qi_Z_2018
39 Xie_X_2012 Protein sequence analysis based on hydropathy profile of amino acids Xie, Xiao-li; Zheng, Li-fei; Yu, Ying; Liang, Li-ping; Guo, Man-cai; Song, John; Yuan, Zhi-fa 2012 2012-01-27 PMC N PMC3274743 22302429.0 10.1631/jzus.b1100052 g1ob16b9 0.574073 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012
40 Kim_K_2007 A LAD-based method for selecting short oligo probes for genotyping applications Kim, Kwangsoo; Ryoo, Hong Seo 2007 2007-06-01 PMC N PMC7080176 10.1007/s00291-007-0089-0 nfxcqsc2 0.551043 Kim_K_2007, Chang_2011, Mendizabal-Ruiz_2018 Kim_K_2007
41 Lee_C_2017 A Pairwise Alignment Algorithm for Long Sequences of High Similarity Lee, Chien-Tai; Peng, Sheng-Lung 2017 2017-10-13 PMC N PMC7123042 10.1007/978-981-10-5508-9_27 t1e0tr4w 0.544936 Saw_A_2019, Chang_2011, Dai_Q_2012, Liu_L_2012 Saw_A_2019, Song_2005
42 Dai_Q_2013 Study of LZ-word distribution and its application for sequence comparison Dai, Qi; Yan, Zhaofang; Shi, Zhuoxing; Liu, Xiaoqing; Yao, Yuhua; He, Pingan 2013 2013-11-07 PMC N PMC7094135 23876763.0 10.1016/j.jtbi.2013.07.008 y7697hx8 0.540396 Saw_A_2019, Chang_2011, Qi_Z_2018, Liu_L_2012, Lee_C_2017 Liu_L_2012, Wang_2008, Zhang_2013
43 Wang_2008 WSE, a new sequence distance measure based on word frequencies Wang, Jun; Zheng, Xiaoqi 2008 2008-09-30 PMC N 10.1016/j.mbs.2008.06.001 d6wcgkln 0.532524 Chang_2011, Qi_Z_2018, Zheng_2009, Zheng_2008, Saw_A_2019 Dai_Q_2013, Wu_C_2018
44 Zuo_G_2015 CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy Zuo, Guanghong; Hao, Bailin 2015 2015-11-10 None N PMC4678791 26563468.0 10.1016/j.gpb.2015.08.004 qutbqcwb 0.522340 Zheng_2008, Chang_2011, Lee_C_2017, Xu_Z_2009 Xu_Z_2009, Yu_Z_2010
45 Banks_2006 Dissecting the ancient rapid radiation of microgastrine wasp genera using additional nuclear genes Banks, Jonathan C.; Whitfield, James B. 2006 2006-12-31 PMC N PMC7129091 16854601.0 10.1016/j.ympev.2006.06.001 ne9d0siv 0.518192 Chang_2011, Zheng_2008, Kinene_2016
46 Xu_Z_2009 CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes Xu, Zhao; Hao, Bailin 2009 2009-07-01 NONCOMM N PMC2703908 19398429.0 10.1093/nar/gkp278 02opdk0m 0.516041 Montgomery_2004, Lee_C_2017, Chang_2011 Yu_Z_2010
47 Gardner_2005 Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays Gardner, Shea N; Wagner, Mark C 2005 2005-05-16 COMM-USE N PMC1156889 15904493.0 10.1186/1471-2164-6-73 ckby80vf 0.514324 Chang_2011, Lee_C_2017, Saw_A_2019, Saw_A_2019
48 Qi_Z_2018 Novel Method of 3-Dimensional Graphical Representation for Proteins and Its Application Qi, Zhao-Hui; Li, Ke-Cheng; Ma, Jin-Long; Yao, Yu-Hua; Liu, Ling-Yun 2018 2018-06-12 NONCOMM N PMC6024350 29977111.0 10.1177/1176934318777755 fvuwick5 0.490519 Chang_2011, Saw_A_2019, Dai_Q_2012, Liao_2006 Deng_2014, Li_C_2018
49 Chang_2011 Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring Chang, Guisong; Wang, Tianming 2011 2011-03-10 PMC N PMC7088358 21461804.0 10.1007/s10930-011-9318-0 le7v89mp 0.485479 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018 Yu_Z_2010
50 Thomas_2007 GraphDNA: a Java program for graphical display of DNA composition analyses Thomas, Jamie M; Horspool, Daniel; Brown, Gordon; Tcherepanov, Vasily; Upton, Chris 2007 2007-01-23 COMM-USE N PMC1783863 17244370.0 10.1186/1471-2105-8-21 51khqqwx 0.476222 Chang_2011, Lee_C_2017, Dai_Q_2012
51 Höhl_2007 Is Multiple-Sequence Alignment Required for Accurate Inference of Phylogeny? Höhl, Michael; Ragan, Mark A. 2007 2007-04-23 PMC N PMC7107264 17454975.0 10.1080/10635150701294741 lqviqh3m 0.469343 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018
52 Ragonnet-Cronin_2013 Automated analysis of phylogenetic clusters Ragonnet-Cronin, Manon; Hodcroft, Emma; Hué, Stéphane; Fearnhill, Esther; Delpech, Valerie; Brown, Andrew J Leigh; Lycett, Samantha 2013 2013-11-06 None N PMC4228337 24191891.0 10.1186/1471-2105-14-317 qi630tpo 0.460269 Chang_2011, Zheng_2008, Saw_A_2019, Lee_C_2017
53 Cheng_2012 Segmentation of DNA using simple recurrent neural network Cheng, Wei-Chen; Huang, Jau-Chi; Liou, Cheng-Yuan 2012 2012-02-29 PMC N PMC7126336 10.1016/j.knosys.2011.09.001 7qc1lqyp 0.460222 Chang_2011, Qi_Z_2018, Lee_C_2017
54 Holmes_2017 Solving the master equation for Indels Holmes, Ian H. 2017 2017-05-12 COMM-USE N PMC5427538 28494756.0 10.1186/s12859-017-1665-1 ff6kor0c 0.455611 Saw_A_2019, Chang_2011, Kinene_2016, Redelings_2007, Lee_C_2017 Redelings_2007, Pessia_2015
55 Brodie_2004 Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments Brodie, Ryan; Smith, Alex J; Roper, Rachel L; Tcherepanov, Vasily; Upton, Chris 2004 2004-07-14 PMC N PMC481056 15253776.0 10.1186/1471-2105-5-96 lwla5ugt 0.452782 Montgomery_2004, Chang_2011, Lee_C_2017, Wang_2006
56 Gatherer_2007 Genome Signatures, Self-Organizing Maps and Higher Order Phylogenies: A Parametric Analysis Gatherer, Derek 2007 2007-09-17 COMM-USE N PMC2684143 19468314.0 hltgn9aj 0.443645 Chang_2011, Lee_C_2017, Qi_Z_2018, Dai_Q_2012, Saw_A_2019 Pessia_2015
57 Gorbalenya_2008 Phylogeny of Viruses Gorbalenya, A.E. 2008 2008-12-31 PMC N PMC7150205 10.1016/b978-012374410-4.00712-3 5yk1j4ms 0.438808 Zheng_2008, Chang_2011, Kinene_2016, Lee_C_2017
58 Saw_A_2019 Alignment-free similarity analysis for protein sequences based on fuzzy integral Saw, Ajay Kumar; Tripathy, Binod Chandra; Nandi, Soumyadeep 2019 2019-02-26 None N PMC6391537 30808983.0 10.1038/s41598-019-39477-8 sgw66xhn 0.419825 Saw_A_2019, Chang_2011, Qi_Z_2018, Lee_C_2017 Saw_A_2019, Xie_X_2012, Wu_C_2018, Li_C_2018
59 Nandy_2015 Chapter 5 The GRANCH Techniques for Analysis of DNA, RNA and Protein Sequences Nandy, Ashesh 2015 2015-12-31 PMC N PMC7151884 10.1016/b978-1-68108-053-6.50005-3 7kiahjyy 0.412635 Sen_D_2018
60 Mendizabal-Ruiz_2018 Genomic signal processing for DNA sequence clustering Mendizabal-Ruiz, Gerardo; Román-Godínez, Israel; Torres-Ramos, Sulema; Salido-Ruiz, Ricardo A.; Vélez-Pérez, Hugo; Morales, J. Alejandro 2018 2018-01-24 None N PMC5786891 29379686.0 10.7717/peerj.4264 qy4kirx1 0.404540 Chang_2011, Qi_Z_2018, Liou_2013 Zhao_2011, Hoang_2015, Wei_D_2012, Mu_Z_2019
61 Sen_D_2018 Graphical representation methods: How well do they discriminate between homologous gene sequences? Sen, Dwaipayan; Roy, Proyasha; Nandy, Ashesh; Basak, Subhash C.; Das, Sukhen 2018 2018-09-24 PMC N PMC7116999 10.1016/j.chemphys.2018.07.031 clagd6rh 0.396945 Chang_2011 Liao_2006, Qi_Z_2018
62 Hou_W_2017 A new method to analyze protein sequence similarity using Dynamic Time Warping Hou, Wenbing; Pan, Qiuhui; Peng, Qianying; He, Mingfeng 2017 2017-03-31 PMC N PMC7125777 27974244.0 10.1016/j.ygeno.2016.12.002 oim1ifw0 0.393037 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Wu_C_2018, Abo-Elkhier_2019, Li_C_2018, Hoang_2015
63 Redelings_2007 Incorporating indel information into phylogeny estimation for rapidly emerging pathogens Redelings, Benjamin D; Suchard, Marc A 2007 2007-03-14 COMM-USE N PMC1853084 17359539.0 10.1186/1471-2148-7-40 bkfkmtld 0.390879 Chang_2011, Saw_A_2019, Qi_Z_2018, Zheng_2008
64 Liou_2013 Structural Complexity of DNA Sequence Liou, Cheng-Yuan; Tseng, Shen-Han; Cheng, Wei-Chen; Tsai, Huai-Ying 2013 2013-04-04 COMM-USE N PMC3638703 23662161.0 10.1155/2013/628036 w8luu86h 0.373698 Qi_Z_2018, Chang_2011, Lee_C_2017 Chang_2011, Song_2005
65 Dong_2017 Virus Database and Online Inquiry System Based on Natural Vectors Dong, Rui; Zheng, Hui; Tian, Kun; Yau, Shek-Chung; Mao, Weiguang; Yu, Wenping; Yin, Changchuan; Yu, Chenglong; He, Rong Lucy; Yang, Jie; Yau, Stephen ST 2017 2017-12-17 NONCOMM N PMC5751915 29308007.0 10.1177/1176934317746667 09a32vyg 0.372045 UNKNOWN_2018, Xu_Z_2009 Hirahata_2006, Han_L_2005
66 Lam_H_2017 Improved Algorithmic Complexity for the 3SEQ Recombination Detection Algorithm Lam, Ha Minh; Ratmann, Oliver; Boni, Maciej F 2017 2017-10-03 NONCOMM N PMC5850291 29029186.0 10.1093/molbev/msx263 ev6acl7b 0.370216 Chang_2011, Lee_C_2017, Saw_A_2019, Feng_2010, Dai_Q_2012 Pessia_2015
67 Montgomery_2004 Sockeye: A 3D Environment for Comparative Genomics Montgomery, Stephen B.; Astakhova, Tamara; Bilenky, Mikhail; Birney, Ewan; Fu, Tony; Hassel, Maik; Melsopp, Craig; Rak, Marcin; Robertson, A. Gordon; Sleumer, Monica; Siddiqui, Asim S.; Jones, Steven J.M. 2004 2004-05-01 None N PMC479126 15123592.0 10.1101/gr.1890304 ts1eb8fk 0.361660 Chang_2011, Wang_2006, Dai_Q_2012 Wang_2006, Song_2005
68 Li_K_2010 ANDES: Statistical tools for the ANalyses of DEep Sequencing Li, Kelvin; Venter, Eli; Yooseph, Shibu; Stockwell, Timothy B; Eckerle, Lance D; Denison, Mark R; Spiro, David J; Methé, Barbara A 2010 2010-07-15 COMM-USE N PMC2921379 20633290.0 10.1186/1756-0500-3-199 2n5vetzw 0.358860 Chang_2011, Saw_A_2019, Saw_A_2019, Dai_Q_2012
69 Kinene_2016 Rooting Trees, Methods for Kinene, T.; Wainaina, J.; Maina, S.; Boykin, L.M. 2016 2016-12-31 PMC N PMC7149615 10.1016/b978-0-12-800049-6.00215-8 3atcqejc 0.339225 Zheng_2008, Chang_2011, Chang_2011 HESS_2007, Banks_2006
70 Wu_C_2018 A novel model for protein sequence similarity analysis based on spectral radius Wu, Chuanyan; Gao, Rui; De Marinis, Yang; Zhang, Yusen 2018 2018-06-07 PMC N PMC7094169 29524440.0 10.1016/j.jtbi.2018.03.001 f6lfykot 0.332955 Saw_A_2019, Chang_2011, Qi_Z_2018, Dai_Q_2012, Liao_2006 Li_C_2018, Abo-Elkhier_2019, Lee_B_2009, Abd_Elwahaab_2019
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