| 1 |
Zhou_2011 |
The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein–protein interaction mechanism |
Zhou, Guo-Ping |
2011 |
2011-09-07 |
PMC |
N |
PMC7094099 |
21718705.0 |
10.1016/j.jtbi.2011.06.006 |
3ismyb4u |
0.721224 |
Deng_2006, Ivarsson_2012, UNKNOWN_1987, Langosch_2011 |
Wang_2013 |
| 2 |
Antanasijevic_2020 |
Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography |
Antanasijevic, Aleksandar; Durst, Matthew A.; Lavie, Arnon; Caffrey, Michael |
2020 |
2020-01-01 |
PMC |
N |
PMC7111647 |
31689502.0 |
10.1016/j.jsb.2019.107412 |
rdd99ct5 |
0.689056 |
Ivarsson_2012, Smith_2003, UNKNOWN_1987 |
|
| 3 |
Fan_Q_2017 |
Structure-Based Mutations in the Herpes Simplex Virus 1 Glycoprotein B Ectodomain Arm Impart a Slow-Entry Phenotype |
Fan, Qing; Kopp, Sarah J.; Connolly, Sarah A.; Longnecker, Richard |
2017 |
2017-05-16 |
COMM-USE |
N |
PMC5433099 |
28512095.0 |
10.1128/mbio.00614-17 |
1v6nf28a |
0.560129 |
Gomis-Rüth_2003 |
|
| 4 |
Wu_Y_2014 |
Bat-derived influenza-like viruses H17N10 and H18N11 |
Wu, Ying; Wu, Yan; Tefsen, Boris; Shi, Yi; Gao, George F. |
2014 |
2014-04-30 |
PMC |
N |
PMC7127364 |
24582528.0 |
10.1016/j.tim.2014.01.010 |
jaciqq54 |
0.550865 |
|
|
| 5 |
Antanasijevic_2013 |
Inhibition of Influenza H7 Hemagglutinin-Mediated Entry |
Antanasijevic, Aleksandar; Cheng, Han; Wardrop, Duncan J.; Rong, Lijun; Caffrey, Michael |
2013 |
2013-10-23 |
COMM-USE |
N |
PMC3806803 |
24194835.0 |
10.1371/journal.pone.0076363 |
5u2j4xdi |
0.547555 |
Gomis-Rüth_2003 |
Antanasijevic_2020 |
| 6 |
Koellhoffer_2014 |
Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species |
Koellhoffer, Jayne F.; Dai, Zhou; Malashkevich, Vladimir N.; Stenglein, Mark D.; Liu, Yanyun; Toro, Rafael; S. Harrison, Joseph; Chandran, Kartik; DeRisi, Joseph L.; Almo, Steven C.; Lai, Jonathan R. |
2014 |
2014-04-03 |
None |
N |
PMC3951589 |
24333483.0 |
10.1016/j.jmb.2013.12.009 |
5j3ip4ts |
0.541354 |
Gomis-Rüth_2003, UNKNOWN_1987 |
Koellhoffer_2012, Voß_D_2009 |
| 7 |
Wu_G_2007 |
Prediction of mutations engineered by randomness in H5N1 hemagglutinins of influenza A virus |
Wu, G.; Yan, S. |
2007 |
2007-11-02 |
PMC |
N |
PMC7088403 |
17973072.0 |
10.1007/s00726-007-0602-4 |
rx0os4ke |
0.536123 |
|
|
| 8 |
Deng_2006 |
Antiparallel Four-Stranded Coiled Coil Specified by a 3-3-1 Hydrophobic Heptad Repeat |
Deng, Yiqun; Liu, Jie; Zheng, Qi; Eliezer, David; Kallenbach, Neville R.; Lu, Min |
2006 |
2006-02-02 |
PMC |
N |
PMC7126439 |
16472744.0 |
10.1016/j.str.2005.10.010 |
rei5hea5 |
0.522232 |
Zhang_2018, Smith_2003, Ivarsson_2012 |
|
| 9 |
Hebditch_2020 |
protein-sol pKa: prediction of electrostatic frustration, with application to coronaviruses |
Max Hebditch; Jim Warwicker |
2020 |
2020-04-22 |
BioRxiv |
N |
|
|
10.1101/2020.04.21.053967 |
xwbjmvvj |
0.518731 |
Ivarsson_2012, Langosch_2011, Kinjo_2012, Yang_2012, Smith_2003 |
|
| 10 |
Vani_2009 |
Structural basis for the function of anti-idiotypic antibody in immune memory |
Vani, J.; Chatterjee, Jhinuk; Shaila, M.S.; Nayak, R.; Chandra, Nagasuma R. |
2009 |
2009-03-31 |
PMC |
N |
PMC7126318 |
19157554.0 |
10.1016/j.molimm.2008.11.019 |
creoyran |
0.498735 |
Ivarsson_2012 |
|
| 11 |
Polanco_2018 |
On the Regularities of the Polar Profiles of Proteins Related to Ebola Virus Infection and their Functional Domains |
Polanco, Carlos; Samaniego Mendoza, José Lino; Buhse, Thomas; Uversky, Vladimir N.; Bañuelos Chao, Ingrid Paola; Bañuelos Cedano, Marcela Angola; Tavera, Fernando Michel; Tavera, Daniel Michel; Falconi, Manuel; Ponce de León, Abelardo Vela |
2018 |
2018-03-06 |
PMC |
N |
PMC7090660 |
29511990.0 |
10.1007/s12013-018-0839-4 |
6tkrctgc |
0.495927 |
UNKNOWN_1987, Callison_1999 |
Kumar_2013 |
| 12 |
Xu_Q_2018 |
Sialic acid involves in the interaction between ovomucin and hemagglutinin and influences the antiviral activity of ovomucin |
Xu, Qi; Shan, Yuanyuan; Wang, Ning; Liu, Yaping; Zhang, Maojie; Ma, Meihu |
2018 |
2018-11-30 |
PMC |
N |
PMC7124660 |
30071221.0 |
10.1016/j.ijbiomac.2018.07.186 |
wig4wdno |
0.490843 |
Gomis-Rüth_2003 |
|
| 13 |
Wu_J_2016 |
Biochemical and structural characterization of the interface mediating interaction between the influenza A virus non-structural protein-1 and a monoclonal antibody |
Wu, Jianping; Mok, Chee-Keng; Chow, Vincent Tak Kwong; Yuan, Y. Adam; Tan, Yee-Joo |
2016 |
2016-09-16 |
COMM-USE |
N |
PMC5025888 |
27633136.0 |
10.1038/srep33382 |
486sk4wc |
0.447736 |
|
|
| 14 |
Lee_C_2019 |
An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B Cells |
Lee, Cheng-Chung; Yang, Chih-Ya; Lin, Li-Ling; Ko, Tzu-Ping; Chang, Alarng Hsun-Lang; Chang, Stanley Shi-Chung; Wang, Andrew H.-J. |
2019 |
2019-03-14 |
COMM-USE |
N |
PMC6418199 |
30872685.0 |
10.1038/s41598-019-40937-4 |
c2qdkz3o |
0.444248 |
|
Han_T_2011 |
| 15 |
Hodges_2009 |
Identification of a Unique “Stability Control Region” that Controls Protein Stability of Tropomyosin: A Two-Stranded α-Helical Coiled-Coil |
Hodges, Robert S.; Mills, Janine; McReynolds, Susanna; Kirwan, J. Paul; Tripet, Brian; Osguthorpe, David |
2009 |
2009-09-01 |
PMC |
N |
PMC2756485 |
19627992.0 |
10.1016/j.jmb.2009.07.039 |
y2q9lw4f |
0.441051 |
UNKNOWN_1987, Callison_1999, Yang_2012, UNKNOWN_1993 |
Faaberg_1996 |
| 16 |
Gong_2016 |
Structural Insights into the Niemann-Pick C1 (NPC1)-Mediated Cholesterol Transfer and Ebola Infection |
Gong, Xin; Qian, Hongwu; Zhou, Xinhui; Wu, Jianping; Wan, Tao; Cao, Pingping; Huang, Weiyun; Zhao, Xin; Wang, Xudong; Wang, Peiyi; Shi, Yi; Gao, George F.; Zhou, Qiang; Yan, Nieng |
2016 |
2016-06-02 |
None |
N |
PMC7111323 |
27238017.0 |
10.1016/j.cell.2016.05.022 |
h3lvg15d |
0.418734 |
UNKNOWN_1987 |
|
| 17 |
Heal_2018 |
Applying graph theory to protein structures: an Atlas of coiled coils |
Heal, Jack W; Bartlett, Gail J; Wood, Christopher W; Thomson, Andrew R; Woolfson, Derek N |
2018 |
2018-10-01 |
COMM-USE |
N |
PMC6157074 |
29722888.0 |
10.1093/bioinformatics/bty347 |
pq1vaknj |
0.406654 |
|
Apgar_2008 |
| 18 |
Koellhoffer_2012 |
Crystal Structure of the Marburg Virus GP2 Core Domain in its Post-Fusion Conformation |
Koellhoffer, Jayne F.; Malashkevich, Vladimir N.; Harrison, Joseph S.; Toro, Rafael; Bhosle, Rahul C.; Chandran, Kartik; Almo, Steven C.; Lai, Jonathan R. |
2012 |
2012-09-19 |
PMC |
N |
PMC3464016 |
22935026.0 |
10.1021/bi300976m |
k2j2uqfh |
0.403266 |
Gomis-Rüth_2003, UNKNOWN_1987, Chang_2000 |
Harrison_2011, Yin_H_2006 |
| 19 |
Chen_2012 |
The Evolutionary Pattern of Glycosylation Sites in Influenza Virus (H5N1) Hemagglutinin and Neuraminidase |
Chen, Wentian; Zhong, Yaogang; Qin, Yannan; Sun, Shisheng; Li, Zheng |
2012 |
2012-11-01 |
COMM-USE |
N |
PMC3486865 |
23133677.0 |
10.1371/journal.pone.0049224 |
newf1dqx |
0.402822 |
UNKNOWN_1987, Callison_1999 |
Voß_D_2009 |
| 20 |
Wang_2010 |
Molecular simulation study of the binding mechanism of [α-PTi(2)W(10)O(40)](7−) for its promising broad-spectrum inhibitory activity to FluV-A neuraminidase |
Wang, JianPing; Hu, DongHua; Su, ZhongMin |
2010 |
2010-08-14 |
PMC |
N |
PMC7089260 |
|
10.1007/s11434-010-3271-8 |
5wieasp8 |
0.401564 |
Callison_1999, Ivarsson_2012, Smith_2003, Chan_2016, UNKNOWN_1987 |
|
| 21 |
Chen_2012 |
Two Glycosylation Sites in H5N1 Influenza Virus Hemagglutinin That Affect Binding Preference by Computer-Based Analysis |
Chen, Wentian; Sun, Shisheng; Li, Zheng |
2012 |
2012-06-14 |
COMM-USE |
N |
PMC3375263 |
22719948.0 |
10.1371/journal.pone.0038794 |
mfd3do15 |
0.379762 |
Callison_1999, UNKNOWN_1987 |
Xu_Q_2018, Voß_D_2009 |
| 22 |
Gomis-Rüth_2003 |
The Matrix Protein VP40 from Ebola Virus Octamerizes into Pore-like Structures with Specific RNA Binding Properties |
Gomis-Rüth, F.Xavier; Dessen, Andréa; Timmins, Joanna; Bracher, Andreas; Kolesnikowa, Larissa; Becker, Stephan; Klenk, Hans-Dieter; Weissenhorn, Winfried |
2003 |
2003-04-30 |
PMC |
N |
PMC7126486 |
12679020.0 |
10.1016/s0969-2126(03)00050-9 |
eemt5tjs |
0.367770 |
|
|
| 23 |
Rutten_2020 |
Structure-Based Design of Prefusion-Stabilized Filovirus Glycoprotein Trimers |
Rutten, Lucy; Gilman, Morgan S.A.; Blokland, Sven; Juraszek, Jarek; McLellan, Jason S.; Langedijk, Johannes P.M. |
2020 |
2020-03-31 |
None |
N |
PMC7118701 |
32234486.0 |
10.1016/j.celrep.2020.03.025 |
kez0m3ae |
0.348998 |
Gomis-Rüth_2003, Dey_A_2009, UNKNOWN_1987 |
Koellhoffer_2012 |
| 24 |
Wang_2015 |
De novo design of isopeptide bond-tethered triple-stranded coiled coils with exceptional resistance to unfolding and proteolysis: implication for developing antiviral therapeutics |
Wang, Chao; Lai, Wenqing; Yu, Fei; Zhang, Tianhong; Lu, Lu; Jiang, Xifeng; Zhang, Zhenqing; Xu, Xiaoyu; Bai, Yu; Jiang, Shibo; Liu, Keliang |
2015 |
2015-11-01 |
COMM-USE |
N |
PMC6054081 |
30090269.0 |
10.1039/c5sc02220g |
r0ueakuu |
0.346324 |
Gomis-Rüth_2003, Ivarsson_2012 |
Wang_2018 |
| 25 |
Kabanova_2016 |
Platelet-derived growth factor-α receptor is the cellular receptor for human cytomegalovirus gHgLgO trimer |
Kabanova, Anna; Marcandalli, Jessica; Zhou, Tongqing; Bianchi, Siro; Baxa, Ulrich; Tsybovsky, Yaroslav; Lilleri, Daniele; Silacci-Fregni, Chiara; Foglierini, Mathilde; Fernandez-Rodriguez, Blanca Maria; Druz, Aliaksandr; Zhang, Baoshan; Geiger, Roger; Pagani, Massimiliano; Sallusto, Federica; Kwong, Peter D.; Corti, Davide; Lanzavecchia, Antonio; Perez, Laurent |
2016 |
2016-06-06 |
PMC |
N |
PMC4918640 |
27573107.0 |
10.1038/nmicrobiol.2016.82 |
93fwt01n |
0.332355 |
|
|
| 26 |
Jiang_2009 |
The Role of the Charged Residues of the GP2 Helical Regions in Ebola Entry() |
Jiang, Haiqing; Wang, Jizhen; Manicassamy, Balaji; Manicassamy, Santhakumar; Caffrey, Michael; Rong, Lijun |
2009 |
2009-04-23 |
PMC |
N |
PMC3516429 |
23227032.0 |
|
qwzigb15 |
0.323513 |
|
|
| 27 |
Deng_2008 |
A Heterospecific Leucine Zipper Tetramer |
Deng, Yiqun; Liu, Jie; Zheng, Qi; Li, Qunnu; Kallenbach, Neville R.; Lu, Min |
2008 |
2008-09-22 |
PMC |
N |
PMC7111190 |
18804028.0 |
10.1016/j.chembiol.2008.07.008 |
kcbn3h3y |
0.316462 |
Ivarsson_2012, Langosch_2011, Sundaramoorthy_2018, Smith_2003 |
Moulaei_2010, Myllykoski_2017 |
| 28 |
Scrima_2006 |
Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element |
Scrima, Andrea; Wittinghofer, Alfred |
2006 |
2006-06-08 |
PMC |
N |
PMC1500855 |
16763562.0 |
10.1038/sj.emboj.7601171 |
gujr2fno |
0.313631 |
Smith_2003, Ivarsson_2012 |
Myllykoski_2017, Kanitz_2019 |
| 29 |
Tambunan_2014 |
In silico modification of oseltamivir as neuraminidase inhibitor of influenza A virus subtype H1N1 |
Tambunan, Usman Sumo Friend; Rachmania, Rizky Archintya; Parikesit, Arli Aditya |
2014 |
2014-12-12 |
PMC |
N |
PMC4389116 |
25859271.0 |
10.7555/jbr.29.20130024 |
3gz4dyie |
0.312144 |
|
|
| 30 |
Hua_C_2019 |
Characterization by high-resolution crystal structure analysis of a triple-helix region of human collagen type III with potent cell adhesion activity |
Hua, Chen; Zhu, Yun; Xu, Wei; Ye, Sheng; Zhang, Rongguang; Lu, Lu; Jiang, Shibo |
2019 |
2019-01-22 |
PMC |
N |
PMC7092849 |
30545625.0 |
10.1016/j.bbrc.2018.12.018 |
l58f9hix |
0.307102 |
Ivarsson_2012, UNKNOWN_1987, Yang_2012, Gomis-Rüth_2003 |
Kanitz_2019, Ziółkowska_2006 |
| 31 |
Aydin_2013 |
Structural characterization of a fusion glycoprotein from a retrovirus that undergoes a hybrid 2‐step entry mechanism |
Aydin, Halil; Smrke, Brianna M.; Lee, Jeffrey E. |
2013 |
2013-09-13 |
PMC |
N |
PMC7164122 |
24036886.0 |
10.1096/fj.13-232371 |
x8u74fvx |
0.305873 |
Gomis-Rüth_2003, UNKNOWN_1987, Chang_2000 |
|