Topic 03 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 10 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Wang_2009 APOBEC3G cytidine deaminase association with coronavirus nucleocapsid protein Wang, Shui-Mei; Wang, Chin-Tien 2009 2009-05-25 PMC N PMC7103413 19345973.0 10.1016/j.virol.2009.03.010 krcu3hfa 0.952674
2 Kusov_2015 A G-quadruplex-binding macrodomain within the “SARS-unique domain” is essential for the activity of the SARS-coronavirus replication–transcription complex Kusov, Yuri; Tan, Jinzhi; Alvarez, Enrique; Enjuanes, Luis; Hilgenfeld, Rolf 2015 2015-10-31 PMC N PMC4567502 26149721.0 10.1016/j.virol.2015.06.016 7lf2c2ra 0.900170 UNKNOWN_1987, Ivarsson_2012
3 Jourdan_2012 Biophysical characterisation of the nucleocapsid protein from a highly pathogenic porcine reproductive and respiratory syndrome virus strain Jourdan, Stefanie S.; Osorio, Fernando A.; Hiscox, Julian A. 2012 2012-03-09 PMC N PMC7092862 22306009.0 10.1016/j.bbrc.2011.11.126 e0wfn9fz 0.881464
4 Zhang_2007 Nucleocapsid protein of SARS-CoV activates interleukin-6 expression through cellular transcription factor NF-κB Zhang, Xue; Wu, Kailang; Wang, Di; Yue, Xin; Song, Degui; Zhu, Ying; Wu, Jianguo 2007 2007-09-01 PMC N PMC7103332 17490702.0 10.1016/j.virol.2007.04.009 ep6xutcj 0.879802
5 Fielding_2006 Severe acute respiratory syndrome coronavirus protein 7a interacts with hSGT Fielding, Burtram C.; Gunalan, Vithiagaran; Tan, Timothy H.P.; Chou, Chih-Fong; Shen, Shuo; Khan, Sehaam; Lim, Seng Gee; Hong, Wanjin; Tan, Yee-Joo 2006 2006-05-19 PMC N PMC7092935 16580632.0 10.1016/j.bbrc.2006.03.091 aq7amykr 0.858485
6 Chen_2013 Crystal structure-based exploration of the important role of Arg106 in the RNA-binding domain of human coronavirus OC43 nucleocapsid protein Chen, I.-Jung; Yuann, Jeu-Ming P.; Chang, Yu-Ming; Lin, Shing-Yen; Zhao, Jincun; Perlman, Stanley; Shen, Yo-Yu; Huang, Tai-Huang; Hou, Ming-Hon 2013 2013-06-30 None N PMC3774783 23501675.0 10.1016/j.bbapap.2013.03.003 70o0i7ft 0.852214 Masters_1992
7 Tan_Y_2006 Amino acid residues critical for RNA-binding in the N-terminal domain of the nucleocapsid protein are essential determinants for the infectivity of coronavirus in cultured cells Tan, Yong Wah; Fang, Shouguo; Fan, Hui; Lescar, Julien; Liu, D.X. 2006 2006-09-13 NONCOMM N PMC1635287 16971454.0 10.1093/nar/gkl650 at9jg710 0.810491 Masters_1992
8 Wang_2008 Severe acute respiratory syndrome coronavirus nucleocapsid protein confers ability to efficiently produce virus-like particles when substituted for the human immunodeficiency virus nucleocapsid domain Wang, Shui-Mei; Chang, Yu-Fen; Chen, Yi-Ming Arthur; Wang, Chin-Tien 2008 2008-07-01 PMC N PMC7088652 18592403.0 10.1007/s11373-008-9265-8 i267t23m 0.805959 Wang_2009
9 Grossoehme_2009 Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes Grossoehme, Nicholas E.; Li, Lichun; Keane, Sarah C.; Liu, Pinghua; Dann, Charles E.; Leibowitz, Julian L.; Giedroc, David P. 2009 2009-12-04 None N PMC2783395 19782089.0 10.1016/j.jmb.2009.09.040 62vgvjz0 0.803265 Masters_1992
10 Fan_H_2005 The Nucleocapsid Protein of Coronavirus Infectious Bronchitis Virus: Crystal Structure of Its N-Terminal Domain and Multimerization Properties Fan, Hui; Ooi, Amy; Tan, Yong Wah; Wang, Sifang; Fang, Shouguo; Liu, Ding Xiang; Lescar, Julien 2005 2005-12-31 PMC N PMC7126683 16338414.0 10.1016/j.str.2005.08.021 wz8hp6sc 0.798769 Gomis-Rüth_2003 Masters_1992
11 Ospina_2011 Protein oligomerization mediated by the transmembrane carboxyl terminal domain of Bcl-XL Ospina, Angélica; Lagunas-Martínez, Alfredo; Pardo, Julián; Carrodeguas, José A. 2011 2011-10-03 None N PMC7164028 21856303.0 10.1016/j.febslet.2011.08.012 uw9ygfe6 0.787961 Smith_2003, Ivarsson_2012
12 Chang_2008 HIV-1 matrix protein repositioning in nucleocapsid region fails to confer virus-like particle assembly Chang, Ching-Yuan; Chang, Yu-Fen; Wang, Shiu-Mei; Tseng, Ying-Tzu; Huang, Kuo-Jung; Wang, Chin-Tien 2008 2008-08-15 PMC N PMC7103396 18550141.0 10.1016/j.virol.2008.05.010 6cfuzqri 0.786275 UNKNOWN_1987 Masters_1992
13 Chang_2005 Modular organization of SARS coronavirus nucleocapsid protein Chang, Chung-ke; Sue, Shih-Che; Yu, Tsan-hung; Hsieh, Chiu-Min; Tsai, Cheng-Kun; Chiang, Yen-Chieh; Lee, Shin-jye; Hsiao, Hsin-hao; Wu, Wen-Jin; Chang, Wei-Lun; Lin, Chun-Hung; Huang, Tai-huang 2005 2005-10-14 PMC N PMC7089556 16228284.0 10.1007/s11373-005-9035-9 1ujmjjwb 0.784262 Ivarsson_2012 Voß_D_2009
14 Corse_2003 The cytoplasmic tails of infectious bronchitis virus E and M proteins mediate their interaction Corse, Emily; Machamer, Carolyn E 2003 2003-07-20 PMC N PMC7127533 12890618.0 10.1016/s0042-6822(03)00175-2 6tj2k1yn 0.769438 Gomis-Rüth_2003
15 Huang_2009 Elucidation of the stability and functional regions of the human coronavirus OC43 nucleocapsid protein Huang, Chun-Yu; Hsu, Yen-Lan; Chiang, Wan-Ling; Hou, Ming-Hon 2009 2009-11-01 PMC N PMC2788276 19691129.0 10.1002/pro.225 5c0ho2jx 0.769358 UNKNOWN_1987 Chen_2013
16 Zuwała_2015 The Nucleocapsid Protein of Human Coronavirus NL63 Zuwała, Kaja; Golda, Anna; Kabala, Wojciech; Burmistrz, Michał; Zdzalik, Michal; Nowak, Paulina; Kedracka-Krok, Sylwia; Zarebski, Mirosław; Dobrucki, Jerzy; Florek, Dominik; Zeglen, Sławomir; Wojarski, Jacek; Potempa, Jan; Dubin, Grzegorz; Pyrc, Krzysztof 2015 2015-02-20 COMM-USE N PMC4336326 25700263.0 10.1371/journal.pone.0117833 w4d45fue 0.765040 Timani_2005
17 Kuo_L_2016 A key role for the carboxy-terminal tail of the murine coronavirus nucleocapsid protein in coordination of genome packaging Kuo, Lili; Koetzner, Cheri A.; Masters, Paul S. 2016 2016-07-31 PMC N PMC4884538 27105451.0 10.1016/j.virol.2016.04.009 pujlr8uf 0.751413 Masters_1992
18 Chen_2007 Structure of the SARS Coronavirus Nucleocapsid Protein RNA-binding Dimerization Domain Suggests a Mechanism for Helical Packaging of Viral RNA Chen, Chun-Yuan; Chang, Chung-ke; Chang, Yi-Wei; Sue, Shih-Che; Bai, Hsin-I; Riang, Lilianty; Hsiao, Chwan-Deng; Huang, Tai-huang 2007 2007-05-11 PMC N PMC7094638 17379242.0 10.1016/j.jmb.2007.02.069 0p3me0cs 0.739811 Gomis-Rüth_2003, UNKNOWN_1987 Masters_1992
19 Zeng_2008 The nucleocapsid protein of SARS-associated coronavirus inhibits B23 phosphorylation Zeng, Yingchun; Ye, Linbai; Zhu, Shengli; Zheng, Hong; Zhao, Peng; Cai, Weijia; Su, Liya; She, Yinglong; Wu, Zhenghui 2008 2008-05-02 PMC N PMC7092856 18243139.0 10.1016/j.bbrc.2008.01.096 cwt7dswz 0.736550
20 Stodola_2018 The OC43 human coronavirus envelope protein is critical for infectious virus production and propagation in neuronal cells and is a determinant of neurovirulence and CNS pathology Stodola, Jenny K.; Dubois, Guillaume; Le Coupanec, Alain; Desforges, Marc; Talbot, Pierre J. 2018 2018-02-28 PMC N PMC7118982 29287230.0 10.1016/j.virol.2017.12.023 vq5fy8m5 0.701870
21 Luo_H_2006 Severe acute respiratory syndrome coronavirus membrane protein interacts with nucleocapsid protein mostly through their carboxyl termini by electrostatic attraction Luo, Haibin; Wu, Dalei; Shen, Can; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2006 2006-12-31 PMC N PMC7108423 16343974.0 10.1016/j.biocel.2005.10.022 o2tbqf4e 0.692108 Ivarsson_2012, UNKNOWN_1987, Gomis-Rüth_2003, Chang_2000 Voß_D_2009, Chen_2009
22 Li_F_2005 Sumoylation of the nucleocapsid protein of severe acute respiratory syndrome coronavirus Li, Frank Qisheng; Xiao, Han; Tam, James P.; Liu, D.X. 2005 2005-04-25 PMC N PMC7094623 15848177.0 10.1016/j.febslet.2005.03.039 f6mlvl56 0.692006 Voß_D_2009
23 Lo_Y_2013 Oligomerization of the carboxyl terminal domain of the human coronavirus 229E nucleocapsid protein Lo, Yu-Sheng; Lin, Shing-Yen; Wang, Shiu-Mei; Wang, Chin-Tien; Chiu, Ya-Li; Huang, Tai-Huang; Hou, Ming-Hon 2013 2013-01-16 PMC N PMC7089611 23178926.0 10.1016/j.febslet.2012.11.016 vbrzmnoh 0.685783 Smith_2003, UNKNOWN_1987, Ivarsson_2012, Chang_2000 Voß_D_2009
24 Kumar_2013 Elucidating the Interacting Domains of Chandipura Virus Nucleocapsid Protein Kumar, Kapila; Rajasekharan, Sreejith; Gulati, Sahil; Rana, Jyoti; Gabrani, Reema; Jain, Chakresh K.; Gupta, Amita; Chaudhary, Vijay K.; Gupta, Sanjay 2013 2013-10-28 COMM-USE N PMC3830837 24288532.0 10.1155/2013/594319 gxp4sqq0 0.685551 UNKNOWN_1987
25 Strandin_2011 The cytoplasmic tail of hantavirus Gn glycoprotein interacts with RNA Strandin, Tomas; Hepojoki, Jussi; Wang, Hao; Vaheri, Antti; Lankinen, Hilkka 2011 2011-09-15 PMC N 21807393.0 10.1016/j.virol.2011.06.030 au7s3dmp 0.678975
26 Spencer_2006 Characterisation of the RNA binding properties of the coronavirus infectious bronchitis virus nucleocapsid protein amino-terminal region Spencer, Kelly-Anne; Hiscox, Julian A. 2006 2006-10-30 PMC N PMC7094245 17052713.0 10.1016/j.febslet.2006.09.052 50gce6f1 0.674314 Masters_1992, Zhou_2000
27 Chang_2014 The SARS coronavirus nucleocapsid protein – Forms and functions Chang, Chung-ke; Hou, Ming-Hon; Chang, Chi-Fon; Hsiao, Chwan-Deng; Huang, Tai-huang 2014 2014-03-31 PMC N PMC7113676 24418573.0 10.1016/j.antiviral.2013.12.009 6fue84x6 0.673805 Chang_2005
28 Liang_2019 N-Linked glycosylation of the membrane protein ectodomain regulates infectious bronchitis virus-induced ER stress response, apoptosis and pathogenesis Liang, Jia Qi; Fang, Shouguo; Yuan, Quan; Huang, Mei; Chen, Rui Ai; Fung, To Sing; Liu, Ding Xiang 2019 2019-05-31 PMC N PMC7112112 30852271.0 10.1016/j.virol.2019.02.017 yyh5isxj 0.669085 Voß_D_2009
29 Tseng_2013 Identifying SARS-CoV Membrane Protein Amino Acid Residues Linked to Virus-Like Particle Assembly Tseng, Ying-Tzu; Chang, Chia-Hui; Wang, Shiu-Mei; Huang, Kuo-Jung; Wang, Chin-Tien 2013 2013-05-20 COMM-USE N PMC3659117 23700447.0 10.1371/journal.pone.0064013 951xny9u 0.659509 Yang_2012, UNKNOWN_1987, Chang_2000 Voß_D_2009, Chen_2009
30 Johnson_2010 SARS Coronavirus Unique Domain: Three-Domain Molecular Architecture in Solution and RNA Binding Johnson, Margaret A.; Chatterjee, Amarnath; Neuman, Benjamin W.; Wüthrich, Kurt 2010 2010-07-23 None N PMC2958096 20493876.0 10.1016/j.jmb.2010.05.027 5ms5e3rp 0.657960 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Yang_2012 Voß_D_2009, Tsai_2010, Guillén_2009
31 Chang_2013 Transient Oligomerization of the SARS-CoV N Protein – Implication for Virus Ribonucleoprotein Packaging Chang, Chung-ke; Chen, Chia-Min Michael; Chiang, Ming-hui; Hsu, Yen-lan; Huang, Tai-huang 2013 2013-05-23 COMM-USE N PMC3662775 23717688.0 10.1371/journal.pone.0065045 vf9n2vf9 0.654369 Ivarsson_2012, Smith_2003, Gomis-Rüth_2003, UNKNOWN_1987 Voß_D_2009
32 Dinesh_2020 Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein Dhurvas Chandrasekaran Dinesh; Dominika Chalupska; Jan Silhan; Vaclav Veverka; Evzen Boura 2020 2020-04-05 BioRxiv Y 10.1101/2020.04.02.022194 ezpjdz55 0.649710
33 Kuo_S_2013 Evolution of infectious bronchitis virus in Taiwan: Positively selected sites in the nucleocapsid protein and their effects on RNA-binding activity Kuo, Shu-Ming; Kao, Hsiao-Wei; Hou, Ming-Hon; Wang, Ching-Ho; Lin, Siou-Hong; Su, Hong-Lin 2013 2013-03-23 PMC N PMC7117379 23159091.0 10.1016/j.vetmic.2012.10.020 5h3l6nh6 0.649710
34 Yao_Q_2013 Negatively charged residues in the endodomain are critical for specific assembly of spike protein into murine coronavirus Yao, Qianqian; Masters, Paul S.; Ye, Rong 2013 2013-07-20 PMC N PMC3772176 23628137.0 10.1016/j.virol.2013.04.001 67bbmo4m 0.648546 Gomis-Rüth_2003 Voß_D_2009
35 Lin_S_2014 Structural Basis for the Identification of the N-Terminal Domain of Coronavirus Nucleocapsid Protein as an Antiviral Target Lin, Shing-Yen; Liu, Chia-Ling; Chang, Yu-Ming; Zhao, Jincun; Perlman, Stanley; Hou, Ming-Hon 2014 2014-02-24 PMC N PMC3983370 24564608.0 10.1021/jm500089r zehltghv 0.648325
36 Ponnusamy_2008 Variable Oligomerization Modes in Coronavirus Non-structural Protein 9 Ponnusamy, Rajesh; Moll, Ralf; Weimar, Thomas; Mesters, Jeroen R.; Hilgenfeld, Rolf 2008 2008-11-28 PMC N PMC7094590 18694760.0 10.1016/j.jmb.2008.07.071 5kh7wgvx 0.634241 Gomis-Rüth_2003 Voß_D_2009
37 Liu_C_2016 Using mutagenesis to explore conserved residues in the RNA-binding groove of influenza A virus nucleoprotein for antiviral drug development Liu, Chia-Lin; Hung, Hui-Chen; Lo, Shou-Chen; Chiang, Ching-Hui; Chen, I-Jung; Hsu, John T.-A.; Hou, Ming-Hon 2016 2016-02-26 COMM-USE N PMC4768256 26916998.0 10.1038/srep21662 4wjvykx7 0.629548 Masters_1992
38 Hammond_2017 SARS‐unique fold in the Rousettus bat coronavirus HKU9 Hammond, Robert G.; Tan, Xuan; Johnson, Margaret A. 2017 2017-06-15 PMC N PMC5563143 28580734.0 10.1002/pro.3208 u4w5q0ar 0.626640
39 Dokland_2010 The structural biology of PRRSV Dokland, Terje 2010 2010-12-31 PMC N PMC7114433 20692304.0 10.1016/j.virusres.2010.07.029 sbuvw7a1 0.599370
40 Nakauchi_2008 Analysis of severe acute respiratory syndrome coronavirus structural proteins in virus‐like particle assembly Nakauchi, Mina; Kariwa, Hiroaki; Kon, Yasuhiro; Yoshii, Kentaro; Maeda, Akihiko; Takashima, Ikuo 2008 2008-12-03 PMC N PMC7168385 19120977.0 10.1111/j.1348-0421.2008.00079.x 1z65wl6m 0.590576
41 Chen_2005 Function of HAb18G/CD147 in Invasion of Host Cells by Severe Acute Respiratory Syndrome Coronavirus Chen, Zhinan; Mi, Li; Xu, Jing; Yu, Jiyun; Wang, Xianhui; Jiang, Jianli; Xing, Jinliang; Shang, Peng; Qian, Airong; Li, Yu; Shaw, Peter X.; Wang, Jianwei; Duan, Shumin; Ding, Jin; Fan, Chunmei; Zhang, Yang; Yang, Yong; Yu, Xiaoling; Feng, Qiang; Li, Biehu; Yao, Xiying; Zhang, Zheng; Li, Ling; Xue, Xiaoping; Zhu, Ping 2005 2005-03-01 PMC N PMC7110046 15688292.0 10.1086/427811 uy2dlamj 0.589821
42 Ma_Y_2010 Structures of the N- and C-terminal domains of MHV-A59 nucleocapsid protein corroborate a conserved RNA-protein binding mechanism in coronavirus Ma, Yanlin; Tong, Xiaohang; Xu, Xiaoling; Li, Xuemei; Lou, Zhiyong; Rao, Zihe 2010 2010-07-01 PMC N PMC4875274 21203940.0 10.1007/s13238-010-0079-x oqusfhei 0.568762 Gomis-Rüth_2003 Chen_2013
43 He_R_2004 Characterization of protein–protein interactions between the nucleocapsid protein and membrane protein of the SARS coronavirus He, Runtao; Leeson, Andrew; Ballantine, Melissa; Andonov, Anton; Baker, Lindsay; Dobie, Frederick; Li, Yan; Bastien, Nathalie; Feldmann, Heinz; Strocher, Ute; Theriault, Steven; Cutts, Todd; Cao, Jingxin; Booth, Timothy F.; Plummer, Frank A.; Tyler, Shaun; Li, Xuguang 2004 2004-10-31 PMC N PMC7127797 15351485.0 10.1016/j.virusres.2004.05.002 76ia62hl 0.568611 Voß_D_2009
44 Hsieh_2008 Interactions between M protein and other structural proteins of severe, acute respiratory syndrome-associated coronavirus Hsieh, Yi-Ching; Li, Hui-Chun; Chen, Shih-Chi; Lo, Shih-Yen 2008 2008-09-16 PMC N PMC7089546 18792806.0 10.1007/s11373-008-9278-3 qicchvhf 0.559849 Álvarez_2010 Chen_2009, Voß_D_2009, Álvarez_2010
45 Chan_2016 Long-range communication between different functional sites in the picornaviral 3C protein Chan, Yan M.; Moustafa, Ibrahim M.; Arnold, Jamie J.; Cameron, Craig E.; Boehr, David D. 2016 2016-04-01 PMC N PMC4824962 27050688.0 10.1016/j.str.2016.02.019 4ef635rc 0.559426 Shengjuler_2017, Myllykoski_2017
46 Zhou_2000 The amino and carboxyl domains of the infectious bronchitis virus nucleocapsid protein interact with 3′ genomic RNA Zhou, Minglong; Collisson, Ellen W 2000 2000-03-31 PMC N PMC7125745 10773316.0 10.1016/s0168-1702(00)00126-x 5q4vt1sl 0.559388 UNKNOWN_1987 Masters_1992
47 Tan_F_2011 Identification of non-essential regions in nucleocapsid protein of porcine reproductive and respiratory syndrome virus for replication in cell culture Tan, Feifei; Wei, Zuzhang; Li, Yanhua; Zhang, Rong; Zhuang, Jinshan; Sun, Zhi; Yuan, Shishan 2011 2011-06-30 PMC N PMC7114398 21440019.0 10.1016/j.virusres.2011.03.011 lopcb77c 0.556915 UNKNOWN_1987
48 Fan_Z_2006 SARS‐CoV nucleocapsid protein binds to hUbc9, a ubiquitin conjugating enzyme of the sumoylation system Fan, Zheng; Zhuo, Yue; Tan, Xinyu; Zhou, Zhi; Yuan, Jiangang; Qiang, Boqin; Yan, Jinghua; Peng, Xiaozhong; Gao, George F. 2006 2006-09-22 PMC N PMC7167196 16998888.0 10.1002/jmv.20707 0zvtiai8 0.544296 UNKNOWN_1987
49 Shengjuler_2017 The RNA-Binding Site of Poliovirus 3C Protein Doubles as a Phosphoinositide-Binding Domain Shengjuler, Djoshkun; Chan, Yan Mei; Sun, Simou; Moustafa, Ibrahim M.; Li, Zhen-Lu; Gohara, David W.; Buck, Matthias; Cremer, Paul S.; Boehr, David D.; Cameron, Craig E. 2017 2017-12-05 None N PMC5728361 29211985.0 10.1016/j.str.2017.11.001 qgzgzjhr 0.542372 Ivarsson_2012, Chan_2016 Masters_1992
50 Lo_M_2014 Evolution and Structural Organization of the C Proteins of Paramyxovirinae Lo, Michael K.; Søgaard, Teit Max; Karlin, David G. 2014 2014-02-25 COMM-USE N PMC3934983 24587180.0 10.1371/journal.pone.0090003 vnafx1ng 0.535853 UNKNOWN_1987, Callison_1999
51 Chow_2005 Adenovirus-mediated expression of the C-terminal domain of SARS-CoV spike protein is sufficient to induce apoptosis in Vero E6 cells Chow, Ken Y.C.; Yeung, Yin Shan; Hon, Chung Chau; Zeng, Fanya; Law, Ka Man; Leung, Frederick C.C. 2005 2005-12-19 PMC N PMC7094440 16310778.0 10.1016/j.febslet.2005.10.065 l2ixbhyb 0.532703 Liu_M_2006, Chen_2009
52 Surjit_2004 The nucleocapsid protein of the SARS coronavirus is capable of self-association through a C-terminal 209 amino acid interaction domain Surjit, Milan; Liu, Boping; Kumar, Purnima; Chow, Vincent T.K; Lal, Sunil K 2004 2004-05-14 PMC Y PMC7111157 15094372.0 10.1016/j.bbrc.2004.03.154 gcgc9g9x 0.529496
53 Tseng_2010 Self-assembly of Severe Acute Respiratory Syndrome Coronavirus Membrane Protein Tseng, Ying-Tzu; Wang, Shiu-Mei; Huang, Kuo-Jung; Lee, Amber I-Ru; Chiang, Chien-Cheng; Wang, Chin-Tien 2010 2010-02-12 PMC N PMC2857088 20154085.0 10.1074/jbc.m109.030270 bjdkod56 0.523097 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993 Voß_D_2009, Chen_2009
54 Álvarez_2010 The envelope protein of severe acute respiratory syndrome coronavirus interacts with the non-structural protein 3 and is ubiquitinated Álvarez, Enrique; DeDiego, Marta L.; Nieto-Torres, Jose L.; Jiménez-Guardeño, Jose M.; Marcos-Villar, Laura; Enjuanes, Luis 2010 2010-07-05 PMC N PMC7119183 20409569.0 10.1016/j.virol.2010.03.015 uwwabdqb 0.519975 Chen_2009
55 Chen_2010 Crystallization and preliminary X-ray diffraction analysis of the N-terminal domain of human coronavirus OC43 nucleocapsid protein Chen, I-Jung; Chou, Chia-Cheng; Liu, Chia-Ling; Lee, Cheng-Chung; Kan, Lou-Sing; Hou, Ming-Hon 2010 2010-06-24 PMC N PMC2898469 20606281.0 10.1107/s1744309110017616 et3mjp72 0.499605 Callison_1999, UNKNOWN_1987 Chen_2013
56 Chang_2005 The dimer interface of the SARS coronavirus nucleocapsid protein adapts a porcine respiratory and reproductive syndrome virus-like structure Chang, Chung-ke; Sue, Shih-Che; Yu, Tsan-hung; Hsieh, Chiu-Min; Tsai, Cheng-Kun; Chiang, Yen-Chieh; Lee, Shin-jye; Hsiao, Hsin-hao; Wu, Wen-Jin; Chang, Chi-Fon; Huang, Tai-huang 2005 2005-10-24 PMC N PMC7094587 16214138.0 10.1016/j.febslet.2005.09.038 zv8lm4jf 0.492061 Gomis-Rüth_2003, Wang_2014, Ivarsson_2012 Guillén_2009
57 You_J_2007 Trafficking motifs in the SARS-coronavirus nucleocapsid protein You, Jae-Hwan; Reed, Mark L.; Hiscox, Julian A. 2007 2007-07-13 PMC N PMC7092899 17524366.0 10.1016/j.bbrc.2007.05.036 cea11cyx 0.491818 UNKNOWN_1993, UNKNOWN_1987 Timani_2005
58 Qiu_M_2005 Use of the COOH Portion of the Nucleocapsid Protein in an Antigen-Capturing Enzyme-Linked Immunosorbent Assay for Specific and Sensitive Detection of Severe Acute Respiratory Syndrome Coronavirus Qiu, Maofeng; Wang, Jin; Wang, Hongxia; Chen, Zeliang; Dai, Erhei; Guo, Zhaobiao; Wang, Xiaoyi; Pang, Xin; Fan, Baoxing; Wen, Jie; Wang, Jian; Yang, Ruifu 2005 2005-03-01 None N PMC1065208 15753261.0 10.1128/cdli.12.3.474-476.2005 xynnw3by 0.487669
59 Masters_1992 Localization of an RNA-binding domain in the nucleocapsid protein of the coronavirus mouse hepatitis virus Masters, P. S. 1992 1992-01-01 PMC N PMC7086615 1322650.0 10.1007/bf01309634 kyavg4vu 0.484238
60 Takeda_2008 Solution Structure of the C-terminal Dimerization Domain of SARS Coronavirus Nucleocapsid Protein Solved by the SAIL-NMR Method Takeda, Mitsuhiro; Chang, Chung-ke; Ikeya, Teppei; Güntert, Peter; Chang, Yuan-hsiang; Hsu, Yen-lan; Huang, Tai-huang; Kainosho, Masatsune 2008 2008-07-18 PMC N PMC7094413 18561946.0 10.1016/j.jmb.2007.11.093 sxflrz22 0.481077 Ivarsson_2012, UNKNOWN_1987, UNKNOWN_1993, Gomis-Rüth_2003, Smith_2003 Voß_D_2009, Guillén_2009, Johnson_2010
61 Luo_H_2005 The nucleocapsid protein of SARS coronavirus has a high binding affinity to the human cellular heterogeneous nuclear ribonucleoprotein A1 Luo, Haibin; Chen, Qing; Chen, Jing; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2005 2005-05-09 PMC N PMC7094256 15862300.0 10.1016/j.febslet.2005.03.080 cxv3m4u1 0.479026 Masters_1992
62 Liu_M_2006 Amino acids 1 to 422 of the spike protein of SARS associated coronavirus are required for induction of cyclooxygenase-2 Liu, Mo; Gu, Chunfang; Wu, Jianguo; Zhu, Ying 2006 2006-01-01 PMC N PMC7088811 16991002.0 10.1007/s11262-005-0070-4 2d7l26tl 0.476318
63 Xie_M_2009 A phage RNA-binding protein binds to a non-cognate structured RNA and stabilizes its core structure Xie, Mao-Hua; Wu, Qi-Jia; Jiang, Yan-Fei; Bao, Penghui; Zhang, Yi 2009 2009-01-09 PMC N PMC7117394 19000653.0 10.1016/j.bbrc.2008.10.160 job4854r 0.454316 Hou_L_2014 Masters_1992
64 Robertson_2004 The Structure of a Rigorously Conserved RNA Element within the SARS Virus Genome Robertson, Michael P; Igel, Haller; Baertsch, Robert; Haussler, David; Ares, Manuel; Scott, William G 2004 2004-12-28 COMM-USE N PMC539059 15630477.0 10.1371/journal.pbio.0030005 p7um7o87 0.443744
65 Choudhury_2017 RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination Nila Roy Choudhury; Gregory Heikel; Maryia Trubitsyna; Peter Kubik; Jakub Stanislaw Nowak; Shaun Webb; Sander Granneman; Christos Spanos; Juri Rappsilber; Alfredo Castello; Gracjan Michlewski 2017 2017-10-09 BioRxiv N 10.1101/200410 ifla4aix 0.438880
66 Voß_D_2009 Studies on membrane topology, N-glycosylation and functionality of SARS-CoV membrane protein Voß, Daniel; Pfefferle, Susanne; Drosten, Christian; Stevermann, Lea; Traggiai, Elisabetta; Lanzavecchia, Antonio; Becker, Stephan 2009 2009-06-18 COMM-USE N PMC2705359 19534833.0 10.1186/1743-422x-6-79 jljpb7rv 0.425862 UNKNOWN_1987, Chang_2000, Gomis-Rüth_2003, UNKNOWN_1993 Chen_2009
67 Cao_S_2005 Yeast expression and characterization of SARS-CoV N protein Cao, Shishu; Wang, Haihe; Luhur, Arthur; Wong, Sek-Man 2005 2005-12-31 PMC N PMC7112830 16026862.0 10.1016/j.jviromet.2005.06.010 rmomnmjy 0.425211 Chen_2009
68 Yang_2012 Replication of murine coronavirus requires multiple cysteines in the endodomain of spike protein Yang, Jinhua; Lv, Jun; Wang, Yuyan; Gao, Shuang; Yao, Qianqian; Qu, Di; Ye, Rong 2012 2012-06-05 PMC N PMC7111998 22424735.0 10.1016/j.virol.2012.02.015 yylu7jpf 0.417541 UNKNOWN_1987, Chang_2000, UNKNOWN_1993 Chang_2000, Voß_D_2009, UNKNOWN_1987
69 Neuman_2011 A structural analysis of M protein in coronavirus assembly and morphology Neuman, Benjamin W.; Kiss, Gabriella; Kunding, Andreas H.; Bhella, David; Baksh, M. Fazil; Connelly, Stephen; Droese, Ben; Klaus, Joseph P.; Makino, Shinji; Sawicki, Stanley G.; Siddell, Stuart G.; Stamou, Dimitrios G.; Wilson, Ian A.; Kuhn, Peter; Buchmeier, Michael J. 2011 2011-04-30 None N PMC4486061 21130884.0 10.1016/j.jsb.2010.11.021 1eg1vf8b 0.416631 Gomis-Rüth_2003 Voß_D_2009
70 Sutton_2004 The nsp9 Replicase Protein of SARS-Coronavirus, Structure and Functional Insights Sutton, Geoff; Fry, Elizabeth; Carter, Lester; Sainsbury, Sarah; Walter, Tom; Nettleship, Joanne; Berrow, Nick; Owens, Ray; Gilbert, Robert; Davidson, Andrew; Siddell, Stuart; Poon, Leo L.M.; Diprose, Jonathan; Alderton, David; Walsh, Martin; Grimes, Jonathan M.; Stuart, David I. 2004 2004-02-29 PMC N PMC7135010 14962394.0 10.1016/j.str.2004.01.016 ihwwfnbn 0.413305 UNKNOWN_1987
71 Doan_2003 Structure of the Nucleocapsid Protein of Porcine Reproductive and Respiratory Syndrome Virus Doan, Danny N.P; Dokland, Terje 2003 2003-11-30 PMC N 14604534.0 10.1016/j.str.2003.09.018 t6r6adx3 0.412353 Gomis-Rüth_2003
72 Teterina_2006 Testing the modularity of the N-terminal amphipathic helix conserved in picornavirus 2C proteins and hepatitis C NS5A protein Teterina, Natalya L.; Gorbalenya, Alexander E.; Egger, Denise; Bienz, Kurt; Rinaudo, Mario S.; Ehrenfeld, Ellie 2006 2006-01-20 PMC N PMC7111807 16226781.0 10.1016/j.virol.2005.08.044 00a19z5i 0.411753
73 Zhang_2011 Identification of a linear epitope on the capsid protein of classical swine fever virus Zhang, Xin; Xu, Jia; Sun, Yuan; Li, Su; Li, Na; Yang, Shuo; He, Fan; Huang, Jun-Hua; Ling, Li-Jun; Qiu, Hua-Ji 2011 2011-03-31 PMC N PMC7114404 21255622.0 10.1016/j.virusres.2011.01.009 7ilutd8n 0.400036
74 Yuan_2006 Biochemical evidence for the presence of mixed membrane topologies of the severe acute respiratory syndrome coronavirus envelope protein expressed in mammalian cells Yuan, Q.; Liao, Y.; Torres, J.; Tam, J.P.; Liu, D.X. 2006 2006-05-29 PMC N PMC7094218 16684538.0 10.1016/j.febslet.2006.04.076 v3lbrzh8 0.396434 UNKNOWN_1987, Maeda_2001, UNKNOWN_1993, UNKNOWN_1993 Voß_D_2009, Chen_2009
75 Soowannayan_2011 RNA-Binding Domain in the Nucleocapsid Protein of Gill-Associated Nidovirus of Penaeid Shrimp Soowannayan, Chumporn; Cowley, Jeff A.; Michalski, Wojtek P.; Walker, Peter J. 2011 2011-08-03 COMM-USE N PMC3153931 21857914.0 10.1371/journal.pone.0022156 4nhy35xn 0.395238 Masters_1992
76 Yuan_2005 Subcellular localization and membrane association of SARS-CoV 3a protein Yuan, Xiaoling; Li, Jianyong; Shan, Yajun; Yang, Zhen; Zhao, Zhenhu; Chen, Bo; Yao, Zhenyu; Dong, Bo; Wang, Shengqi; Chen, Jiapei; Cong, Yuwen 2005 2005-05-31 PMC N PMC7114198 15763150.0 10.1016/j.virusres.2005.01.001 g955zcm6 0.390966 UNKNOWN_1987, UNKNOWN_1993 Voß_D_2009, Chen_2009
77 Navratil_2020 The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) envelope (E) protein harbors a conserved BH3-like motif Vincent Navratil; Loïc Lionnard; Sonia Longhi; Christophe Combet; Abdel Aouacheria 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.09.033522 wolpnbxa 0.388217
78 Madu_2009 SARS-coronavirus spike S2 domain flanked by cysteine residues C822 and C833 is important for activation of membrane fusion Madu, Ikenna G.; Belouzard, Sandrine; Whittaker, Gary R. 2009 2009-10-25 PMC N PMC3594805 19717178.0 10.1016/j.virol.2009.07.038 i4e5jq7a 0.383263 UNKNOWN_1987, Chang_2000 Guillén_2009
79 Hung_2015 Amino Terminal Region of Dengue Virus NS4A Cytosolic Domain Binds to Highly Curved Liposomes Hung, Yu-Fu; Schwarten, Melanie; Hoffmann, Silke; Willbold, Dieter; Sklan, Ella H.; Koenig, Bernd W. 2015 2015-07-21 COMM-USE N PMC4517141 26197333.0 10.3390/v7072812 3uwiys4a 0.381545 Gomis-Rüth_2003 Voß_D_2009
80 Liu_W_2018 A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase Liu, Weichi; Shi, Xiaoling; Gong, Peng 2018 2018-11-16 COMM-USE N PMC6237809 30239956.0 10.1093/nar/gky848 ya0siivm 0.381032
81 Bussmann_2006 Antigenic and cellular localisation analysis of the severe acute respiratory syndrome coronavirus nucleocapsid protein using monoclonal antibodies Bussmann, Bianca M.; Reiche, Sven; Jacob, Lotta H.; Braun, Jan Matthias; Jassoy, Christian 2006 2006-12-31 PMC N PMC7114340 16920216.0 10.1016/j.virusres.2006.07.005 nw5l1nen 0.378949 UNKNOWN_1987, UNKNOWN_1993, Maeda_2001
82 Gomis-Rüth_2003 The Matrix Protein VP40 from Ebola Virus Octamerizes into Pore-like Structures with Specific RNA Binding Properties Gomis-Rüth, F.Xavier; Dessen, Andréa; Timmins, Joanna; Bracher, Andreas; Kolesnikowa, Larissa; Becker, Stephan; Klenk, Hans-Dieter; Weissenhorn, Winfried 2003 2003-04-30 PMC N PMC7126486 12679020.0 10.1016/s0969-2126(03)00050-9 eemt5tjs 0.369220
83 Kwon_2018 Nucleic Acid-Dependent Structural Transition of the Intrinsically Disordered N-Terminal Appended Domain of Human Lysyl-tRNA Synthetase Kwon, Soon Bin; Yu, Ji Eun; Park, Chan; Lee, Jiseop; Seong, Baik L. 2018 2018-10-03 COMM-USE N PMC6213541 30282926.0 10.3390/ijms19103016 89u7de3i 0.368065 Hou_L_2014, Ivarsson_2012 Masters_1992, Faaberg_1996
84 Mavrakis_2004 Structure and Function of the C-terminal Domain of the Polymerase Cofactor of Rabies Virus Mavrakis, Manos; McCarthy, Andrew A.; Roche, Stéphane; Blondel, Danielle; Ruigrok, Rob W.H. 2004 2004-10-29 PMC N 15476803.0 10.1016/j.jmb.2004.08.071 0ia91j2b 0.357337 Gomis-Rüth_2003
85 ZHOU_2008 A cysteine-rich metal-binding domain from rubella virus non-structural protein is essential for viral protease activity and virus replication ZHOU, Yubin; TZENG, Wen-Pin; YE, Yiming; HUANG, Yun; LI, Shunyi; CHEN, Yanyi; FREY, Teryl K.; YANG, Jenny J. 2008 2008-12-23 PMC N PMC2908387 18795894.0 10.1042/bj20081468 z7z7sf7b 0.354002
86 Timani_2005 Nuclear/nucleolar localization properties of C-terminal nucleocapsid protein of SARS coronavirus Timani, Khalid Amine; Liao, Qingjiao; Ye, Linbai; Zeng, Yingchun; Liu, Jing; Zheng, Yi; Ye, Li; Yang, Xiaojun; Lingbao, Kong; Gao, Jingrong; Zhu, Ying 2005 2005-12-31 PMC Y PMC7114095 15992957.0 10.1016/j.virusres.2005.05.007 g5vcbn0n 0.341279 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1993
87 Chen_2008 Residues on the Dimer Interface of SARS Coronavirus 3C-like Protease: Dimer Stability Characterization and Enzyme Catalytic Activity Analysis Chen, Shuai; Zhang, Jian; Hu, Tiancen; Chen, Kaixian; Jiang, Hualiang; Shen, Xu 2008 2008-01-07 PMC N PMC7109808 18182387.0 10.1093/jb/mvm246 m6iocvo7 0.338787 Smith_2003, Ivarsson_2012, Yang_2012, UNKNOWN_1987, Chan_2016 Kanitz_2019
88 Luo_C_2004 Nucleocapsid protein of SARS coronavirus tightly binds to human cyclophilin A Luo, Cheng; Luo, Haibin; Zheng, Suxin; Gui, Chunshan; Yue, Liduo; Yu, Changying; Sun, Tao; He, Peilan; Chen, Jing; Shen, Jianhua; Luo, Xiaomin; Li, Yixue; Liu, Hong; Bai, Donglu; Shen, Jingkang; Yang, Yiming; Li, Fangqiu; Zuo, Jianping; Hilgenfeld, Rolf; Pei, Gang; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2004 2004-08-27 PMC N PMC7092810 15358143.0 10.1016/j.bbrc.2004.07.003 st8k0yym 0.333536 Ivarsson_2012, Chan_2016
89 Ruch_2012 A Single Polar Residue and Distinct Membrane Topologies Impact the Function of the Infectious Bronchitis Coronavirus E Protein Ruch, Travis R.; Machamer, Carolyn E. 2012 2012-05-03 COMM-USE N PMC3343006 22570613.0 10.1371/journal.ppat.1002674 tro7b4d0 0.315992 UNKNOWN_1987, Gomis-Rüth_2003 Voß_D_2009
90 Fu_J_2020 Identification of a Novel Linear B-Cell Epitope on the Nucleocapsid Protein of Porcine Deltacoronavirus Fu, Jiayu; Chen, Rui; Hu, Jingfei; Qu, Huan; Zhao, Yujia; Cao, Sanjie; Wen, Xintian; Wen, Yiping; Wu, Rui; Zhao, Qin; Ma, Xiaoping; Huang, Xiaobo 2020 2020-01-19 COMM-USE N PMC7013544 31963776.0 10.3390/ijms21020648 2r101v54 0.311923 Callison_1999, UNKNOWN_1987
91 Kang_2020 Crystal structure of SARS-CoV-2 nucleocapsid protein RNA binding domain reveals potential unique drug targeting sites Sisi Kang; Mei Yang; Zhongsi Hong; Liping Zhang; Zhaoxia Huang; Xiaoxue Chen; Suhua He; Ziliang Zhou; Zhechong Zhou; Qiuyue Chen; Yan Yan; Changsheng Zhang; Hong Shan; Shoudeng Chen 2020 2020-03-07 BioRxiv Y 10.1101/2020.03.06.977876 r88hpbxp 0.310061
92 Hatakeyama_2008 Dissection and identification of regions required to form pseudoparticles by the interaction between the nucleocapsid (N) and membrane (M) proteins of SARS coronavirus Hatakeyama, Seisuke; Matsuoka, Yusuke; Ueshiba, Hidehiro; Komatsu, Nobukazu; Itoh, Kyogo; Shichijo, Shigeki; Kanai, Takao; Fukushi, Masaya; Ishida, Isao; Kirikae, Teruo; Sasazuki, Takehiko; Miyoshi-Akiyama, Tohru 2008 2008-10-10 PMC N PMC7103410 18703211.0 10.1016/j.virol.2008.07.012 qbz4furm 0.309101 UNKNOWN_1987, Yang_2012 Timani_2005, Voß_D_2009
93 Basu_2016 A structural perspective of RNA recognition by intrinsically disordered proteins Basu, Sushmita; Bahadur, Ranjit Prasad 2016 2016-05-26 PMC N PMC7079799 27229125.0 10.1007/s00018-016-2283-1 qk27wgmd 0.308054 Ivarsson_2012
94 Chatterjee_2007 NMR assignment of the domain 513–651 from the SARS-CoV nonstructural protein nsp3 Chatterjee, Amarnath; Johnson, Margaret A.; Serrano, Pedro; Pedrini, Bill; Wüthrich, Kurt 2007 2007-10-30 PMC N PMC7090708 19636862.0 10.1007/s12104-007-9052-x e36om23p 0.306615 Gomis-Rüth_2003 Serrano_2008
95 Dubois_2012 Astrovirus Structure and Assembly Dubois, Rebecca M.; Dryden, Kelly A.; Yeager, Mark; Tao, Yizhi J. 2012 2012-09-07 PMC N PMC7120587 10.1007/978-1-4614-4735-1_3 czrecnn6 0.303921 Effantin_2016, Walls_2016