Topic 01 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 45 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Verhagen_2013 Respiratory infections in Eñepa Amerindians are related to malnutrition and Streptococcus pneumoniae carriage Verhagen, Lilly M.; Gómez-Castellano, Keyla; Snelders, Eveline; Rivera-Olivero, Ismar; Pocaterra, Leonor; Melchers, Willem J.G.; de Waard, Jacobus H.; Hermans, Peter W.M. 2013 2013-10-31 PMC N 10.1016/j.jinf.2013.06.010 8ubm0kig 0.903649 Howie_2014, Hoang_2019
2 Ieven_2018 Aetiology of lower respiratory tract infection in adults in primary care: a prospective study in 11 European countries Ieven, M.; Coenen, S.; Loens, K.; Lammens, C.; Coenjaerts, F.; Vanderstraeten, A.; Henriques-Normark, B.; Crook, D.; Huygen, K.; Butler, C.C.; Verheij, T.J.M.; Little, P.; Zlateva, K.; van Loon, A.; Claas, E.C.J.; Goossens, H. 2018 2018-11-30 PMC N PMC7129248 29447989.0 10.1016/j.cmi.2018.02.004 jaa45kyc 0.869483
3 Howie_2014 Etiology of Severe Childhood Pneumonia in The Gambia, West Africa, Determined by Conventional and Molecular Microbiological Analyses of Lung and Pleural Aspirate Samples Howie, Stephen R. C.; Morris, Gerard A. J.; Tokarz, Rafal; Ebruke, Bernard E.; Machuka, Eunice M.; Ideh, Readon C.; Chimah, Osaretin; Secka, Ousman; Townend, John; Dione, Michel; Oluwalana, Claire; Njie, Malick; Jallow, Mariatou; Hill, Philip C.; Antonio, Martin; Greenwood, Brian; Briese, Thomas; Mulholland, Kim; Corrah, Tumani; Lipkin, W. Ian; Adegbola, Richard A. 2014 2014-09-01 COMM-USE N PMC4130311 24867789.0 10.1093/cid/ciu384 b0tlco4t 0.861911 Sawardekar_2017, Hoang_2019, Krishnamurthy_2016 Krenke_2016, Davies_2003
4 Honkinen_2012 Viruses and bacteria in sputum samples of children with community-acquired pneumonia Honkinen, M.; Lahti, E.; Österback, R.; Ruuskanen, O.; Waris, M. 2012 2012-03-31 PMC N PMC7128628 21851481.0 10.1111/j.1469-0691.2011.03603.x eulcek2l 0.840884 Howie_2014 Ruohola_2006
5 Yatsyshina_2016 Detection of respiratory pathogens in pediatric acute otitis media by PCR and comparison of findings in the middle ear and nasopharynx Yatsyshina, Svetlana; Mayanskiy, Nikolay; Shipulina, Olga; Kulichenko, Tatiana; Alyabieva, Natalia; Katosova, Lyubovj; Lazareva, Anna; Skachkova, Tatyana; Elkina, Maria; Matosova, Svetlana; Shipulin, German 2016 2016-05-31 PMC N PMC7126741 26971180.0 10.1016/j.diagmicrobio.2016.02.010 6u229xs8 0.824208 Howie_2014 Ruohola_2006, Bulut_2006, Binks_2011
6 Bulut_2006 Acute otitis media and respiratory viruses Bulut, Yunus; Güven, Mehmet; Otlu, Bariş; Yenişehirli, Gülgün; Aladağ, İbrahim; Eyibilen, Ahmet; Doğru, Salim 2006 2006-09-12 PMC N PMC7086696 16967296.0 10.1007/s00431-006-0233-x a5ilu7za 0.785037 Ruohola_2006, Binks_2011
7 Slinger_2016 Direct molecular detection of a broad range of bacterial and viral organisms and Streptococcus pneumoniae vaccine serotypes in children with otitis media with effusion Slinger, Robert; Duval, Melanie; Langill, Jonathan; Bromwich, Matthew; MacCormick, Johnna; Chan, Francis; Vaccani, Jean-Philippe 2016 2016-04-29 COMM-USE N PMC4850712 27130295.0 10.1186/s13104-016-2040-4 cm8unyy1 0.726891 Howie_2014 Ruohola_2006, Binks_2011, Bulut_2006
8 Binks_2011 Viral-bacterial co-infection in Australian Indigenous children with acute otitis media Binks, Michael J; Cheng, Allen C; Smith-Vaughan, Heidi; Sloots, Theo; Nissen, Michael; Whiley, David; McDonnell, Joseph; Leach, Amanda J 2011 2011-06-07 COMM-USE N PMC3128050 21649905.0 10.1186/1471-2334-11-161 hadwwjkx 0.722438 Howie_2014 Ruohola_2006, Bulut_2006, Wald_2011
9 Jacoby_2007 Modelling the co-occurrence of Streptococcus pneumoniae with other bacterial and viral pathogens in the upper respiratory tract Jacoby, Peter; Watson, Kelly; Bowman, Jacinta; Taylor, Amanda; Riley, Thomas V.; Smith, David W.; Lehmann, Deborah 2007 2007-03-22 PMC N 17030494.0 10.1016/j.vaccine.2006.09.020 ry0irbtw 0.686033 Howie_2014, Hoang_2019
10 Hoang_2019 The dynamics and interactions of respiratory pathogen carriage among French pilgrims during the 2018 Hajj Hoang, Van-Thuan; Dao, Thi-Loi; Ly, Tran Duc Anh; Belhouchat, Khadidja; Chaht, Kamel Larbi; Gaudart, Jean; Mrenda, Bakridine Mmadi; Drali, Tassadit; Yezli, Saber; Alotaibi, Badriah; Fournier, Pierre-Edouard; Raoult, Didier; Parola, Philippe; de Santi, Vincent Pommier; Gautret, Philippe 2019 2019-11-21 COMM-USE N PMC6882464 31749410.0 10.1080/22221751.2019.1693247 h4i2t2cr 0.675183 Howie_2014, Krishnamurthy_2016 Hoang_2019
11 Blatt_2017 Impact of respiratory virus molecular testing on antibiotic utilization in community-acquired pneumonia Blatt, Stephen P.; Yultyev, Aleksandr; Huang, Miao; Friedstrom, Scott; Steinbrunner, Jennifer 2017 2017-12-01 PMC N PMC7132653 28865937.0 10.1016/j.ajic.2017.07.019 hr2x49wr 0.672008
12 Azeem_2017 Surveillance of Australian Hajj pilgrims for carriage of potentially pathogenic bacteria: Data from two pilot studies Azeem, Mohammad Irfan; Tashani, Mohamed; Badahdah, Al-Mamoon; Heron, Leon; Pedersen, Kristen; Jeoffreys, Neisha; Kok, Jen; Haworth, Elizabeth; Dwyer, Dominic E; Hill-Cawthorne, Grant; Rashid, Harunor; Booy, Robert 2017 2017-03-16 NONCOMM N PMC5352958 28352634.0 10.12998/wjcc.v5.i3.102 ou3md2bb 0.650452 Howie_2014, Hsueh_2005 Copete_2018, Hoang_2019
13 Ngo_C_2016 Predominant Bacteria Detected from the Middle Ear Fluid of Children Experiencing Otitis Media: A Systematic Review Ngo, Chinh C.; Massa, Helen M.; Thornton, Ruth B.; Cripps, Allan W. 2016 2016-03-08 COMM-USE N PMC4783106 26953891.0 10.1371/journal.pone.0150949 o79mdupz 0.648006 Howie_2014, Krishnamurthy_2016, Sawardekar_2017, Vergison_2008 Ruohola_2006, Binks_2011, Wald_2011, Stol_2013
14 Ruohola_2006 Microbiology of Acute Otitis Media in Children with Tympanostomy Tubes: Prevalences of Bacteria and Viruses Ruohola, Aino; Meurman, Olli; Nikkari, Simo; Skottman, Tuukka; Salmi, Aimo; Waris, Matti; Österback, Riikka; Eerola, Erkki; Allander, Tobias; Niesters, Hubert; Heikkinen, Terho; Ruuskanen, Olli 2006 2006-12-01 PMC N PMC7107988 17083014.0 10.1086/509332 7zq83ua2 0.640882 Wald_2011, Binks_2011, Krenke_2016
15 Jama-Kmiecik_2016 Pathogens Causing Upper Respiratory Tract Infections in Outpatients Jama-Kmiecik, A.; Frej-Mądrzak, M.; Sarowska, J.; Choroszy-Król, I. 2016 2016-05-28 PMC N PMC7122309 27235165.0 10.1007/5584_2016_19 azp2os5w 0.640882 Howie_2014, Blasi_1996, Hoang_2019 Ruohola_2006, Krenke_2016
16 Buzatto_2017 The pathogens profile in children with otitis media with effusion and adenoid hypertrophy Buzatto, G. P.; Tamashiro, E.; Proenca-Modena, J. L.; Saturno, T. H.; Prates, M. C.; Gagliardi, T. B.; Carenzi, L. R.; Massuda, E. T.; Hyppolito, M. A.; Valera, F. C. P.; Arruda, E.; Anselmo-Lima, W. T. 2017 2017-02-23 COMM-USE N PMC5322954 28231295.0 10.1371/journal.pone.0171049 gdg50omp 0.633567 Ruohola_2006, Kim_S_2019, Wald_2011
17 Carrol_2011 PCR Improves Diagnostic Yield from Lung Aspiration in Malawian Children with Radiologically Confirmed Pneumonia Carrol, Enitan D.; Mankhambo, Limangeni A.; Guiver, Malcolm; Banda, Daniel L.; Denis, Brigitte; Dove, Winifred; Jeffers, Graham; Molyneux, Elizabeth M.; Molyneux, Malcolm E.; Hart, C. Anthony; Graham, Stephen M. 2011 2011-06-14 COMM-USE N PMC3114850 21695128.0 10.1371/journal.pone.0021042 p93gd7rj 0.627772 Howie_2014 Krenke_2016, Kuroki_2010
18 De_Schutter_2011 Microbiology of Bronchoalveolar Lavage Fluid in Children With Acute Nonresponding or Recurrent Community-Acquired Pneumonia: Identification of Nontypeable Haemophilus influenzae as a Major Pathogen De Schutter, Iris; De Wachter, Elke; Crokaert, Françoise; Verhaegen, Jan; Soetens, Oriane; Piérard, Denis; Malfroot, Anne 2011 2011-06-15 PMC N PMC7107807 21628484.0 10.1093/cid/cir235 diwigcy9 0.621052 Howie_2014 Krenke_2016, Ruohola_2006
19 Allard_2011 Invasive bacterial infections following influenza: a time‐series analysis in Montréal, Canada, 1996–2008 Allard, R.; Couillard, M.; Pilon, P.; Kafka, M.; Bédard, L. 2011 2011-10-10 PMC N PMC5779805 21985083.0 10.1111/j.1750-2659.2011.00297.x gnxr24nr 0.620161
20 De_Schutter_2012 In young children, persistent wheezing is associated with bronchial bacterial infection: a retrospective analysis De Schutter, Iris; Dreesman, Alexandra; Soetens, Oriane; De Waele, Marc; Crokaert, Françoise; Verhaegen, Jan; Piérard, Denis; Malfroot, Anne 2012 2012-06-22 COMM-USE N PMC3420249 22726254.0 10.1186/1471-2431-12-83 izxhiusf 0.613005 Howie_2014, Blasi_1996, Hoang_2019 Krenke_2016, Ruohola_2006
21 Krenke_2016 Etiology of parapneumonic effusion and pleural empyema in children. The role of conventional and molecular microbiological tests. Krenke, Katarzyna; Sadowy, Ewa; Podsiadły, Edyta; Hryniewicz, Waleria; Demkow, Urszula; Kulus, Marek 2016 2016-07-31 PMC N PMC7126629 27296817.0 10.1016/j.rmed.2016.05.009 ogr2cdj3 0.603791 Howie_2014 Ruohola_2006
22 Kleemola_2006 Is there any specific association between respiratory viruses and bacteria in acute otitis media of young children? Kleemola, Marjaana; Nokso-Koivisto, Johanna; Herva, Elja; Syrjänen, Ritva; Lahdenkari, Mika; Kilpi, Terhi; Hovi, Tapani 2006 2006-03-31 PMC N 15992930.0 10.1016/j.jinf.2005.05.012 j4bivpu7 0.588059 Greenberg_2001
23 Mathew_2015 Etiology of community acquired pneumonia among children in India: prospective, cohort study Mathew, Joseph L.; Singhi, Sunit; Ray, Pallab; Hagel, Eva; Saghafian–Hedengren, Shanie; Bansal, Arun; Ygberg, Sofia; Sodhi, Kushaljit Singh; Kumar, B V Ravi; Nilsson, Anna 2015 2015-10-21 COMM-USE N PMC4623579 26528392.0 10.7189/jogh.05.020418 25ivll3q 0.575456 Howie_2014 Krenke_2016
24 Lin_C_2019 Etiology and characteristics of community-acquired pneumonia in an influenza epidemic period Lin, Chun; Chen, Huanzhu; He, Ping; Li, Yazhen; Ke, Changwen; Jiao, Xiaoyang 2019 2019-06-30 PMC N 31174691.0 10.1016/j.cimid.2019.03.004 2o4k24og 0.558375
25 Hoang_2019 Respiratory tract infections among French Hajj pilgrims from 2014 to 2017 Hoang, Van-Thuan; Ali-Salem, Saliha; Belhouchat, Khadidja; Meftah, Mohammed; Sow, Doudou; Dao, Thi-Loi; Ly, Tran Duc Anh; Drali, Tassadit; Ninove, Laetitia; Yezli, Saber; Alotaibi, Badriah; Raoult, Didier; Parola, Philippe; Pommier de Santi, Vincent; Gautret, Philippe 2019 2019-11-28 COMM-USE N PMC6883043 31780750.0 10.1038/s41598-019-54370-0 s11vwxtd 0.554755 Hoang_2019
26 Greenberg_2001 Vaccine prevention of acute otitis media Greenberg, David P.; Hoberman, Alejandro 2001 2001-01-01 PMC N PMC7089114 11892059.0 10.1007/s11882-001-0049-8 8621p7da 0.548274 Binks_2011, Ruohola_2006
27 Dalpke_2016 Underdiagnosing of Mycoplasma pneumoniae infections as revealed by use of a respiratory multiplex PCR panel Dalpke, Alexander; Zimmermann, Stefan; Schnitzler, Paul 2016 2016-09-30 PMC N PMC7127802 27377674.0 10.1016/j.diagmicrobio.2016.06.013 lcv5phyr 0.519318 Curran_2010
28 Shen_2015 Association of targeted multiplex PCR with resequencing microarray for the detection of multiple respiratory pathogens Shen, Hongwei; Zhu, Bingqing; Wang, Shulian; Mo, Haolian; Wang, Ji; Li, Jin; Zhang, Chen; Zeng, Huashu; Guan, Li; Shi, Weixian; Zhang, Yong; Ma, Xuejun 2015 2015-05-28 COMM-USE N PMC4446546 26074910.0 10.3389/fmicb.2015.00532 byqph47j 0.519248 Howie_2014, Curran_2010, Hsueh_2005 Copete_2018
29 Curran_2010 Development of a novel DNA microarray to detect bacterial pathogens in patients with chronic obstructive pulmonary disease (COPD) Curran, Tanya; Coulter, Wilson A.; Fairley, Derek J.; McManus, Terence; Kidney, Joe; Larkin, Mike; Moore, John E.; Coyle, Peter V. 2010 2010-03-31 PMC N PMC7132519 20074591.0 10.1016/j.mimet.2010.01.004 ai23on4t 0.511251 Parthasarathy_2006, Dalpke_2016 Kollef_2017
30 Ruohola_2013 Bacterial and viral interactions within the nasopharynx contribute to the risk of acute otitis media Ruohola, Aino; Pettigrew, Melinda M.; Lindholm, Laura; Jalava, Jari; Räisänen, Kati S.; Vainionpää, Raija; Waris, Matti; Tähtinen, Paula A.; Laine, Miia K.; Lahti, Elina; Ruuskanen, Olli; Huovinen, Pentti 2013 2013-03-31 None N PMC3571106 23266462.0 10.1016/j.jinf.2012.12.002 pdrjrllp 0.510030 Howie_2014, Hoang_2019, Verhagen_2013 Ruohola_2006, Marom_2012, Binks_2011
31 Gadsby_2016 Comprehensive Molecular Testing for Respiratory Pathogens in Community-Acquired Pneumonia Gadsby, Naomi J.; Russell, Clark D.; McHugh, Martin P.; Mark, Harriet; Conway Morris, Andrew; Laurenson, Ian F.; Hill, Adam T.; Templeton, Kate E. 2016 2016-04-01 NONCOMM N PMC4787606 26747825.0 10.1093/cid/civ1214 s04e6po9 0.508887 Blatt_2017, Dalpke_2016 Kuroki_2010
32 Dierig_2019 Mycoplasma pneumoniae detection in children with respiratory tract infections and influence on management – a retrospective cohort study in Switzerland Dierig, Alexa; Hirsch, Hans Hellmuth; Decker, Marie‐Luise; Bielicki, Julia Anna; Heininger, Ulrich; Ritz, Nicole 2019 2019-06-27 PMC N PMC7159768 31168877.0 10.1111/apa.14891 gvrcj4o6 0.483803
33 Ansart_2006 Pneumonia among Travelers Returning from Abroad Ansart, Séverine; Pajot, Olivier; Grivois, Jean-Philippe; Zeller, Valérie; Klement, Elise; Perez, Lucia; Bossi, Philippe; Bricaire, François; Caumes, Eric 2006 2006-03-10 PMC N PMC7107509 15109472.0 10.2310/7060.2004.17055 wup4jump 0.483784
34 Huijskens_2012 Viral and bacterial aetiology of community‐acquired pneumonia in adults Huijskens, Elisabeth G. W.; van Erkel, Adriana J. M.; Palmen, Fernand M. H.; Buiting, Anton G. M.; Kluytmans, Jan A. J. W.; Rossen, John W. A. 2012 2012-08-22 PMC N PMC5781003 22908940.0 10.1111/j.1750-2659.2012.00425.x h275nner 0.481687
35 Stol_2013 Microbial profiling does not differentiate between childhood recurrent acute otitis media and chronic otitis media with effusion Stol, Kim; Verhaegh, Suzanne J.C.; Graamans, Kees; Engel, Joost A.M.; Sturm, Patrick D.J.; Melchers, Willem J.G.; Meis, Jacques F.; Warris, Adilia; Hays, John P.; Hermans, Peter W.M. 2013 2013-04-30 PMC N PMC7132406 23369612.0 10.1016/j.ijporl.2012.12.016 23anx6ez 0.479349 Howie_2014, Blasi_1996 Ruohola_2006, Binks_2011, Wald_2011
36 Copete_2018 Genotyping and macrolide resistance of Mycoplasma pneumoniae identified in children with community-acquired pneumonia in Medellín, Colombia Copete, Angela Rocio; Aguilar, Yudy Alexandra; Rueda, Zulma Vanessa; Vélez, Lázaro Agustín 2018 2018-01-31 PMC N PMC7129344 29155089.0 10.1016/j.ijid.2017.11.019 2221s6hr 0.466276 Villacís_2020, Kuroki_2010
37 Nakayama_2007 Rapid optimization of antimicrobial chemotherapy given to pediatric patients with community-acquired pneumonia using PCR techniques with serology and standard culture Nakayama, Eiichi; Hasegawa, Keiko; Morozumi, Miyuki; Kobayashi, Reiko; Chiba, Naoko; Ubukata, Kimiko; Nakayama, Eiichi; Iitsuka, Taketoshi; Tajima, Takeshi; Sunakawa, Keisuke 2007 2007-12-31 PMC N 17982719.0 10.1007/s10156-007-0535-6 fejho1of 0.461160 Kuroki_2010, Bulut_2006
38 Kuroki_2010 Investigation of pneumonia-causing pathogenic organisms in children and the usefulness of tebipenem pivoxil for their treatment Kuroki, Haruo; Tateno, Noriko; Ikeda, Hiroyuki; Saito, Naoko 2010 2010-12-31 PMC N 10.1007/s10156-010-0053-9 j49dp6q2 0.458385 Dalpke_2016, Hoang_2019 Krenke_2016, Copete_2018
39 Song_2008 Epidemiology and clinical outcomes of community-acquired pneumonia in adult patients in Asian countries: a prospective study by the Asian network for surveillance of resistant pathogens Song, Jae-Hoon; Oh, Won Sup; Kang, Cheol-In; Chung, Doo Ryeon; Peck, Kyong Ran; Ko, Kwan Soo; Yeom, Joon Sup; Kim, Choon Kwan; Kim, Shin Woo; Chang, Hyun-Ha; Kim, Yeon-Sook; Jung, Sook-In; Tong, Zhaohui; Wang, Qingtao; Huang, Shao-Guang; Liu, Jien-Wei; Lalitha, M.K.; Tan, Ban-Hock; Van, Pham Hung; Carlos, Celia C.; So, Thomas 2008 2008-02-29 PMC N PMC7134693 18162378.0 10.1016/j.ijantimicag.2007.09.014 hd122vtq 0.429009 Howie_2014, Hsueh_2005
40 Marguet_1998 Épidémiologie des pneumopathies communautaires de l'enfant. Données actuelles Marguet, C; Bocquel, N; Mallet, E 1998 1998-12-31 PMC N 10223154.0 10.1016/s0929-693x(97)83481-1 1i8ibjjm 0.427435 Krishnamurthy_2016
41 Cao_B_2010 Viral and Mycoplasma pneumoniae community-acquired pneumonia and novel clinical outcome evaluation in ambulatory adult patients in China Cao, B.; Ren, L.-L.; Zhao, F.; Gonzalez, R.; Song, S.-F.; Bai, L.; Yin, Y. D.; Zhang, Y.-Y.; Liu, Y.-M.; Guo, P.; Zhang, J.-Z.; Wang, J.-W.; Wang, C. 2010 2010-07-11 PMC N PMC7088295 20623362.0 10.1007/s10096-010-1003-2 usf1wiwp 0.419308 Howie_2014
42 Gelfer_2015 The clinical impact of the detection of potential etiologic pathogens of community-acquired pneumonia Gelfer, Gita; Leggett, James; Myers, Jillian; Wang, Luan; Gilbert, David N. 2015 2015-12-31 PMC N PMC7125660 26341706.0 10.1016/j.diagmicrobio.2015.08.001 wj0esjwi 0.409528 Dalpke_2016 Kuroki_2010
43 Choi_2015 Clinical usefulness of pneumococcal urinary antigen test, stratified by disease severity and serotypes Choi, Min Joo; Song, Joon Young; Cheong, Hee Jin; Jeon, Ji Ho; Kang, Seong Hui; Jung, Eun Ju; Noh, Ji Yun; Kim, Woo Joo 2015 2015-09-30 PMC N PMC7128949 26212866.0 10.1016/j.jiac.2015.06.003 sketwkau 0.407622 Howie_2014, Sawardekar_2017 Kuroki_2010
44 Call_2009 Nosocomial Contamination of Laryngoscope Handles: Challenging Current Guidelines Call, Tyler R.; Auerbach, Frederic J.; Riddell, Scott W.; Kiska, Deanna L.; Thongrod, Sumena C.; Tham, See Wan; Nussmeier, Nancy A. 2009 2009-08-01 PMC N PMC4006105 19608822.0 10.1213/ane.0b013e3181ac1080 vj7pqlfc 0.393656 Hsueh_2005, Kecojevic_2014 Ruohola_2006, Krenke_2016
45 DeMuri_2013 Microbiology of Acute, Subacute, and Chronic Rhinosinusitis in Children DeMuri, Gregory P.; Wald, Ellen R. 2013 2013-12-05 PMC N PMC7120624 10.1007/978-1-4939-0265-1_5 4r6ls98o 0.392345 Blasi_1996, Krishnamurthy_2016 Wald_2011, Ruohola_2006
46 Camelo-Castillo_2019 Nasopharyngeal Microbiota in Children With Invasive Pneumococcal Disease: Identification of Bacteria With Potential Disease-Promoting and Protective Effects Camelo-Castillo, Anny; Henares, Desirée; Brotons, Pedro; Galiana, Antonio; Rodríguez, Juan Carlos; Mira, Alex; Muñoz-Almagro, Carmen 2019 2019-01-28 COMM-USE N PMC6360994 30745895.0 10.3389/fmicb.2019.00011 hg0qslyx 0.380678 Chonmaitree_2017
47 Bogaert_2011 Variability and Diversity of Nasopharyngeal Microbiota in Children: A Metagenomic Analysis Bogaert, Debby; Keijser, Bart; Huse, Susan; Rossen, John; Veenhoven, Reinier; van Gils, Elske; Bruin, Jacob; Montijn, Roy; Bonten, Marc; Sanders, Elisabeth 2011 2011-02-28 COMM-USE N PMC3046172 21386965.0 10.1371/journal.pone.0017035 hp0bp19e 0.371930 Chonmaitree_2017, Hilty_2012
48 Lee_K_2016 The role of respiratory viruses in the etiology of bacterial pneumonia: An ecological perspective Lee, Kyu Han; Gordon, Aubree; Foxman, Betsy 2016 2016-02-15 COMM-USE N PMC4801059 26884414.0 10.1093/emph/eow007 54lx7cl3 0.363299
49 Sawardekar_2017 Haemophilus influenzae Type a Meningitis in Immunocompetent Child, Oman, 2015 Sawardekar, Kiran P. 2017 2017-07-23 PMC N PMC5512487 28628438.0 10.3201/eid2307.170311 sflndhb3 0.361982 Howie_2014, Greenberg_2001
50 Bello_2014 Inflammatory response in mixed viral-bacterial community-acquired pneumonia Bello, Salvador; Mincholé, Elisa; Fandos, Sergio; Lasierra, Ana B; Ruiz, María A; Simon, Ana L; Panadero, Carolina; Lapresta, Carlos; Menendez, Rosario; Torres, Antoni 2014 2014-07-29 COMM-USE N PMC4118651 25073709.0 10.1186/1471-2466-14-123 jieoxgfx 0.339594
51 Hon_K_2012 Megapneumonia Coinfection: pneumococcus, Mycoplasma pneumoniae, and Metapneumovirus Hon, Kam Lun; Ip, Margaret; Chu, Winnie Chiu Wing; Wong, William 2012 2012-10-17 COMM-USE N PMC3488377 23193411.0 10.1155/2012/310104 harzowk2 0.336424 Krenke_2016
52 Fatykhova_2015 Serotype 1 and 8 Pneumococci Evade Sensing by Inflammasomes in Human Lung Tissue Fatykhova, Diana; Rabes, Anne; Machnik, Christoph; Guruprasad, Kunchur; Pache, Florence; Berg, Johanna; Toennies, Mario; Bauer, Torsten T.; Schneider, Paul; Schimek, Maria; Eggeling, Stephan; Mitchell, Timothy J.; Mitchell, Andrea M.; Hilker, Rolf; Hain, Torsten; Suttorp, Norbert; Hippenstiel, Stefan; Hocke, Andreas C.; Opitz, Bastian 2015 2015-08-28 COMM-USE N PMC4552725 26317436.0 10.1371/journal.pone.0137108 xq7wcxjy 0.335143
53 Gaviria-Agudelo_2016 The Effect of 13-Valent Pneumococcal Conjugate Vaccine on the Serotype Distribution and Antibiotic Resistance Profiles in Children With Invasive Pneumococcal Disease Gaviria-Agudelo, Claudia L; Jordan-Villegas, Alejandro; Garcia, Carla; McCracken, George H 2016 2016-02-23 PMC N PMC7107452 26907814.0 10.1093/jpids/piw005 704p47er 0.331239 Sawardekar_2017 Choi_2015, Laufer_2010, Copete_2018, Alotaibi_2017
54 de_Steenhuijsen_Piters_2019 Interaction between the nasal microbiota and S. pneumoniae in the context of live-attenuated influenza vaccine de Steenhuijsen Piters, Wouter A. A.; Jochems, Simon P.; Mitsi, Elena; Rylance, Jamie; Pojar, Sherin; Nikolaou, Elissavet; German, Esther L.; Holloway, Mark; Carniel, Beatriz F.; Chu, Mei Ling J. N.; Arp, Kayleigh; Sanders, Elisabeth A. M.; Ferreira, Daniela M.; Bogaert, Debby 2019 2019-07-05 None N PMC6611866 31278315.0 10.1038/s41467-019-10814-9 dv2qyke1 0.323148 Jiang_2014
55 Gebru_2017 Aerobic bacteriological studies on the respiratory tracts of apparently healthy and pneumonic camels (Camelus dromedaries) in selected districts of Afar Region, Ethiopia Gebru, Mu’uz; Tefera, Genene; Dawo, Fufa; Tessema, Tesfaye Sisay 2017 2017-11-16 PMC N PMC7089579 29147933.0 10.1007/s11250-017-1476-4 nx0a3nvd 0.323148 Hsueh_2005, Souto_2016
56 Green_1998 Nonstreptococcal pharyngitis Green, Michael 1998 1998-01-31 PMC N 10.1016/s1045-1870(98)80052-6 vya9gotm 0.311132 Krishnamurthy_2016 Ruohola_2006, DuBose_2002
57 Farida_2015 Viruses and Gram-negative bacilli dominate the etiology of community-acquired pneumonia in Indonesia, a cohort study Farida, Helmia; Gasem, M. Hussein; Suryanto, Agus; Keuter, Monique; Zulkarnain, Nasirun; Satoto, Bambang; van der Eijk, Annemiek A.; Djokomoeljanto, R.; Wahyono, Hendro; Verbrugh, Henri A.; Severin, Juliëtte A.; van den Broek, Peterhans J. 2015 2015-09-30 PMC N PMC7110756 26255889.0 10.1016/j.ijid.2015.07.023 djorkl0q 0.303627 Krenke_2016