| 1 |
Endoh_2005 |
Species-independent detection of RNA virus by representational difference analysis using non-ribosomal hexanucleotides for reverse transcription |
Endoh, Daiji; Mizutani, Tetsuya; Kirisawa, Rikio; Maki, Yoshiyuki; Saito, Hidetoshi; Kon, Yasuhiro; Morikawa, Shigeru; Hayashi, Masanobu |
2005 |
2005-04-07 |
PMC |
N |
PMC1074749 |
15817564.0 |
10.1093/nar/gni064 |
402ls2aq |
0.575564 |
|
|
| 2 |
Pyrc_2007 |
Detection of New Viruses by VIDISCA: Virus Discovery Based on cDNA-Amplified Fragment Length Polymorphism |
Pyrc, Krzysztof; Jebbink, Maarten F.; Berkhout, Ben; van der Hoek, Lia |
2007 |
2007-11-28 |
PMC |
N |
PMC7121709 |
19057862.0 |
10.1007/978-1-59745-181-9_7 |
nxutmxp6 |
0.529621 |
|
|
| 3 |
Kang_2011 |
Improvement of the specificity of a pan‐viral microarray by using genus‐specific oligonucleotides and reduction of interference by host genomes |
Kang, Xiaoping; Qin, Chengfeng; Li, Yongqiang; Liu, Hong; Lin, Fang; Li, Yuchang; Li, Jing; Zhu, Qingyu; Yang, Yinhui |
2011 |
2011-07-07 |
PMC |
N |
PMC7167123 |
21739454.0 |
10.1002/jmv.22157 |
kssigadb |
0.521504 |
Endoh_2005, Chen_2018, Oba_M_2018 |
|
| 4 |
de_Vries_2011 |
A Sensitive Assay for Virus Discovery in Respiratory Clinical Samples |
de Vries, Michel; Deijs, Martin; Canuti, Marta; van Schaik, Barbera D. C.; Faria, Nuno R.; van de Garde, Martijn D. B.; Jachimowski, Loes C. M.; Jebbink, Maarten F.; Jakobs, Marja; Luyf, Angela C. M.; Coenjaerts, Frank E. J.; Claas, Eric C. J.; Molenkamp, Richard; Koekkoek, Sylvie M.; Lammens, Christine; Leus, Frank; Goossens, Herman; Ieven, Margareta; Baas, Frank; van der Hoek, Lia |
2011 |
2011-01-24 |
COMM-USE |
N |
PMC3025933 |
21283679.0 |
10.1371/journal.pone.0016118 |
mduxxe5y |
0.515775 |
Endoh_2005 |
|
| 5 |
Gardner_2014 |
Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes |
Gardner, Shea N.; Jaing, Crystal J.; Elsheikh, Maher M.; Peña, José; Hysom, David A.; Borucki, Monica K. |
2014 |
2014-08-03 |
COMM-USE |
N |
PMC4137498 |
25157264.0 |
10.1155/2014/101894 |
1e44usl6 |
0.488743 |
|
|
| 6 |
Lienard_2014 |
Undressing of Waddlia chondrophila to enrich its outer membrane proteins to develop a new species-specific ELISA |
Lienard, J; Croxatto, A; Gervaix, A; Posfay-Barbe, K; Baud, D; Kebbi-Beghdadi, C; Greub, G |
2014 |
2014-01-16 |
None |
N |
PMC4184618 |
25356333.0 |
10.1002/2052-2975.26 |
gm41zt85 |
0.479424 |
Gardner_2004 |
|
| 7 |
Li_K_2012 |
Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing |
Li, Kelvin; Shrivastava, Susmita; Brownley, Anushka; Katzel, Dan; Bera, Jayati; Nguyen, Anh Thu; Thovarai, Vishal; Halpin, Rebecca; Stockwell, Timothy B |
2012 |
2012-11-06 |
COMM-USE |
N |
PMC3548747 |
23131097.0 |
10.1186/1743-422x-9-261 |
xjfb83is |
0.470796 |
Phillippy_2009 |
|
| 8 |
Kim_H_2017 |
MRPrimerV: a database of PCR primers for RNA virus detection |
Kim, Hyerin; Kang, NaNa; An, KyuHyeon; Kim, Doyun; Koo, JaeHyung; Kim, Min-Soo |
2017 |
2017-01-04 |
NONCOMM |
N |
PMC5210568 |
27899620.0 |
10.1093/nar/gkw1095 |
bo215gm9 |
0.422965 |
Gardner_2004 |
|
| 9 |
Hoffmann_2020 |
PriSeT: Efficient De Novo Primer Discovery |
Marie Hoffmann; Michael T. Monaghan; Knut Reinert |
2020 |
2020-04-07 |
BioRxiv |
Y |
|
|
10.1101/2020.04.06.027961 |
3b3hv53b |
0.413086 |
Chang_2011, Lee_C_2017, Deng_2015, Phillippy_2009 |
Zhang_2017, Ayginin_2018 |
| 10 |
Jones_2006 |
A long distance RT-PCR able to amplify the Pestivirus genome |
Jones, Leandro R.; Zandomeni, Rubén O.; Weber, E. Laura |
2006 |
2006-06-30 |
PMC |
N |
PMC7112918 |
16497393.0 |
10.1016/j.jviromet.2006.01.005 |
lx1i00wj |
0.406991 |
Endoh_2005 |
|
| 11 |
Mbareche_2020 |
Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols |
Mbareche, Hamza; Veillette, Marc; Bilodeau, Guillaume; Duchaine, Caroline |
2020 |
2020-02-17 |
COMM-USE |
N |
PMC7032056 |
32110484.0 |
10.7717/peerj.8523 |
nsttoyr2 |
0.396747 |
Chang_2011, Cheng_2013, Harel_2019 |
|
| 12 |
Jonassen_2007 |
Detection and Sequence Characterization of the 3′-End of Coronavirus Genomes Harboring the Highly Conserved RNA Motif s2m |
Jonassen, Christine Monceyron |
2007 |
2007-11-28 |
PMC |
N |
PMC7122199 |
19057866.0 |
10.1007/978-1-59745-181-9_3 |
xl4u7n6r |
0.376780 |
|
|
| 13 |
Neill_2014 |
Simultaneous rapid sequencing of multiple RNA virus genomes |
Neill, John D.; Bayles, Darrell O.; Ridpath, Julia F. |
2014 |
2014-06-01 |
PMC |
N |
PMC7119728 |
24589514.0 |
10.1016/j.jviromet.2014.02.016 |
crtpzad7 |
0.354991 |
Chen_2018 |
Yang_2018 |
| 14 |
Timoshenko_2009 |
Identification of mutations in a temperature‐sensitive mutant (tsm5) of murine cytomegalovirus using complementary genome sequencing |
Timoshenko, Olga; Al‐Ali, Abdulaziz; Martin, Brian A.B.; Sweet, Clive |
2009 |
2009-01-16 |
PMC |
N |
PMC7166533 |
19152394.0 |
10.1002/jmv.21419 |
awi7bnsc |
0.347293 |
Whiteford_2005, Harel_2019 |
|
| 15 |
Hu_Y_2005 |
Rapid approach to identify an unrecognized viral agent |
Hu, Yuan; Hirshfield, Irvin |
2005 |
2005-07-31 |
PMC |
N |
PMC7112820 |
15893569.0 |
10.1016/j.jviromet.2005.02.016 |
7bm6ffvv |
0.310192 |
Chen_2018 |
|
| 16 |
Chen_2018 |
Next-generation sequencing library preparation method for identification of RNA viruses on the Ion Torrent Sequencing Platform |
Chen, Guiqian; Qiu, Yuan; Zhuang, Qingye; Wang, Suchun; Wang, Tong; Chen, Jiming; Wang, Kaicheng |
2018 |
2018-05-09 |
PMC |
N |
PMC7088580 |
29744712.0 |
10.1007/s11262-018-1568-x |
utvf8yh6 |
0.306239 |
Deng_2015, Harel_2019, Xu_L_2019 |
Yang_2018, Qiu_Y_2017 |
| 17 |
ZHANG_2018 |
VSITA, an Improved Approach of Target Amplification in the Identification of Viral Pathogens |
ZHANG, Yi; ZHANG, Chen; LI, Bo; LI, Yang; Zhou, HE Xiao; LI, Acher; WU, Wei; DUAN, Su Xia; QIU, Fang Zhou; WANG, Ji; SHEN, Xin Xin; YANG, Meng Jie; LI, De Xin; MA, Xue Jun |
2018 |
2018-04-30 |
PMC |
N |
PMC7135048 |
29773090.0 |
10.3967/bes2018.035 |
7dcl9txk |
0.305546 |
Endoh_2005, Whiteford_2005 |
|
| 18 |
Fan_X_2006 |
Efficient amplification and cloning of near full-length hepatitis C virus genome from clinical samples |
Fan, Xiaofeng; Xu, Yanjuan; Di Bisceglie, Adrian M. |
2006 |
2006-08-11 |
PMC |
N |
PMC7092855 |
16793008.0 |
10.1016/j.bbrc.2006.06.039 |
whv88ggl |
0.303132 |
|
|
| 19 |
Qiu_Y_2017 |
Detection of viromes of RNA viruses using the next generation sequencing libraries prepared by three methods |
Qiu, Yuan; Chen, Ji-Ming; Wang, Tong; Hou, Guang-Yu; Zhuang, Qing-Ye; Wu, Run; Wang, Kai-Cheng |
2017 |
2017-06-02 |
PMC |
N |
PMC7111271 |
28501627.0 |
10.1016/j.virusres.2017.05.003 |
ecpicv5v |
0.300770 |
Chen_2018, Endoh_2005 |
|