Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 36 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Ali_M_2015 Throat and nasal swabs for molecular detection of respiratory viruses in acute pharyngitis Ali, Mohsin; Han, Sangsu; Gunst, Chris J.; Lim, Steve; Luinstra, Kathy; Smieja, Marek 2015 2015-10-29 COMM-USE N PMC4625558 26511714.0 10.1186/s12985-015-0408-z 2t40ss6h 0.794495 DeByle_2012 Robinson_2008, Öhrmalm_2010
2 Emerson_2013 Home Self-Collection of Nasal Swabs for Diagnosis of Acute Respiratory Virus Infections in Children With Cystic Fibrosis Emerson, Julia; Cochrane, Elizabeth; McNamara, Sharon; Kuypers, Jane; Gibson, Ronald L.; Campbell, Angela P. 2013 2013-07-14 PMC N PMC3869469 24363931.0 10.1093/jpids/pit039 t0asknzu 0.747337
3 Robinson_2008 Use of Throat Swab or Saliva Specimens for Detection of Respiratory Viruses in Children Robinson, Joan L.; Lee, Bonita E.; Kothapalli, Sushma; Craig, William R.; Fox, Julie D. 2008 2008-04-01 PMC N PMC7107872 18444806.0 10.1086/529386 gcrbcoj5 0.728873 To_K_2017
4 Larios_2011 Self-Collected Mid-Turbinate Swabs for the Detection of Respiratory Viruses in Adults with Acute Respiratory Illnesses Larios, Oscar E.; Coleman, Brenda L.; Drews, Steven J.; Mazzulli, Tony; Borgundvaag, Bjug; Green, Karen; McGeer, Allison J. 2011 2011-06-23 COMM-USE N PMC3121745 21731708.0 10.1371/journal.pone.0021335 qusjlntc 0.692237 Flynn_2018 Emerson_2013
5 DeByle_2012 Comparison of nasopharyngeal flocked swabs and nasopharyngeal wash collection methods for respiratory virus detection in hospitalized children using real-time polymerase chain reaction DeByle, Carolynn; Bulkow, Lisa; Miernyk, Karen; Chikoyak, Lori; Hummel, Kimberlee Boyd; Hennessy, Thomas; Singleton, Rosalyn 2012 2012-10-31 None N PMC4655598 22728277.0 10.1016/j.jviromet.2012.06.009 9kpr2muk 0.669470
6 Fisher_2019 Evaluating addition of self-collected throat swabs to nasal swabs for respiratory virus detection Fisher, Cynthia E.; Boeckh, Michael; Jerome, Keith R.; Englund, Janet; Kuypers, Jane 2019 2019-06-30 PMC N PMC6587583 30978619.0 10.1016/j.jcv.2019.04.001 xpog0gpa 0.642451 DeByle_2012, Chan_2004, Ali_M_2015, Leekha_2013 Emerson_2013, Robinson_2008, Larios_2011
7 Dhiman_2012 Effectiveness of Patient-Collected Swabs for Influenza Testing Dhiman, Neelam; Miller, Rita M.; Finley, Janet L.; Sztajnkrycer, Matthew D.; Nestler, David M.; Boggust, Andy J.; Jenkins, Sarah M.; Smith, Thomas F.; Wilson, John W.; Cockerill, Franklin R.; Pritt, Bobbi S. 2012 2012-06-30 None N PMC3538476 22551906.0 10.1016/j.mayocp.2012.02.011 0h0jcqe6 0.638917 DeByle_2012
8 Spyridaki_2009 Comparison of four nasal sampling methods for the detection of viral pathogens by RT-PCR—A GA2LEN project Spyridaki, Irini S.; Christodoulou, Ioannis; de Beer, Lieke; Hovland, Vegard; Kurowski, Marcin; Olszewska-Ziąber, Agnieszka; Carlsen, Kai-Håkon; Lødrup-Carlsen, Karin; van Drunen, Cornelis M.; Kowalski, Marek L.; Molenkamp, Richard; Papadopoulos, Nikolaos G. 2009 2009-03-31 PMC N PMC7112903 19041346.0 10.1016/j.jviromet.2008.10.027 6ynbd4rz 0.610045 DeByle_2012
9 Alsaleh_2014 Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control Alsaleh, Asma N; Whiley, David M; Bialasiewicz, Seweryn; Lambert, Stephen B; Ware, Robert S; Nissen, Michael D; Sloots, Theo P; Grimwood, Keith 2014 2014-01-09 COMM-USE N PMC3897990 24405747.0 10.1186/1471-2334-14-15 29jbf9ik 0.551708 Memish_2014
10 Ip_D_2011 Validation of Self-swab for Virologic Confirmation of Influenza Virus Infections in a Community Setting Ip, Dennis K. M.; Schutten, Martin; Fang, Vicky J.; Fung, Rita O. P.; Dutkowski, Regina T.; Chan, Kwok-Hung; Leung, Gabriel M.; Peiris, J. S. Malik; Cowling, Benjamin J. 2011 2011-12-23 PMC N PMC3266138 22198963.0 10.1093/infdis/jir803 ruba65p5 0.542854
11 Vargas_2016 Pilot study of participant-collected nasal swabs for acute respiratory infections in a low-income, urban population Vargas, Celibell Y; Wang, Liqun; Castellanos de Belliard, Yaritza; Morban, Maria; Diaz, Hilbania; Larson, Elaine L; LaRussa, Philip; Saiman, Lisa; Stockwell, Melissa S 2016 2016-01-06 NONCOMM N PMC4708198 26793005.0 10.2147/clep.s95847 66r1k03d 0.532657 Emerson_2013
12 Flynn_2018 Influenza D Virus in Cattle, Ireland Flynn, Orla; Gallagher, Clare; Mooney, Jean; Irvine, Claire; Ducatez, Mariette; Hause, Ben; McGrath, Guy; Ryan, Eoin 2018 2018-02-23 PMC N PMC5782902 29350168.0 10.3201/eid2402.170759 ngs2kh6j 0.522060
13 Preiksaitis_2015 A patient self-collection method for longitudinal monitoring of respiratory virus infection in solid organ transplant recipients Preiksaitis, Carl M.; Kuypers, Jane M.; Fisher, Cynthia E.; Campbell, Angela P.; Jerome, Keith R.; Huang, Meei-Li; Boeckh, Michael; Limaye, Ajit P. 2015 2015-01-31 None N PMC4629250 25464966.0 10.1016/j.jcv.2014.10.021 f7lxlnwi 0.522022
14 Leekha_2013 Viral detection using a multiplex polymerase chain reaction–based assay in outpatients with upper respiratory infection Leekha, Surbhi; Irish, Cole L.; Schneider, Susan K.; Fernholz, Emily C.; Espy, Mark J.; Cunningham, Scott A.; Patel, Robin; Juhn, Young J.; Pritt, Bobbi; Smith, Thomas F.; Sampathkumar, Priya 2013 2013-02-28 PMC N PMC7127585 23182565.0 10.1016/j.diagmicrobio.2012.10.016 jgvqqeg3 0.482436
15 Yondon_2014 Equine Influenza A(H3N8) Virus Isolated from Bactrian Camel, Mongolia Yondon, Myagmarsukh; Zayat, Batsukh; Nelson, Martha I.; Heil, Gary L.; Anderson, Benjamin D.; Lin, Xudong; Halpin, Rebecca A.; McKenzie, Pamela P.; White, Sarah K.; Wentworth, David E.; Gray, Gregory C. 2014 2014-12-23 PMC N PMC4257804 25418532.0 10.3201/eid2012.140435 hc7efqsg 0.468441
16 Waghmare_2020 Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics Alpana Waghmare; Elizabeth M Krantz; Subhasish Baral; Emma Vasquez; Tillie Loeffelholz; E. Lisa Chung; Urvashi Pandey; Jane Kuypers; Elizabeth R Duke; Keith R Jerome; Alexander L Greninger; Daniel B Reeves; Florian Hladik; E Fabian Cardozo-Ojeda; Michael Boeckh; Joshua T Schiffer 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.03.20051706 89s17ytr 0.431071
17 Hernes_2010 Swabbing for respiratory viral infections in older patients: a comparison of rayon and nylon flocked swabs Hernes, S. S.; Quarsten, H.; Hagen, E.; Lyngroth, A. L.; Pripp, A. H.; Bjorvatn, B.; Bakke, P. S. 2010 2010-09-18 NONCOMM N PMC3022161 20853014.0 10.1007/s10096-010-1064-2 ivu632j2 0.426785 DeByle_2012, Chan_2004, Ali_M_2015, Flynn_2018
18 Akmatov_2012 Equivalence of Self- and Staff-Collected Nasal Swabs for the Detection of Viral Respiratory Pathogens Akmatov, Manas K.; Gatzemeier, Anja; Schughart, Klaus; Pessler, Frank 2012 2012-11-14 COMM-USE N PMC3498275 23155387.0 10.1371/journal.pone.0048508 v2wovcqd 0.405416 DeByle_2012, Chieochansin_2010 Emerson_2013, Larios_2011
19 Gangell_2014 Feasibility of parental collected nasal swabs for virus detection in young children with cystic fibrosis Gangell, C.L.; Shackleton, C.; Poreddy, S.; Kappers, J.; Gaydon, J.E.; Sloots, T.P.; Stick, S.M.; Ranganathan, S.C.; Sly, P.D. 2014 2014-12-31 PMC N PMC7105194 24637444.0 10.1016/j.jcf.2014.02.009 nrc1gyvo 0.399020 Ma_X_2020
20 Tu_Y_2020 Patient-collected tongue, nasal, and mid-turbinate swabs for SARS-CoV-2 yield equivalent sensitivity to health care worker collected nasopharyngeal swabs Yuan-Po Tu; Rachel Jennings; Brian Hart; Gerald Cangelosi; Rachel Wood; Kevin Wehber; Prateek Verma; Deneen Vojta; Ethan M Berke 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.01.20050005 9efyzmiz 0.371990 Emerson_2013
21 Cordey_2012 Pilot Evaluation of RT-PCR/Electrospray Ionization Mass Spectrometry (PLEX-ID/Flu assay) on Influenza-Positive Specimens Cordey, Samuel; Thomas, Yves; Suter, Patricia; Kaiser, Laurent 2012 2012-05-09 NONCOMM N PMC3355350 22611461.0 10.2174/1874357901206010064 085v7n6k 0.354647
22 Öhrmalm_2010 Flocked nasal swab versus nasopharyngeal aspirate for detection of respiratory tract viruses in immunocompromised adults: a matched comparative study Öhrmalm, Lars; Wong, Michelle; Rotzén-Östlund, Maria; Norbeck, Oscar; Broliden, Kristina; Tolfvenstam, Thomas 2010 2010-11-26 COMM-USE N PMC3001728 21110854.0 10.1186/1471-2334-10-340 ly8b07no 0.330810 Wikramaratna_2020, Chieochansin_2010
23 To_K_2017 Additional molecular testing of saliva specimens improves the detection of respiratory viruses To, Kelvin KW; Lu, Lu; Yip, Cyril CY; Poon, Rosana WS; Fung, Ami MY; Cheng, Andrew; Lui, Daniel HK; Ho, Deborah TY; Hung, Ivan FN; Chan, Kwok-Hung; Yuen, Kwok-Yung 2017 2017-06-07 COMM-USE Y PMC5520312 28588283.0 10.1038/emi.2017.35 9zhmmvdg 0.320082 van_Kruijssen_2006