Topic 01 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 36 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Ogawa_2019 The microbiological characteristics of lower respiratory tract infection in patients with neuromuscular disorders: An investigation based on a multiplex polymerase chain reaction to detect viruses and a clone library analysis of the bacterial 16S rRNA gene sequence in sputum samples Ogawa, Masato; Hoshina, Takayuki; Haro, Kaoru; Kumadaki, Tokiko; Ishii, Masahiro; Fujino, Yoshihisa; Fukuda, Kazumasa; Kusuhara, Koichi 2019 2019-10-31 PMC N PMC7105058 30898603.0 10.1016/j.jmii.2019.01.002 6aki8jmf 0.892208 van_Kruijssen_2006
2 Brittain-Long_2010 Prospective evaluation of a novel multiplex real-time PCR assay for detection of fifteen respiratory pathogens—Duration of symptoms significantly affects detection rate Brittain-Long, Robin; Westin, Johan; Olofsson, Sigvard; Lindh, Magnus; Andersson, Lars-Magnus 2010 2010-03-31 PMC N PMC7108433 20080440.0 10.1016/j.jcv.2009.12.010 093yih5n 0.888234 van_Kruijssen_2006, Ogawa_2019
3 van_Kruijssen_2006 Detection of respiratory pathogens by real-time PCR in children with clinical suspicion of pertussis van Kruijssen, Alida M.; Templeton, Kate E.; van der Plas, Roos N.; van Doorn, H. Rogier; Claas, Eric C. J.; Sukhai, Ram N.; Kuijper, Ed J. 2006 2006-12-20 PMC N PMC7086727 17177069.0 10.1007/s00431-006-0378-7 rf933a0y 0.864649
4 Huijskens_2013 Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community‐acquired pneumonia Huijskens, Elisabeth G. W.; Rossen, John W. A.; Kluytmans, Jan A. J. W.; van der Zanden, Adri G. M.; Koopmans, Marion 2013 2013-08-20 COMM-USE N PMC4186473 23957707.0 10.1111/irv.12153 jk4ccm03 0.804749 Ogawa_2019, van_Kruijssen_2006
5 Hammitt_2012 A Preliminary Study of Pneumonia Etiology Among Hospitalized Children in Kenya Hammitt, Laura L.; Kazungu, Sidi; Morpeth, Susan C.; Gibson, Dustin G.; Mvera, Benedict; Brent, Andrew J.; Mwarumba, Salim; Onyango, Clayton O.; Bett, Anne; Akech, Donald O.; Murdoch, David R.; Nokes, D. James; Scott, J. Anthony G. 2012 2012-04-01 PMC N PMC3297554 22403235.0 10.1093/cid/cir1071 ajnn2g6x 0.755669
6 Kainulainen_2010 Recurrent and persistent respiratory tract viral infections in patients with primary hypogammaglobulinemia Kainulainen, Leena; Vuorinen, Tytti; Rantakokko-Jalava, Kaisu; Österback, Riikka; Ruuskanen, Olli 2010 2010-07-31 PMC N PMC7112312 20541246.0 10.1016/j.jaci.2010.04.016 u12aa739 0.743697
7 Engelmann_2017 In Vivo Persistence of Human Rhinoviruses in Immunosuppressed Patients Engelmann, Ilka; Dewilde, Anny; Lazrek, Mouna; Batteux, Mathilde; Hamissi, Aminati; Yakoub-Agha, Ibrahim; Hober, Didier 2017 2017-02-02 COMM-USE N PMC5289482 28151988.0 10.1371/journal.pone.0170774 pj7xjo9q 0.669195
8 Garcia_2020 Rapid diagnosis of SARS-CoV-2 infection by detecting IgG and IgM antibodies with an immunochromatographic device: a prospective single-center study Felipe Perez Garcia; Ramon Perez Tanoira; Juan Pedro Romanyk Cabrera; Teresa Arroyo Serrano; Peña Gomez Herruz; Juan Cuadros Gonzalez 2020 2020-04-15 BioRxiv Y 10.1101/2020.04.11.20062158 t6rs1i7b 0.658216 Wikramaratna_2020 Lorusso_2019, Liu_L_2020
9 Nishida_2019 Two cases of primary human parechovirus pneumonia in adults Nishida, Takashi; Ishiguro, Takashi; Takano, Kenji; Isono, Taisuke; Kobayashi, Yoichi; Shimizu, Yoshihiko; Takayanagi, Noboru 2019 2019-12-31 PMC N 10.1016/j.rmcr.2019.100949 wss75xdi 0.652044
10 Lau_S_2005 SARS Coronavirus Detection Methods Lau, Susanna K.P.; Che, Xiao-Yan; Woo, Patrick C.Y.; Wong, Beatrice H.L.; Cheng, Vincent C.C.; Woo, Gibson K.S.; Hung, Ivan F.N.; Poon, Rosana W.S.; Chan, Kwok-Hung; Peiris, J.S. Malik; Yuen, Kwok-Yung 2005 2005-07-23 PMC N PMC3371792 16022791.0 10.3201/eid1107.041045 qm3qfvry 0.632321 Xu_D_2005
11 Abedi_Kiasari_2008 Age-related pattern of KI and WU polyomavirus infection Abedi Kiasari, B.; Vallely, P.J.; Corless, C.E.; Al-Hammadi, M.; Klapper, P.E. 2008 2008-09-30 PMC N PMC7108349 18573691.0 10.1016/j.jcv.2008.05.003 q1a8uuvv 0.606932 Chieochansin_2010
12 Debiaggi_2012 Epidemiological, molecular and clinical features of Enterovirus 109 infection in children and in adult stem cell transplant recipients Debiaggi, Maurizia; Ceresola, Elisa Rita; Sampaolo, Michela; Alessandrino, Emilio Paolo; Brerra, Roberto; Piazza, Aurora; Clementi, Massimo; Canducci, Filippo 2012 2012-09-04 COMM-USE N PMC3477084 22947270.0 10.1186/1743-422x-9-183 dxv1kjvu 0.603468 Chieochansin_2010
13 Zlateva_2012 No novel coronaviruses identified in a large collection of human nasopharyngeal specimens using family-wide CODEHOP-based primers Zlateva, Kalina T.; Coenjaerts, Frank E. J.; Crusio, Kelly M.; Lammens, Christine; Leus, Frank; Viveen, Marco; Ieven, Margareta; Spaan, Willy J. M.; Claas, Eric C. J.; Gorbalenya, Alexander E. 2012 2012-09-28 PMC N PMC7087030 23053517.0 10.1007/s00705-012-1487-4 2dsesgof 0.579071 Chieochansin_2010
14 Soccal_2010 Upper and Lower Respiratory Tract Viral Infections and Acute Graft Rejection in Lung Transplant Recipients Soccal, P. M.; Aubert, J.-D.; Bridevaux, P.-O.; Garbino, J.; Y., Thomas; Rochat, T.; Rochat, T. S.; Meylan, P.; Tapparel, C.; Kaiser, L. 2010 2010-07-15 PMC N PMC7107821 20524853.0 10.1086/653529 mvgp6qfv 0.578990
15 de_Groot-Mijnes_2010 Identification of New Pathogens in the Intraocular Fluid of Patients With Uveitis de Groot-Mijnes, Jolanda D.F.; de Visser, Lenneke; Zuurveen, Stephanie; Martinus, Roaldy A.; Völker, René; ten Dam-van Loon, Ninette H.; de Boer, Joke H.; Postma, Gina; de Groot, Raoul J.; van Loon, Anton M.; Rothova, Aniki 2010 2010-11-30 PMC N PMC7093850 20691420.0 10.1016/j.ajo.2010.05.015 u0cpklsv 0.576166
16 Memish_2014 Respiratory Tract Samples, Viral Load, and Genome Fraction Yield in Patients With Middle East Respiratory Syndrome Memish, Ziad A.; Al-Tawfiq, Jaffar A.; Makhdoom, Hatem Q.; Assiri, Abdullah; Alhakeem, Raafat F.; Albarrak, Ali; Alsubaie, Sarah; Al-Rabeeah, Abdullah A.; Hajomar, Waleed H.; Hussain, Raheela; Kheyami, Ali M.; Almutairi, Abdullah; Azhar, Esam I.; Drosten, Christian; Watson, Simon J.; Kellam, Paul; Cotten, Matthew; Zumla, Alimuddin 2014 2014-11-15 PMC N PMC7107391 24837403.0 10.1093/infdis/jiu292 tictyo3f 0.570388 Flynn_2018
17 Bialasiewicz_2009 Merkel Cell Polyomavirus DNA in Respiratory Specimens from Children and Adults Bialasiewicz, Seweryn; Lambert, Stephen B.; Whiley, David M.; Nissen, Michael D.; Sloots, Theo P. 2009 2009-03-23 PMC N PMC2681122 19239774.0 10.3201/eid1503.081067 pkejb0a9 0.564089 Chieochansin_2010
18 Dare_2008 Screening Pneumonia Patients for Mimivirus Dare, Ryan K.; Chittaganpitch, Malinee; Erdman, Dean D. 2008 2008-03-23 PMC N PMC2570813 18325263.0 10.3201/eid1403.071027 e0ou9zjb 0.562754
19 van_Elden_2002 Polymerase Chain Reaction Is More Sensitive than Viral Culture and Antigen Testing for the Detection of Respiratory Viruses in Adults with Hematological Cancer and Pneumonia van Elden, Leontine J. R.; van Kraaij, Marian G. J.; Nijhuis, Monique; Hendriksen, Karin A. W.; Dekker, Ad W.; Rozenberg-Arska, Maja; van Loon, Anton M. 2002 2002-01-15 PMC N PMC7109912 11740705.0 10.1086/338238 yottboqs 0.557030
20 Prakash_2020 Human Parvovirus 4: A harmless bystander or a pathogen of severe acute respiratory illness Prakash, Shantanu; Shukla, Suruchi; Ramakrishna, Vangala; Mishra, Hricha; Bhagat, Amit K.; Jain, Amita 2020 2020-01-31 PMC N 31605808.0 10.1016/j.ijid.2019.10.001 2jsgn79e 0.552122 Chieochansin_2010
21 Lieberman_2010 Pooled nasopharyngeal and oropharyngeal samples for the identification of respiratory viruses in adults Lieberman, D.; Lieberman, D.; Shimoni, A.; Keren-Naus, A.; Steinberg, R.; Shemer-Avni, Y. 2010 2010-03-12 PMC N PMC7088032 20221890.0 10.1007/s10096-010-0903-5 nvy0lwt5 0.551865
22 Kols_2019 Comparison of phenotypic and genotypic diagnosis of acute human bocavirus 1 infection in children Kols, Nicola Isabelle; Aatola, Heli; Peltola, Ville; Xu, Man; Nora-Krukle, Zaiga; Hedman, Klaus; Zvirbliene, Aurelija; Toivola, Hanna; Vuorinen, Tytti; Koskinen, Juha M.; Bruning, Andrea H.L.; Christensen, Andreas; Söderlund-Venermo, Maria; Koskinen, Janne O. 2019 2019-11-30 PMC N PMC7106360 31521013.0 10.1016/j.jcv.2019.09.003 awr2tbj0 0.530768 Chieochansin_2010
23 Zhou_2005 The design and application of DNA chips for early detection of SARS-CoV from clinical samples Zhou, Yi-ming; Yang, Ren-quan; Tao, Sheng-ce; Li, Ze; Zhang, Qiong; Gao, Hua-fang; Zhang, Zhi-wei; Du, Jian-yu; Zhu, Pei-xuan; Ren, Li-li; Zhang, Liang; Wang, Dong; Guo, Lan; Wang, Yan-bin; Guo, Yong; Zhang, Yan; Zhao, Chuan-zan; Wang, Can; Jiang, Di; Liu, Yan-hua; Yang, Hua-wei; Rong, Li; Zhao, Yan-jun; An, Shuang; Li, Zhe; Fan, Xiao-dong; Wang, Jian-wei; Cheng, Yun; Liu, Ou; Zheng, Zhong; Zuo, Huan-cong; Shan, Quan-zhong; Ruan, Li; Lü, Zhan-xiu; Hung, Tao; Cheng, Jing 2005 2005-06-30 PMC N PMC7108259 15911427.0 10.1016/j.jcv.2004.10.019 uhrvwfyj 0.524307 van_Kruijssen_2006 Poon_2003, Xu_D_2005
24 Hirsilä_2001 Detection by Reverse Transcription–Polymerase Chain Reaction of Influenza C in Nasopharyngeal Secretions of Adults with a Common Cold Hirsilä, Maija; Kauppila, Jaana; Tuomaala, Katri; Grekula, Birgitta; Puhakka, Tuomo; Ruuskanen, Olli; Ziegler, Thedi 2001 2001-04-15 PMC N PMC7109944 11262210.0 10.1086/319675 1amcsgmj 0.519247 Pitkäranta_1998
25 Smits_2012 Calicivirus from Novel Recovirus Genogroup in Human Diarrhea, Bangladesh Smits, Saskia L.; Rahman, Mustafizur; Schapendonk, Claudia M.E.; van Leeuwen, Marije; Faruque, Abu S.G.; Haagmans, Bart L.; Endtz, Hubert P.; Osterhaus, Albert D.M.E. 2012 2012-07-23 PMC N PMC3376821 22709854.0 10.3201/eid1807.120344 4k8j7gi7 0.512026 Chieochansin_2010 Ouattara_2011
26 Cheng_2008 Human Bocavirus in Children Hospitalized for Acute Gastroenteritis: A Case-Control Study Cheng, Wei-xia; Jin, Yu; Duan, Zhao-jun; Xu, Zi-qian; Qi, Hong-mei; Zhang, Qing; Yu, Jie-mei; Zhu, Lin; Jin, Miao; Liu, Na; Cui, Shu-xian; Li, Hui-ying; Fang, Zhao-yin 2008 2008-07-15 PMC N PMC7107984 18532891.0 10.1086/589244 989ogvsj 0.511809 Chieochansin_2010
27 Woo_P_2010 Resequencing microarray for detection of human adenoviruses in patients with conjunctivitis Woo, Patrick C.Y.; Lau, Susanna K.P.; Choi, Garnet K.Y.; Fung, Hin-Tat; Shek, Kam-Chuen; Miao, Ji; Chan, Benedict Y.L.; Ng, Kenneth H.L.; Ngan, Antonio H.Y.; Ellis-Behnke, Rutledge; Que, Tak-Lun; Kam, Chak-Wah; Yuen, Kwok-Yung 2010 2010-03-31 PMC N 20071220.0 10.1016/j.jcv.2009.12.014 vvbwc4b5 0.484281 Chieochansin_2010
28 Pitkäranta_1998 Polymerase chain reaction–based detection of rhinovirus, respiratory syncytial virus, and coronavirus in otitis media with effusion Pitkäranta, Anne; Jero, Jussi; Arruda, Eurico; Virolainen, Anni; Hayden, Frederick G. 1998 1998-09-30 PMC N PMC7095025 9738723.0 10.1016/s0022-3476(98)70276-8 s0kpeqis 0.479723
29 quan_2020 No SARS-CoV-2 in expressed prostatic secretion of patients with coronavirus disease 2019: a descriptive multicentre study in China weihe quan; qingyou zheng; jinfei tian; jun chen; zhigang liu; xiangqiu chen; tao wu; ziliang ji; jinqi tang; hao chu; haijia xu; yong zhao 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.26.20044198 13bvssv1 0.478916 Xu_D_2005
30 Christensen_2013 Detection of Spliced mRNA from Human Bocavirus 1 in Clinical Samples from Children with Respiratory Tract Infections Christensen, Andreas; Døllner, Henrik; Skanke, Lars Høsøien; Krokstad, Sidsel; Moe, Nina; Nordbø, Svein Arne 2013 2013-04-23 PMC N PMC3647721 23628409.0 10.3201/eid1904.121775 xad8hust 0.476694 Chieochansin_2010
31 Leekha_2013 Viral detection using a multiplex polymerase chain reaction–based assay in outpatients with upper respiratory infection Leekha, Surbhi; Irish, Cole L.; Schneider, Susan K.; Fernholz, Emily C.; Espy, Mark J.; Cunningham, Scott A.; Patel, Robin; Juhn, Young J.; Pritt, Bobbi; Smith, Thomas F.; Sampathkumar, Priya 2013 2013-02-28 PMC N PMC7127585 23182565.0 10.1016/j.diagmicrobio.2012.10.016 jgvqqeg3 0.470726
32 Pratelli_2000 Diagnosis of canine coronavirus infection using nested-PCR Pratelli, Annamaria; Buonavoglia, Domenico; Martella, Vito; Tempesta, Maria; Lavazza, Antonio; Buonavoglia, Canio 2000 2000-01-31 PMC N PMC7119627 10644090.0 10.1016/s0166-0934(99)00134-2 o3qf75ha 0.462245 Lorusso_2019
33 Al_Hosani_2016 Response to Emergence of Middle East Respiratory Syndrome Coronavirus, Abu Dhabi, United Arab Emirates, 2013–2014 Al Hosani, Farida Ismail; Pringle, Kimberly; Al Mulla, Mariam; Kim, Lindsay; Pham, Huong; Alami, Negar N.; Khudhair, Ahmed; Hall, Aron J.; Aden, Bashir; El Saleh, Feda; Al Dhaheri, Wafa; Al Bandar, Zyad; Bunga, Sudhir; Abou Elkheir, Kheir; Tao, Ying; Hunter, Jennifer C.; Nguyen, Duc; Turner, Andrew; Pradeep, Krishna; Sasse, Jurgen; Weber, Stefan; Tong, Suxiang; Whitaker, Brett L.; Haynes, Lia M.; Curns, Aaron; Gerber, Susan I. 2016 2016-07-23 PMC N PMC4918155 27314227.0 10.3201/eid2207.160040 s3m54teu 0.458932 Abroug_2014
34 Vargas_2016 Pilot study of participant-collected nasal swabs for acute respiratory infections in a low-income, urban population Vargas, Celibell Y; Wang, Liqun; Castellanos de Belliard, Yaritza; Morban, Maria; Diaz, Hilbania; Larson, Elaine L; LaRussa, Philip; Saiman, Lisa; Stockwell, Melissa S 2016 2016-01-06 NONCOMM N PMC4708198 26793005.0 10.2147/clep.s95847 66r1k03d 0.455647 Emerson_2013
35 Carr_2005 Human metapneumovirus-associated respiratory tract infections in the Republic of Ireland during the influenza season of 2003–2004 Carr, M.J.; McCormack, G.P.; Crowley, B. 2005 2005-05-31 PMC N PMC7128998 15819862.0 10.1111/j.1469-0691.2005.01129.x w1dpftbj 0.454409 Chieochansin_2010
36 Nascimento‐Carvalho_2017 Serologically diagnosed acute human bocavirus 1 infection in childhood community‐acquired pneumonia Nascimento‐Carvalho, Amanda C.; Vilas‐Boas, Ana‐Luisa; Fontoura, Maria‐Socorro H.; Xu, Man; Vuorinen, Tytti; Söderlund‐Venermo, Maria; Ruuskanen, Olli; Nascimento‐Carvalho, Cristiana M. 2017 2017-10-13 PMC N PMC7167785 29028159.0 10.1002/ppul.23891 mf9elqc9 0.451214
37 Park_2018 Replicative virus shedding in the respiratory tract of patients with Middle East respiratory syndrome coronavirus infection Park, Wan Beom; Poon, Leo L.M.; Choi, Su-Jin; Choe, Pyoeng Gyun; Song, Kyoung-Ho; Bang, Ji Hwan; Kim, Eu Suk; Kim, Hong Bin; Park, Sang Won; Kim, Nam Joong; Peiris, Malik; Oh, Myoung-don 2018 2018-07-31 PMC N PMC7110884 29753119.0 10.1016/j.ijid.2018.05.003 976qxja2 0.448879 Memish_2014, Kossyvakis_2015
38 Jeong_2014 Comparison of sputum and nasopharyngeal swabs for detection of respiratory viruses Jeong, Ji Hun; Kim, Kyung Hee; Jeong, Sung Hwan; Park, Jeong Woong; Lee, Sang Min; Seo, Yiel Hea 2014 2014-05-06 PMC N PMC7166652 24797344.0 10.1002/jmv.23937 12x5cc8i 0.446667 Flynn_2018
39 Dessau_2009 Coronaviruses in spinal fluid of patients with acute monosymptomatic optic neuritis Dessau, R. B.; Lisby, G.; Frederiksen, J. L. 2009 2009-01-29 PMC N PMC7159732 10442448.0 10.1111/j.1600-0404.1999.tb01043.x 7pxkhgbq 0.444409 Chieochansin_2010
40 Zhou_2014 Single detection of human bocavirus 1 with a high viral load in severe respiratory tract infections in previously healthy children Zhou, Lili; Zheng, Shouyan; Xiao, Qiuyan; Ren, Luo; Xie, Xiaohong; Luo, Jian; Wang, Lijia; Huang, Ailong; Liu, Wei; Liu, Enmei 2014 2014-07-30 COMM-USE N PMC4125703 25078257.0 10.1186/1471-2334-14-424 gfam3jgy 0.439301 Chieochansin_2010
41 Li_L_2013 Comparison among nasopharyngeal swab, nasal wash, and oropharyngeal swab for respiratory virus detection in adults with acute pharyngitis Li, Li; Chen, Qiao-Yan; Li, Yun-Ying; Wang, Yan-Fang; Yang, Zi-Feng; Zhong, Nan-Shan 2013 2013-06-20 COMM-USE N PMC3698019 23786598.0 10.1186/1471-2334-13-281 pnvjqeyu 0.438002
42 Kang_2008 Prevalence of feline herpesvirus 1, feline calicivirus and Chlamydophila felis in clinically normal cats at a Korean animal shelter Kang, Byeong-Teck; Park, Hee-Myung 2008 2008-06-30 PMC N PMC2839100 18487944.0 10.4142/jvs.2008.9.2.207 hjj12rre 0.436734 Sharif_2009
43 Bergallo_2016 Molecular detection of human parechovirus in under-Five-Year-Old Children with gastroenteritis Bergallo, Massimiliano; Galliano, Ilaria; Montanari, Paola; Rosa Brusin, Martina; Gabiano, Clara 2016 2016-12-31 PMC N PMC7106367 27816019.0 10.1016/j.jcv.2016.10.001 bmc8w3cn 0.436441 van_Kruijssen_2006
44 Mao_Z_2020 The enlightenment from two cases of asymptomatic infection with SARS-CoV-2: is it safe after 14 days of isolation? Mao, Zhi-Qun; Wan, Ren; He, Li-Yi; Hu, Yue-Chun; Chen, Wei 2020 2020-04-03 PMC N 10.1016/j.ijid.2020.03.041 h3imi4tk 0.435014 Ouattara_2011, Xu_D_2005
45 To_K_2017 Additional molecular testing of saliva specimens improves the detection of respiratory viruses To, Kelvin KW; Lu, Lu; Yip, Cyril CY; Poon, Rosana WS; Fung, Ami MY; Cheng, Andrew; Lui, Daniel HK; Ho, Deborah TY; Hung, Ivan FN; Chan, Kwok-Hung; Yuen, Kwok-Yung 2017 2017-06-07 COMM-USE Y PMC5520312 28588283.0 10.1038/emi.2017.35 9zhmmvdg 0.433406 van_Kruijssen_2006
46 Deng_2012 High Viral Load of Human Bocavirus Correlates with Duration of Wheezing in Children with Severe Lower Respiratory Tract Infection Deng, Yu; Gu, Xiaoyang; Zhao, Xiaodong; Luo, Jian; Luo, Zhengxiu; Wang, Lijia; Fu, Zhou; Yang, Xiqiang; Liu, Enmei 2012 2012-03-30 COMM-USE N PMC3316689 22479609.0 10.1371/journal.pone.0034353 7u235c96 0.432352
47 Neske_2009 Detection of WU polyomavirus DNA by real-time PCR in nasopharyngeal aspirates, serum, and stool samples Neske, Florian; Blessing, Kerstin; Pröttel, Anika; Ullrich, Franziska; Kreth, Hans Wolfgang; Weissbrich, Benedikt 2009 2009-02-28 PMC N 19157970.0 10.1016/j.jcv.2008.12.004 3lzh1yy2 0.430898
48 van_de_Pol_2010 Impact of PCR for respiratory viruses on antibiotic use: Theory and practice van de Pol, Alma C.; Wolfs, Tom F.W.; Tacke, Carline E.A.; Uiterwaal, Cuno S.P.; Forster, Johannes; van Loon, Anton M.; Kimpen, Jan L.L.; Rossen, John W.A.; Jansen, Nicolaas J.G. 2010 2010-12-30 PMC N PMC7167622 21194137.0 10.1002/ppul.21385 sqpkw5nt 0.424402
49 Memish_2014 Middle East respiratory syndrome coronavirus (MERS-CoV) viral shedding in the respiratory tract: an observational analysis with infection control implications Memish, Ziad A.; Assiri, Abdullah M.; Al-Tawfiq, Jaffar A. 2014 2014-12-31 PMC N PMC7110713 25448335.0 10.1016/j.ijid.2014.10.002 3dq2shp5 0.418965 Alfaraj_2019
50 Risku_2012 Human bocavirus types 1, 2 and 3 in acute gastroenteritis of childhood Risku, Minna; Kätkä, Minna; Lappalainen, Suvi; Räsänen, Sirpa; Vesikari, Timo 2012 2012-05-24 PMC N PMC7159669 22568605.0 10.1111/j.1651-2227.2012.02727.x lhi0hcki 0.416364 Chieochansin_2010
51 Ortega_2017 Identification of co-infection by rotavirus and parvovirus in dogs with gastroenteritis in Mexico Ortega, Ariadna Flores; Martínez-Castañeda, José Simón; Bautista-Gómez, Linda G.; Muñoz, Raúl Fajardo; Hernández, Israel Quijano 2017 2017-06-24 None N PMC5628314 28716388.0 10.1016/j.bjm.2017.03.008 rhsne157 0.415594
52 Esper_2010 Human coronaviruses are uncommon in patients with gastrointestinal illness Esper, Frank; Ou, Zhen; Huang, Yung T. 2010 2010-06-30 None N PMC2864800 20362494.0 10.1016/j.jcv.2010.03.007 4ni9d2ss 0.412331
53 Hase_2020 A case of imported COVID-19 diagnosed by PCR-positive lower respiratory specimen but with PCR-negative throat swabs Hase, Ryota; Kurita, Takashi; Muranaka, Emiri; Sasazawa, Hiroki; Mito, Haruki; Yano, Yudai 2020 2020-04-02 PMC N PMC7157961 32238024.0 10.1080/23744235.2020.1744711 ydlix2o7 0.407572 Lee_N_2020
54 Nawaz_2012 Human Bocaviruses Are Not Significantly Associated with Gastroenteritis: Results of Retesting Archive DNA from a Case Control Study in the UK Nawaz, Sameena; Allen, David J.; Aladin, Farah; Gallimore, Christopher; Iturriza-Gómara, Miren 2012 2012-07-24 COMM-USE N PMC3404102 22848470.0 10.1371/journal.pone.0041346 leedutqo 0.404492 Chieochansin_2010 Cheng_2008
55 van_Elden_2008 Enhanced severity of virus associated lower respiratory tract disease in asthma patients may not be associated with delayed viral clearance and increased viral load in the upper respiratory tract van Elden, Leontine J.R.; Sachs, Alfred P.E.; van Loon, Anton M.; Haarman, Monique; van de Vijver, David A.; Kimman, Tjeerd G.; Zuithoff, Peter; Schipper, Pauline J.; Verheij, Theo J.M.; Nijhuis, Monique 2008 2008-02-29 PMC N 18096430.0 10.1016/j.jcv.2007.10.028 o8vaciuj 0.403685
56 Öhrmalm_2010 Flocked nasal swab versus nasopharyngeal aspirate for detection of respiratory tract viruses in immunocompromised adults: a matched comparative study Öhrmalm, Lars; Wong, Michelle; Rotzén-Östlund, Maria; Norbeck, Oscar; Broliden, Kristina; Tolfvenstam, Thomas 2010 2010-11-26 COMM-USE N PMC3001728 21110854.0 10.1186/1471-2334-10-340 ly8b07no 0.402881 Wikramaratna_2020, Chieochansin_2010
57 Sanz_2019 Evaluation of equine coronavirus fecal shedding among hospitalized horses Sanz, Macarena G.; Kwon, SoYoung; Pusterla, Nicola; Gold, Jenifer R.; Bain, Fairfield; Evermann, Jim 2019 2019-02-20 NONCOMM N PMC6430884 30788861.0 10.1111/jvim.15449 6zomiz4g 0.401605 Flynn_2018
58 Shimizu_2005 Human Coronavirus NL63 Is Not Detected in the Respiratory Tracts of Children with Acute Kawasaki Disease Shimizu, Chisato; Shike, Hiroko; Baker, Susan C.; Garcia, Francesca; van der Hoek, Lia; Kuijpers, Taco W.; Reed, Sharon L.; Rowley, Anne H.; Shulman, Stanford T.; Talbot, Helen K. B.; Williams, John V.; Burns, Jane C. 2005 2005-11-15 PMC N PMC2888540 16235175.0 10.1086/497170 jnbq29c8 0.400939 Ouattara_2011
59 Spuesens_2013 Carriage of Mycoplasma pneumoniae in the Upper Respiratory Tract of Symptomatic and Asymptomatic Children: An Observational Study Spuesens, Emiel B. M.; Fraaij, Pieter L. A.; Visser, Eline G.; Hoogenboezem, Theo; Hop, Wim C. J.; van Adrichem, Léon N. A.; Weber, Frank; Moll, Henriette A.; Broekman, Berth; Berger, Marjolein Y.; van Rijsoort-Vos, Tineke; van Belkum, Alex; Schutten, Martin; Pas, Suzan D.; Osterhaus, Albert D. M. E.; Hartwig, Nico G.; Vink, Cornelis; van Rossum, Annemarie M. C. 2013 2013-05-14 COMM-USE N PMC3653782 23690754.0 10.1371/journal.pmed.1001444 d6awwygy 0.400239
60 Chen_2012 Real-Time Quantitative Fluorescent Reverse Transcriptase-PCR for Detection of Severe Acute Respiratory Syndrome-Associated Coronavirus RNA Chen, Weijun; Xu, Zuyuan; Mu, Jingsong; He, Bo; Yang, Ling; Lin, Lin; Meng, Shufang; Mu, Feng; Gan, Haixue; Huang, Shengyong; Wen, Jie; Fang, Jianqiu; Wang, Jian 2012 2012-12-01 PMC N PMC7100218 15887978.0 10.1007/bf03260067 8ym56mpv 0.397711 Poon_2003
61 Woelfel_2020 Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster Roman Woelfel; Victor Max Corman; Wolfgang Guggemos; Michael Seilmaier; Sabine Zange; Marcel A Mueller; Daniela Niemeyer; Patrick Vollmar; Camilla Rothe; Michael Hoelscher; Tobias Bleicker; Sebastian Bruenink; Julia Schneider; Rosina Ehmann; Katrin Zwirglmaier; Christian Drosten; Clemens Wendtner 2020 2020-03-08 BioRxiv Y 10.1101/2020.03.05.20030502 gunn55f9 0.393662
62 Poon_2003 Early diagnosis of SARS Coronavirus infection by real time RT-PCR Poon, Leo L.M.; Chan, Kwok Hung; Wong, On Kei; Yam, Wing Cheong; Yuen, Kwok Yung; Guan, Yi; Lo, Y.M.Dennis; Peiris, Joseph S.M. 2003 2003-12-31 PMC Y PMC7129783 14522060.0 10.1016/j.jcv.2003.08.004 86el3qwn 0.389609
63 Gangell_2014 Feasibility of parental collected nasal swabs for virus detection in young children with cystic fibrosis Gangell, C.L.; Shackleton, C.; Poreddy, S.; Kappers, J.; Gaydon, J.E.; Sloots, T.P.; Stick, S.M.; Ranganathan, S.C.; Sly, P.D. 2014 2014-12-31 PMC N PMC7105194 24637444.0 10.1016/j.jcf.2014.02.009 nrc1gyvo 0.385423 Ma_X_2020
64 Azadeh_2018 Comparison of Respiratory Pathogen Detection in Upper versus Lower Respiratory Tract Samples Using the BioFire FilmArray Respiratory Panel in the Immunocompromised Host Azadeh, Natalya; Sakata, Kenneth K.; Saeed, Ali; Mullon, John J.; Grys, Thomas E.; Limper, Andrew H.; Binnicker, Matthew J. 2018 2018-04-05 COMM-USE N PMC5907482 29849830.0 10.1155/2018/2685723 k676puoq 0.378283 DeByle_2012
65 Medema_2020 Presence of SARS-Coronavirus-2 in sewage Gertjan Medema; Leo Heijnen; Goffe Elsinga; Ronald Italiaander; Anke Brouwer 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.29.20045880 fb62dwga 0.377594 Xu_D_2005
66 Gerna_2009 Correlation of rhinovirus load in the respiratory tract and clinical symptoms in hospitalized immunocompetent and immunocompromised patients Gerna, G.; Piralla, A.; Rovida, F.; Rognoni, V.; Marchi, A.; Locatelli, F.; Meloni, F. 2009 2009-06-23 PMC N PMC7159321 19551831.0 10.1002/jmv.21548 igeyiw0t 0.377037
67 Minodier_2019 Risk factors for seasonal influenza virus detection in stools of patients consulting in general practice for acute respiratory infections in France, 2014‐2016 Minodier, Laëtitia; Masse, Shirley; Capai, Lisandru; Blanchon, Thierry; Ceccaldi, Pierre‐Emmanuel; van der Werf, Sylvie; Hanslik, Thomas; Charrel, Remi; Falchi, Alessandra 2019 2019-05-10 COMM-USE N PMC6586184 29144593.0 10.1111/irv.12523 blubu1pw 0.375493
68 Chen_2004 Serology of Severe Acute Respiratory Syndrome: Implications for Surveillance and Outcome Chen, Xinchun; Zhou, Boping; Li, Meizhong; Liang, Xiaorong; Wang, Huosheng; Yang, Guilin; Wang, Hui; Le, Xiaohua 2004 2004-04-01 PMC N PMC7110198 15031782.0 10.1086/380397 nrtrhq1f 0.373739 Xu_D_2005
69 lechien_2020 Objective olfactory testing in patients presenting with sudden onset olfactory dysfunction as the first manifestation of confirmed COVID-19 infection jerome lechien; pierre cabaraux; carlos chiesa-estomba; mohammad khalife; jan plzak; stephane hans; delphine martiny; christian Henriquez; Claire hopkins; sven saussez 2020 2020-04-18 BioRxiv Y 10.1101/2020.04.15.20066472 l2cc6wd8 0.373216
70 Qin_X_2016 Comparison of molecular detection methods for pertussis in children during a state-wide outbreak Qin, X.; Zerr, D. M.; Kronman, M. P.; Adler, A. L.; Berry, J. E.; Rich, S.; Buccat, A. M.; Xu, M.; Englund, J. A. 2016 2016-04-27 COMM-USE N PMC4847268 27121506.0 10.1186/s12941-016-0142-4 aqeg8iq8 0.364994 van_Kruijssen_2006
71 Christensen_2010 Human bocavirus in children: Mono-detection, high viral load and viraemia are associated with respiratory tract infection Christensen, Andreas; Nordbø, Svein Arne; Krokstad, Sidsel; Rognlien, Anne Gro Wesenberg; Døllner, Henrik 2010 2010-11-30 PMC N PMC7108378 20833582.0 10.1016/j.jcv.2010.07.016 g2rjjq48 0.364334 Chieochansin_2010
72 Kim_S_2016 Viral RNA in Blood as Indicator of Severe Outcome in Middle East Respiratory Syndrome Coronavirus Infection Kim, So Yeon; Park, Sun Jae; Cho, Sook Young; Cha, Ran-hui; Jee, Hyeon-Gun; Kim, Gayeon; Shin, Hyoung-Shik; Kim, Yeonjae; Jung, Yu Mi; Yang, Jeong-Sun; Kim, Sung Soon; Cho, Sung Im; Kim, Man Jin; Lee, Jee-Soo; Lee, Seung Jun; Seo, Soo Hyun; Park, Sung Sup; Seong, Moon-Woo 2016 2016-10-23 PMC N PMC5038397 27479636.0 10.3201/eid2210.160218 wuf3s8m0 0.362014 Abroug_2014
73 Zhang_2020 Virus shedding patterns in nasopharyngeal and fecal specimens of COVID-19 patients Ning Zhang; Yuhuan Gong; Fanping Meng; Yuhai Bi; Penghui Yang; Fusheng Wang 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.28.20043059 1fyag5x3 0.361175 Chan_2004, Chan_2004 Leong_2004, Xu_D_2005
74 Preiksaitis_2015 A patient self-collection method for longitudinal monitoring of respiratory virus infection in solid organ transplant recipients Preiksaitis, Carl M.; Kuypers, Jane M.; Fisher, Cynthia E.; Campbell, Angela P.; Jerome, Keith R.; Huang, Meei-Li; Boeckh, Michael; Limaye, Ajit P. 2015 2015-01-31 None N PMC4629250 25464966.0 10.1016/j.jcv.2014.10.021 f7lxlnwi 0.357780
75 SUZUKI_2014 Group B Betacoronavirus in Rhinolophid Bats, Japan SUZUKI, Jin; SATO, Ryota; KOBAYASHI, Tomoya; AOI, Toshiki; HARASAWA, Ryô 2014 2014-05-27 NONCOMM N PMC4197156 24871548.0 10.1292/jvms.14-0012 dytfoyiz 0.354840 Chieochansin_2010
76 Piralla_2018 Cellular DNA quantification in respiratory samples for the normalization of viral load: a real need? Piralla, Antonio; Giardina, Federica; Rovida, Francesca; Campanini, Giulia; Baldanti, Fausto 2018 2018-10-31 PMC N 30103163.0 10.1016/j.jcv.2018.07.010 kboqa9ci 0.351487 Granados_2012, Chakrabarti_2009
77 Dhiman_2012 Effectiveness of Patient-Collected Swabs for Influenza Testing Dhiman, Neelam; Miller, Rita M.; Finley, Janet L.; Sztajnkrycer, Matthew D.; Nestler, David M.; Boggust, Andy J.; Jenkins, Sarah M.; Smith, Thomas F.; Wilson, John W.; Cockerill, Franklin R.; Pritt, Bobbi S. 2012 2012-06-30 None N PMC3538476 22551906.0 10.1016/j.mayocp.2012.02.011 0h0jcqe6 0.350525 DeByle_2012
78 Gagneur_2008 Materno-fetal transmission of human coronaviruses: a prospective pilot study Gagneur, A.; Dirson, E.; Audebert, S.; Vallet, S.; Legrand-Quillien, M. C.; Laurent, Y.; Collet, M.; Sizun, J.; Oger, E.; Payan, C. 2008 2008-03-29 PMC N PMC7087967 18373106.0 10.1007/s10096-008-0505-7 f8dahf0a 0.349318
79 Fisher_2019 Evaluating addition of self-collected throat swabs to nasal swabs for respiratory virus detection Fisher, Cynthia E.; Boeckh, Michael; Jerome, Keith R.; Englund, Janet; Kuypers, Jane 2019 2019-06-30 PMC N PMC6587583 30978619.0 10.1016/j.jcv.2019.04.001 xpog0gpa 0.348336 DeByle_2012, Chan_2004, Ali_M_2015, Leekha_2013 Emerson_2013, Robinson_2008, Larios_2011
80 Ku_D_2016 Ability of device to collect bacteria from cough aerosols generated by adults with cystic fibrosis Ku, David N.; Ku, Sarah K.; Helfman, Beth; McCarty, Nael A.; Wolff, Bernard J.; Winchell, Jonas M.; Anderson, Larry J. 2016 2016-08-05 COMM-USE N PMC5054809 27781088.0 10.12688/f1000research.9251.1 au5ezq7z 0.348187
81 Esposito_2013 Impact of rhinovirus nasopharyngeal viral load and viremia on severity of respiratory infections in children Esposito, S.; Daleno, C.; Scala, A.; Castellazzi, L.; Terranova, L.; Sferrazza Papa, S.; Longo, M. R.; Pelucchi, C.; Principi, N. 2013 2013-07-28 PMC N PMC7088146 23893065.0 10.1007/s10096-013-1926-5 wb1enp2b 0.346343 Granados_2012
82 Eis-Hübinger_1989 Opportunistic Infections with Coronavirus-Like Particles in Patients Infected with the Human Immunodeficiency Virus? Eis-Hübinger, A.M.; Stifter, G.; Schneweis, K.E. 1989 1989-09-30 PMC N PMC7135704 2553042.0 10.1016/s0934-8840(89)80034-9 el7xql0y 0.345972 Chieochansin_2010
83 Van_Driessche_2017 A Deep Nasopharyngeal Swab Versus Nonendoscopic Bronchoalveolar Lavage for Isolation of Bacterial Pathogens from Preweaned Calves With Respiratory Disease Van Driessche, L.; Valgaeren, B.R.; Gille, L.; Boyen, F.; Ducatelle, R.; Haesebrouck, F.; Deprez, P.; Pardon, B. 2017 2017-04-19 NONCOMM N PMC5435039 28425146.0 10.1111/jvim.14668 elzhww5a 0.345648 Ogawa_2019, Wikramaratna_2020
84 Gu_L_2016 Sustained Viremia and High Viral Load in Respiratory Tract Secretions Are Predictors for Death in Immunocompetent Adults with Adenovirus Pneumonia Gu, Li; Qu, Jiuxin; Sun, Bing; Yu, Xiaomin; Li, Hui; Cao, Bin 2016 2016-08-17 COMM-USE N PMC4988761 27532864.0 10.1371/journal.pone.0160777 mwy3t1ny 0.345148
85 Song_2015 Viral Shedding and Environmental Cleaning in Middle East Respiratory Syndrome Coronavirus Infection Song, Joon Young; Cheong, Hee Jin; Choi, Min Joo; Jeon, Ji Ho; Kang, Seong Hee; Jeong, Eun Ju; Yoon, Jin Gu; Lee, Saem Na; Kim, Sung Ran; Noh, Ji Yun; Kim, Woo Joo 2015 2015-12-30 NONCOMM N PMC4716277 26788409.0 10.3947/ic.2015.47.4.252 x11dr866 0.342935 Bin_S_2016
86 Lupo_2016 Fatal case of acute gastroenteritis with multiple viral coinfections Lupo, Julien; Morel-Baccard, Christine; Michard-Lenoir, Anne-Pascale; Germi, Raphaële; Pothier, Pierre; Ambert-Balay, Katia; Morand, Patrice 2016 2016-01-31 PMC N PMC7129220 26655270.0 10.1016/j.jcv.2015.11.026 y6z2jprq 0.341932 van_Kruijssen_2006 Ouattara_2011
87 Denis_2018 Evaluation of Two Commercial Real-Time PCR Kits for Aspergillus DNA Detection in Bronchoalveolar Lavage Fluid in Patients with Invasive Pulmonary Aspergillosis Denis, Julie; Forouzanfar, Faezeh; Herbrecht, Raoul; Toussaint, Elise; Kessler, Romain; Sabou, Marcela; Candolfi, Ermanno; Letsher-Bru, Valérie 2018 2018-05-31 PMC N 29471112.0 10.1016/j.jmoldx.2017.12.005 uly2uarp 0.340567 van_Kruijssen_2006
88 Liang_2004 Laboratory Diagnosis of Four Recent Sporadic Cases of Community-acquired SARS, Guangdong Province, China Liang, Guodong; Chen, Qiuxia; Xu, Jianguo; Liu, Yufei; Lim, Wilina; Peiris, J.S.M.; Anderson, Larry J.; Ruan, Li; Li, Hui; Kan, Biao; Di, Biao; Cheng, Peter; Chan, K.H.; Erdman, Dean D.; Gu, Shuyan; Yan, Xinge; Liang, Weili; Zhou, Duanhua; Haynes, Lia; Duan, Shumin; Zhang, Xin; Zheng, Han; Gao, Yang; Tong, Suxiang; Li, Dexin; Fang, Ling; Qin, Pengzhe; Xu, Wenbo 2004 2004-10-23 PMC N PMC3323270 15504263.0 10.3201/eid1010.040445 xn0n2t1m 0.339399 Xu_D_2005
89 Paloniemi_2015 Commonly circulating human coronaviruses do not have a significant role in the etiology of gastrointestinal infections in hospitalized children Paloniemi, Minna; Lappalainen, Suvi; Vesikari, Timo 2015 2015-01-31 PMC N PMC7106540 25464968.0 10.1016/j.jcv.2014.10.017 rufsbo10 0.338656
90 Cordey_2019 Detection of dicistroviruses RNA in blood of febrile Tanzanian children Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; Pérez-Rodriguez, Francisco J.; Keitel, Kristina; Vieille, Gael; Samaka, Josephine; Mlaganile, Tarsis; Kagoro, Frank; Boillat-Blanco, Noémie; Mbarack, Zainab; Docquier, Mylène; Brito, Francisco; Eibach, Daniel; May, Jürgen; Sothmann, Peter; Aldrich, Cassandra; Lusingu, John; Tapparel, Caroline; D’Acremont, Valérie; Kaiser, Laurent 2019 2019-04-19 COMM-USE N PMC6493270 30999808.0 10.1080/22221751.2019.1603791 k032ikww 0.337436 Chieochansin_2010
91 Chan_2004 Detection of SARS Coronavirus in Patients with Suspected SARS Chan, Kwok H.; Poon, Leo L.L.M.; Cheng, V.C.C.; Guan, Yi; Hung, I.F.N.; Kong, James; Yam, Loretta Y.C.; Seto, Wing H.; Yuen, Kwok Y.; Peiris, Joseph S. Malik 2004 2004-02-23 PMC N PMC3322905 15030700.0 10.3201/eid1002.030610 5148p1nx 0.334727 Xu_D_2005, Leong_2004
92 Guery_2013 Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: a report of nosocomial transmission Guery, Benoit; Poissy, Julien; el Mansouf, Loubna; Séjourné, Caroline; Ettahar, Nicolas; Lemaire, Xavier; Vuotto, Fanny; Goffard, Anne; Behillil, Sylvie; Enouf, Vincent; Caro, Valérie; Mailles, Alexandra; Che, Didier; Manuguerra, Jean-Claude; Mathieu, Daniel; Fontanet, Arnaud; van der Werf, Sylvie 2013 2013-07-05 PMC Y PMC7159298 23727167.0 10.1016/s0140-6736(13)60982-4 4k8306w0 0.333926 Lescure_2020
93 Schjelderup_Nilsen_2019 Human adenovirus in nasopharyngeal and blood samples from children with and without respiratory tract infections Schjelderup Nilsen, Hans-Johnny; Nordbø, Svein Arne; Krokstad, Sidsel; Døllner, Henrik; Christensen, Andreas 2019 2019-02-28 PMC N PMC7106418 30594701.0 10.1016/j.jcv.2018.12.005 ky4g47c1 0.332433 Chieochansin_2010
94 Gupta_2020 Persistent viral shedding of SARS-CoV-2 in faeces - a rapid review Sunnia Gupta; Jody Parker; Sunil Dolwani; Stephanie Smits; Jonathan Underwood 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.17.20069526 we9kzreh 0.332322
95 Edridge_2019 Viral Metagenomics on Cerebrospinal Fluid Edridge, Arthur W. D.; Deijs, Martin; van Zeggeren, Ingeborg E.; Kinsella, Cormac M.; Jebbink, Maarten F.; Bakker, Margreet; van de Beek, Diederik; Brouwer, Matthijs C.; van der Hoek, Lia 2019 2019-04-30 COMM-USE N PMC6562652 31052348.0 10.3390/genes10050332 8hzrv06m 0.332156
96 Leung_2003 Enteric involvement of severe acute respiratory syndrome-associated coronavirus infection 1 1 The authors thank Man-yee Yung, Sara Fung, Dr. Bonnie Kwan, and Dr. Thomas Li for their help in retrieving patient information. Leung, Wai K; To, Ka-fai; Chan, Paul K.S; Chan, Henry L.Y; Wu, Alan K.L; Lee, Nelson; Yuen, Kwok Y; Sung, Joseph J.Y 2003 2003-10-31 PMC Y PMC7126982 14517783.0 10.1016/j.gastro.2003.08.001 a8l7yvwv 0.330162 Xu_D_2005
97 Jevšnik_2013 Detection of human coronaviruses in simultaneously collected stool samples and nasopharyngeal swabs from hospitalized children with acute gastroenteritis Jevšnik, Monika; Steyer, Andrej; Zrim, Tamara; Pokorn, Marko; Mrvič, Tatjana; Grosek, Štefan; Strle, Franc; Lusa, Lara; Petrovec, Miroslav 2013 2013-02-05 COMM-USE N PMC3610273 23379823.0 10.1186/1743-422x-10-46 yrqpq9cf 0.329250
98 Tam_C_2018 Association between semi-quantitative microbial load and respiratory symptoms among Thai military recruits: a prospective cohort study Tam, Clarence C.; Offeddu, Vittoria; Anderson, Kathryn B.; Weg, Alden L.; Macareo, Louis R.; Ellison, Damon W.; Rangsin, Ram; Fernandez, Stefan; Gibbons, Robert V.; Yoon, In-Kyu; Simasathien, Sriluck 2018 2018-09-14 COMM-USE N PMC6137728 30217168.0 10.1186/s12879-018-3358-4 3esrg1jw 0.325969 van_Kruijssen_2006
99 Ouattara_2011 Novel Human Reovirus Isolated from Children with Acute Necrotizing Encephalopathy Ouattara, Louise A.; Barin, Francis; Barthez, Marie Anne; Bonnaud, Bertrand; Roingeard, Philippe; Goudeau, Alain; Castelnau, Pierre; Vernet, Guy; Paranhos-Baccalà, Gláucia; Komurian-Pradel, Florence 2011 2011-08-23 PMC N PMC3381585 21801621.0 10.3201/eid1708.101528 h4matthe 0.320656
100 He_Z_2007 Using patient-collected clinical samples and sera to detect and quantify the severe acute respiratory syndrome coronavirus (SARS-CoV) He, Zhongping; Zhuang, Hui; Zhao, Chunhui; Dong, Qingming; Peng, Guoai; Dwyer, Dominic E 2007 2007-03-27 COMM-USE N PMC1851004 17386116.0 10.1186/1743-422x-4-32 zf8jbhdl 0.320516 Xu_D_2005, Leong_2004, Chan_2004
101 Vanspauwen_2013 Mimivirus is not a frequent cause of ventilator‐associated pneumonia in critically ill patients Vanspauwen, M.J.; Schnabel, R.M.; Bruggeman, C.A.; Drent, M.; van Mook, W.N.K.A; Bergmans, D.C.J.J.; Linssen, C.F.M. 2013 2013-07-16 PMC N PMC7166740 23861144.0 10.1002/jmv.23655 2fsk7zky 0.320125 Nishida_2019
102 Dowell_2004 Severe Acute Respiratory Syndrome Coronavirus on Hospital Surfaces Dowell, Scott F.; Simmerman, James M.; Erdman, Dean D.; Wu, Jiunn-Shyan Julian; Chaovavanich, Achara; Javadi, Massoud; Yang, Jyh-Yuan; Anderson, Larry J.; Tong, Suxiang; Ho, Mei Shang 2004 2004-09-01 PMC N PMC7107915 15356778.0 10.1086/422652 22yam3my 0.319555 Flynn_2018 Leong_2004
103 DeByle_2012 Comparison of nasopharyngeal flocked swabs and nasopharyngeal wash collection methods for respiratory virus detection in hospitalized children using real-time polymerase chain reaction DeByle, Carolynn; Bulkow, Lisa; Miernyk, Karen; Chikoyak, Lori; Hummel, Kimberlee Boyd; Hennessy, Thomas; Singleton, Rosalyn 2012 2012-10-31 None N PMC4655598 22728277.0 10.1016/j.jviromet.2012.06.009 9kpr2muk 0.319361
104 Chang_2006 Lack of Association between Infection with a Novel Human Coronavirus (HCoV), HCoV-NH, and Kawasaki Disease in Taiwan Chang, Luan-Yin; Chiang, Bor-Luen; Kao, Chuan-Liang; Wu, Mei-Hwan; Chen, Pei-Jer; Berkhout, Ben; Yang, Hui-Ching; Huang, Li-Min 2006 2006-01-15 PMC N PMC7109937 16362893.0 10.1086/498875 rxuq3ux8 0.317591
105 Alsaleh_2014 Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control Alsaleh, Asma N; Whiley, David M; Bialasiewicz, Seweryn; Lambert, Stephen B; Ware, Robert S; Nissen, Michael D; Sloots, Theo P; Grimwood, Keith 2014 2014-01-09 COMM-USE N PMC3897990 24405747.0 10.1186/1471-2334-14-15 29jbf9ik 0.317360 Memish_2014
106 Wang_2005 Concentration and detection of SARS coronavirus in sewage from Xiao Tang Shan Hospital and the 309th Hospital Wang, Xin-Wei; Li, Jin-Song; Guo, Ting-Kai; Zhen, Bei; Kong, Qing-Xin; Yi, Bin; Li, Zhong; Song, Nong; Jin, Min; Xiao, Wen-Jun; Zhu, Xiu-Mei; Gu, Chang-Qing; Yin, Jing; Wei, Wei; Yao, Wei; Liu, Chao; Li, Jian-Feng; Ou, Guo-Rong; Wang, Min-Nian; Fang, Tong-Yu; Wang, Gui-Jie; Qiu, Yao-Hui; Wu, Huai-Huan; Chao, Fu-Huan; Li, Jun-Wen 2005 2005-09-30 PMC N PMC7112879 15964082.0 10.1016/j.jviromet.2005.03.022 mtofedpw 0.317225 Xu_D_2005, Leong_2004
107 Gautret_2020 Hydroxychloroquine and azithromycin as a treatment of COVID-19: results of an open-label non-randomized clinical trial Gautret, Philippe; Lagier, Jean-Christophe; Parola, Philippe; Hoang, Van Thuan; Meddeb, Line; Mailhe, Morgane; Doudier, Barbara; Courjon, Johan; Giordanengo, Valérie; Vieira, Vera Esteves; Dupont, Hervé Tissot; Honoré, Stéphane; Colson, Philippe; Chabrière, Eric; La Scola, Bernard; Rolain, Jean-Marc; Brouqui, Philippe; Raoult, Didier 2020 2020-03-20 PMC Y 10.1016/j.ijantimicag.2020.105949 5o9bbspc 0.312978 GAUTRET_2020
108 Piralla_2012 Human parechovirus infections in patients admitted to hospital in Northern Italy, 2008–2010 Piralla, Antonio; Furione, Milena; Rovida, Francesca; Marchi, Antonietta; Stronati, Mauro; Gerna, Giuseppe; Baldanti, Fausto 2012 2012-02-15 PMC N PMC7166678 22337310.0 10.1002/jmv.23197 aj2km7g3 0.306668
109 Kossyvakis_2015 Laboratory Investigation and Phylogenetic Analysis of an Imported Middle East Respiratory Syndrome Coronavirus Case in Greece Kossyvakis, Athanasios; Tao, Ying; Lu, Xiaoyan; Pogka, Vasiliki; Tsiodras, Sotirios; Emmanouil, Mary; Mentis, Andreas F.; Tong, Suxiang; Erdman, Dean D.; Antoniadis, Antonios 2015 2015-04-28 COMM-USE N PMC4412533 25919137.0 10.1371/journal.pone.0125809 z535gkg3 0.306320
110 Peng_2020 2019 Novel Coronavirus can be detected in urine, blood, anal swabs and oropharyngeal swabs samples Liang Peng; Jing Liu; Wenxiong Xu; Qiumin Luo; Keji Deng; Bingliang Lin; Zhiliang Gao 2020 2020-02-25 BioRxiv Y 10.1101/2020.02.21.20026179 t05ummop 0.303869 Flynn_2018 Xu_D_2005, Leong_2004
111 Arwady_2016 Middle East Respiratory Syndrome Coronavirus Transmission in Extended Family, Saudi Arabia, 2014 Arwady, M. Allison; Alraddadi, Basem; Basler, Colin; Azhar, Esam I.; Abuelzein, Eltayb; Sindy, Abdulfattah I.; Sadiq, Bakr M. Bin; Althaqafi, Abdulhakeem O.; Shabouni, Omaima; Banjar, Ayman; Haynes, Lia M.; Gerber, Susan I.; Feikin, Daniel R.; Madani, Tariq A. 2016 2016-08-23 PMC N PMC4982159 27191038.0 10.3201/eid2208.152015 uomdh0sb 0.301885
112 Bin_S_2016 Environmental Contamination and Viral Shedding in MERS Patients During MERS-CoV Outbreak in South Korea Bin, Seo Yu; Heo, Jung Yeon; Song, Min-Suk; Lee, Jacob; Kim, Eun-Ha; Park, Su-Jin; Kwon, Hyeok-il; Kim, Se mi; Kim, Young-il; Si, Young-Jae; Lee, In-Won; Baek, Yun Hee; Choi, Won-Suk; Min, Jinsoo; Jeong, Hye Won; Choi, Young Ki 2016 2016-03-15 PMC N PMC7108026 26679623.0 10.1093/cid/civ1020 wuv10bo9 0.300617
113 Phan_2013 Novel Human Gammapapillomavirus Species in a Nasal Swab Phan, Tung Gia; Vo, Nguyen P.; Aronen, Matti; Jartti, Laura; Jartti, Tuomas; Delwart, Eric 2013 2013-03-07 COMM-USE N PMC3593334 23516180.0 10.1128/genomea.00022-13 33jthco3 0.300287 Chieochansin_2010