Topic 14 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 35 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Jong_2020 Discovery of pharmaceutically-targetable pathways and prediction of survivorship for pneumonia and sepsis patients from the view point of ensemble gene noise Tristan de Jong; Victor Guryev; Yury M. Moshkin 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.10.035717 f5w05rc2 0.633781 Haasnoot_2010, Trobaugh_2017
2 Bahr_2013 Peripheral Blood Mononuclear Cell Gene Expression in Chronic Obstructive Pulmonary Disease Bahr, Timothy M.; Hughes, Grant J.; Armstrong, Michael; Reisdorph, Rick; Coldren, Christopher D.; Edwards, Michael G.; Schnell, Christina; Kedl, Ross; LaFlamme, Daniel J.; Reisdorph, Nichole; Kechris, Katerina J.; Bowler, Russell P. 2013 2013-08-01 PMC N PMC3824029 23590301.0 10.1165/rcmb.2012-0230oc 0czg8zse 0.598628 Haasnoot_2010, Yu_H_2007, Wang_2007, Trypsteen_2016
3 Almansa_2012 Critical COPD respiratory illness is linked to increased transcriptomic activity of neutrophil proteases genes Almansa, Raquel; Socias, Lorenzo; Sanchez-Garcia, Monica; Martín-Loeches, Ignacio; del Olmo, Milagros; Andaluz-Ojeda, David; Bobillo, Felipe; Rico, Lucia; Herrero, Agueda; Roig, Vicente; San-Jose, C Alicia; Rosich, Sara; Barbado, Julia; Disdier, Carlos; de Lejarazu, Raúl Ortiz; Gallegos, Maria C; Fernandez, Victoria; Bermejo-Martin, Jesus F 2012 2012-08-02 COMM-USE N PMC3475085 22852767.0 10.1186/1756-0500-5-401 bw2zz5he 0.570691 Yu_H_2007
4 Kutuzova_2004 Gene expression profiles in rat intestine identify pathways for 1,25-dihydroxyvitamin D3 stimulated calcium absorption and clarify its immunomodulatory properties Kutuzova, Galina D.; DeLuca, Hector F. 2004 2004-12-15 PMC N 15542054.0 10.1016/j.abb.2004.09.004 qr8bzp4r 0.566342 Trobaugh_2017
5 Corley_2020 Comparative in vitro transcriptomic analyses of COVID-19 candidate therapy hydroxychloroquine suggest limited immunomodulatory evidence of SARS-CoV-2 host response genes. Michael Jay Corley; Christopher Sugai; Michael Schotsaert; Robert E. Schwartz; Lishomwa C Ndhlovu 2020 2020-04-14 BioRxiv Y 10.1101/2020.04.13.039263 30x26ip7 0.529651 Haasnoot_2010, Trobaugh_2017, Wang_2007
6 Wang_2010 Global Expression Profiling in Epileptogenesis: Does It Add to the Confusion? Wang, Yi Yuen; Smith, Paul; Murphy, Michael; Cook, Mark 2010 2010-01-23 COMM-USE N PMC2805866 19243383.0 10.1111/j.1750-3639.2008.00254.x a7oqm956 0.499889 Haasnoot_2010
7 VanLeuven_2016 Lung epithelial cells have virus-specific and shared gene expression responses to infection by diverse respiratory viruses James T. VanLeuven; Benjamin J. Ridenhour; Craig R. Miller; Tanya A. Miura 2016 2016-12-02 BioRxiv N 10.1101/090936 iedh762s 0.428551 Trobaugh_2017 VanLeuven_2017
8 Revilla-Fernández_2005 The use of endogenous and exogenous reference RNAs for qualitative and quantitative detection of PRRSV in porcine semen Revilla-Fernández, Sandra; Wallner, Barbara; Truschner, Klaus; Benczak, Alexandra; Brem, Gottfried; Schmoll, Friedrich; Mueller, Mathias; Steinborn, Ralf 2005 2005-06-30 PMC N PMC7112884 15847915.0 10.1016/j.jviromet.2005.01.018 tnwfp1je 0.413207
9 VanLeuven_2017 Lung epithelial cells have virus-specific and shared gene expression responses to infection by diverse respiratory viruses VanLeuven, James T.; Ridenhour, Benjamin J.; Gonzalez, Andres J.; Miller, Craig R.; Miura, Tanya A. 2017 2017-06-02 COMM-USE N PMC5456070 28575086.0 10.1371/journal.pone.0178408 b831y105 0.399995 Trobaugh_2017 VanLeuven_2016
10 Madore_2010 Alveolar macrophages in allergic asthma: An expression signature characterized by heat shock protein pathways Madore, Anne-Marie; Perron, Stéphanie; Turmel, Véronique; Laviolette, Michel; Bissonnette, Élyse Y.; Laprise, Catherine 2010 2010-02-28 PMC N PMC7124256 19913588.0 10.1016/j.humimm.2009.11.005 o3ofey6l 0.382815 Wang_2007, Haasnoot_2010, Trobaugh_2017
11 Lee_J_2012 Genome-wide host responses against infectious laryngotracheitis virus vaccine infection in chicken embryo lung cells Lee, Jeongyoon; Bottje, Walter G; Kong, Byung-Whi 2012 2012-04-24 COMM-USE N PMC3353197 22530940.0 10.1186/1471-2164-13-143 u1uvnlk2 0.374364
12 Gardiner_2013 Gene expression analysis reveals schizophrenia-associated dysregulation of immune pathways in peripheral blood mononuclear cells Gardiner, Erin J.; Cairns, Murray J.; Liu, Bing; Beveridge, Natalie J.; Carr, Vaughan; Kelly, Brian; Scott, Rodney J.; Tooney, Paul A. 2013 2013-04-30 PMC N PMC7094548 23218666.0 10.1016/j.jpsychires.2012.11.007 qnwgiqfn 0.350450 Wang_2007, Trobaugh_2017, Haasnoot_2010, Yu_H_2007 Liu_W_2018
13 Meng_2017 Long non-coding RNA expression profiles in different severity EV71-infected hand foot and mouth disease patients Meng, Jun; Yao, Zhenyu; He, Yaqing; Zhang, Renli; Yang, Hong; Yao, Xiangjie; Chen, Long; Zhang, Hailong; Cheng, Jinquan 2017 2017-12-02 PMC N PMC7092854 28993196.0 10.1016/j.bbrc.2017.09.141 mrpq6w1i 0.337956 Trobaugh_2017, Haasnoot_2010, Zhang_2013, Atianand_2014, Poltronieri_2015 Liui_2020, Xun_M_2015, Trypsteen_2016
14 Belsham_1993 Distinctive features of foot-and-mouth disease virus, a member of the picornavirus family; aspects of virus protein synthesis, protein processing and structure Belsham, Graham J. 1993 1993-12-31 PMC N 8396787.0 10.1016/0079-6107(93)90016-d v3gqjp0c 0.334603
15 Roxby_2020 Detection of SARS-CoV-2 Among Residents and Staff Members of an Independent and Assisted Living Community for Older Adults — Seattle, Washington, 2020 Roxby, Alison C.; Greninger, Alexander L.; Hatfield, Kelly M.; Lynch, John B.; Dellit, Timothy H.; James, Allison; Taylor, Joanne; Page, Libby C.; Kimball, Anne; Arons, Melissa; Schieve, Laura A.; Munanga, Albert; Stone, Nimalie; Jernigan, John A.; Reddy, Sujan C.; Lewis, James; Cohen, Seth A.; Jerome, Keith R.; Duchin, Jeffrey S.; Neme, Santiago 2020 2020-04-10 COMM-USE N PMC7147909 32271726.0 10.15585/mmwr.mm6914e2 70inem5k 0.334603
16 Zamoto_2006 Identification of Ferret ACE2 and its Receptor Function for Sars-Coronavirus Zamoto, Aya; Taguchi, Fumihiro; Fukushi, Shuetsu; Morikawa, Shigeru; Yamada, Yasuko K. 2006 2006-01-01 PMC N PMC7123533 17037589.0 10.1007/978-0-387-33012-9_93 7vn93t58 0.334603
17 Shi_X_2015 Small interfering RNA targeting nonstructural protein1 α (nsp1α) of porcine reproductive and respiratory syndrome virus (PRRSV) can reduce the replication of PRRSV in MARC-145 cells Shi, Xibao; Chang, Yongzhe; Zhang, Xiaozhuan; Wang, Li; Li, Chunxi; Jiang, Kai; Chen, Jing; Wang, Chao; Deng, Ruiguang; Fan, Jianming; Zhang, Gaiping 2015 2015-04-30 PMC N PMC7111734 25683113.0 10.1016/j.rvsc.2015.01.015 fi1vo0gx 0.329716 Trobaugh_2017
18 Huo_D_2020 The regulation mechanism of lncRNAs and mRNAs in sea cucumbers under global climate changes: Defense against thermal and hypoxic stresses Huo, Da; Sun, Lina; Storey, Kenneth B.; Zhang, Libin; Liu, Shilin; Sun, Jingchun; Yang, Hongsheng 2020 2020-03-20 PMC N PMC7144348 31905562.0 10.1016/j.scitotenv.2019.136045 1roubx7a 0.315814 Haasnoot_2010, Trobaugh_2017, Atianand_2014, Wang_2007 Liui_2020, Trypsteen_2016
19 Lederer_2006 Distinct cellular responses differentiating alcohol- and hepatitis C virus-induced liver cirrhosis Lederer, Sharon L; Walters, Kathie-Anne; Proll, Sean; Paeper, Bryan; Robinzon, Shahar; Boix, Loreto; Fausto, Nelson; Bruix, Jordi; Katze, Michael G 2006 2006-11-22 COMM-USE N PMC1676004 17121680.0 10.1186/1743-422x-3-98 phkoh08y 0.308212 Trobaugh_2017, Haasnoot_2010, Herbert_2016
20 Reza_Etemadi_2017 Gene expression patterns induced at different stages of rhinovirus infection in human alveolar epithelial cells Reza Etemadi, Mohammad; Ling, King-Hwa; Zainal Abidin, Shahidee; Chee, Hui-Yee; Sekawi, Zamberi 2017 2017-05-30 COMM-USE N PMC5448745 28558071.0 10.1371/journal.pone.0176947 w77jb4s8 0.305588 Trobaugh_2017, Haasnoot_2010 Ding_2012