Topic 11 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 27 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Isogaya_2014 A Smad3 and TTF-1/NKX2-1 complex regulates Smad4-independent gene expression Isogaya, Kazunobu; Koinuma, Daizo; Tsutsumi, Shuichi; Saito, Roy-Akira; Miyazawa, Keiji; Aburatani, Hiroyuki; Miyazono, Kohei 2014 2014-07-25 PMC N PMC4123303 25060702.0 10.1038/cr.2014.97 y4rwvh1e 0.673623 Siu_Y_2008, Bedadala_2007, Lu_J_2010 Morishita_2011
2 Bedadala_2007 Early Growth Response gene 1 (Egr-1) regulates HSV-1 ICP4 and ICP22 gene expression Bedadala, Gautam R; Pinnoji, Rajeswara C; Hsia, Shao-Chung V 2007 2007-05-15 PMC N PMC7092374 17502875.0 10.1038/cr.2007.44 3sgv0kia 0.669643 Sarkar_2017, Meng_2018, Bedadala_2011
3 Lew_Q_2014 GCN5 inhibits XBP-1S-mediated transcription by antagonizing PCAF action Lew, Qiao Jing; Chu, Kai Ling; Chia, Yi Ling; Soo, Benjamin; Ho, Jia Pei; Ng, Chew Har; Kwok, Hui Si; Chiang, Cheng-Ming; Chang, Yao; Chao, Sheng-Hao 2014 2014-11-16 COMM-USE N PMC4381594 25426559.0 cz0bj8i0 0.664560 Lew_Q_2010, Siu_Y_2008 Lew_Q_2010
4 Liu_Y_2017 Identification of Novel MAGE-G1-Interacting Partners in Retinoic Acid-Induced P19 Neuronal Differentiation Using SILAC-Based Proteomics Liu, Yong; Chen, Yujian; Lin, Shide; Yang, Shuguang; Liu, Shaojun 2017 2017-04-04 COMM-USE N PMC5379670 28374796.0 10.1038/srep44699 84wxtwyf 0.650420
5 Tang_2014 Requirement of CRTC1 coactivator for hepatitis B virus transcription Tang, Hei-Man Vincent; Gao, Wei-Wei; Chan, Chi-Ping; Cheng, Yun; Chaudhary, Vidyanath; Deng, Jian-Jun; Yuen, Kit-San; Wong, Chun-Ming; Ng, Irene Oi-Lin; Kok, Kin-Hang; Zhou, Jie; Jin, Dong-Yan 2014 2014-11-10 NONCOMM N PMC4227773 25300488.0 10.1093/nar/gku925 qtoygz6w 0.646891 Bedadala_2007 Yue_X_2011
6 Zou_W_2010 Involvement of p300 in constitutive and HIV-1 Tat-activated expression of glial fibrillary acidic protein in astrocytes Zou, Wei; Wang, Zhenyuan; Liu, Ying; Fan, Yan; Zhou, Betty Y.; Yang, X. Frank; He, Johnny J. 2010 2010-06-23 PMC N PMC2919602 20578042.0 10.1002/glia.21038 3ixuddet 0.626800 Fan_Y_2010, Bedadala_2007 Fan_Y_2010, Cai_Y_2006
7 Tosoni_2015 Nucleolin stabilizes G-quadruplex structures folded by the LTR promoter and silences HIV-1 viral transcription Tosoni, Elena; Frasson, Ilaria; Scalabrin, Matteo; Perrone, Rosalba; Butovskaya, Elena; Nadai, Matteo; Palù, Giorgio; Fabris, Dan; Richter, Sara N. 2015 2015-10-15 COMM-USE N PMC4605322 26354862.0 10.1093/nar/gkv897 3g67f8sw 0.622949
8 Romagnoli_2008 Early growth response-1 protein is induced by JC virus infection and binds and regulates the JC virus promoter Romagnoli, Luca; Sariyer, Ilker K.; Tung, Jacqueline; Feliciano, Mariha; Sawaya, Bassel E.; Valle, Luis Del; Ferrante, Pasquale; Khalili, Kamel; Safak, Mahmut; White, Martyn K. 2008 2008-06-01 PMC N PMC2632587 18353421.0 10.1016/j.virol.2008.02.021 epjfarac 0.617782 Bedadala_2007, Fan_Y_2010
9 Lew_Q_2010 PCAF interacts with XBP-1S and mediates XBP-1S-dependent transcription Lew, Qiao Jing; Chu, Kai Ling; Lee, Jialing; Koh, Poh Ling; Rajasegaran, Vikneswari; Teo, Jin Yuan; Chao, Sheng-Hao 2010 2010-09-04 NONCOMM N PMC3025546 20817929.0 10.1093/nar/gkq785 174q2pjw 0.605860 Lew_Q_2014, Siu_Y_2008 Lew_Q_2014, Sarkar_2017
10 Dyson_2012 Resveratrol Inhibits KSHV Reactivation by Lowering the Levels of Cellular EGR-1 Dyson, Ossie F.; Walker, Lia R.; Whitehouse, Adrian; Cook, Paul P.; Akula, Shaw M. 2012 2012-03-12 COMM-USE N PMC3299779 22428032.0 10.1371/journal.pone.0033364 uj96zdld 0.603273 Kumar_2016 Sarkar_2017
11 Smith_2003 Autoinhibition of Bcr-Abl through Its SH3 Domain Smith, Kristen M.; Yacobi, Rinat; Van Etten, Richard A. 2003 2003-07-31 PMC N PMC7128750 12887890.0 10.1016/s1097-2765(03)00274-0 8ksnihp6 0.601798 Kumar_2016, Siu_Y_2008
12 Levros_2010 Characterization of nuclear factors modulating the apolipoprotein D promoter during growth arrest: Implication of PARP-1, APEX-1 and ERK1/2 catalytic activities Levros, Louis-Charles; Carmo, Sonia Do; Edouard, Elsy; Legault, Philippe; Charfi, Cyndia; Rassart, Eric 2010 2010-09-30 PMC N PMC7114184 20493910.0 10.1016/j.bbamcr.2010.04.011 ktm1wjvq 0.601086 Siu_Y_2008, Bedadala_2007, Lew_Q_2014 Auch_2004
13 Fan_Y_2010 Activation of Egr-1 expression in astrocytes by HIV-1 Tat: new insights into astrocyte-mediated Tat neurotoxicity Fan, Yan; Zou, Wei; Green, Linden A.; Kim, Byung oh; He, Johnny J. 2010 2010-04-23 PMC N PMC3056338 20414733.0 10.1007/s11481-010-9217-8 5qkk417x 0.596832 Bedadala_2007, Zhu_Z_2018 Zou_W_2010, Cai_Y_2006
14 Tang_2015 SIRT1 Suppresses Human T-Cell Leukemia Virus Type 1 Transcription Tang, Hei-Man Vincent; Gao, Wei-Wei; Chan, Chi-Ping; Cheng, Yun; Deng, Jian-Jun; Yuen, Kit-San; Iha, Hidekatsu; Jin, Dong-Yan 2015 2015-06-10 PMC N PMC4524255 26063426.0 10.1128/jvi.01229-15 85grhupk 0.551843 Lee_S_2016, Kumar_2016
15 Sarkar_2017 Egr-1 regulates RTA transcription through a cooperative involvement of transcriptional regulators Sarkar, Roni; Verma, Subhash C. 2017 2017-09-05 COMM-USE N PMC5710935 29207655.0 10.18632/oncotarget.20648 i8lw83w2 0.547365 Bedadala_2007, Siu_Y_2008 Dyson_2012, Bedadala_2007, Cai_Y_2006, Tang_2014
16 Hu_F_2017 Expression profile and promoter analysis of HEPIS Hu, Fen; Zhang, Yunfeng 2017 2017-10-25 PMC N PMC5763650 29399063.0 10.3892/etm.2017.5374 ih0z0ohw 0.536289 Bedadala_2007
17 Garrido_2009 EBNA3C interacts with Gadd34 and counteracts the unfolded protein response Garrido, Jose L; Maruo, Seijii; Takada, Kenzo; Rosendorff, Adam 2009 2009-12-29 COMM-USE N PMC2805635 20040105.0 10.1186/1743-422x-6-231 pwps783y 0.522760 Siu_Y_2008
18 Homma_2014 Persistent prion infection disturbs the function of Oct-1, resulting in the down-regulation of murine interferon regulatory factor-3 Homma, Takujiro; Ishibashi, Daisuke; Nakagaki, Takehiro; Fuse, Takayuki; Sano, Kazunori; Satoh, Katsuya; Atarashi, Ryuichiro; Nishida, Noriyuki 2014 2014-08-08 NONCOMM N PMC4126003 25103253.0 10.1038/srep06006 jspxlk1a 0.514096 Bedadala_2007
19 Schoenherr_2017 Ambra1 spatially regulates Src activity and Src/FAK-mediated cancer cell invasion via trafficking networks Schoenherr, Christina; Byron, Adam; Sandilands, Emma; Paliashvili, Ketevan; Baillie, George S; Garcia-Munoz, Amaya; Valacca, Cristina; Cecconi, Francesco; Serrels, Bryan; Frame, Margaret C 2017 2017-03-31 COMM-USE N PMC5376188 28362576.0 10.7554/elife.23172 zuap37po 0.498256 Kumar_2016, Siu_Y_2008
20 Ray_B_2012 Research Resource: Identification of Novel Growth Hormone-Regulated Phosphorylation Sites by Quantitative Phosphoproteomics Ray, Bridgette N.; Kweon, Hye Kyong; Argetsinger, Lawrence S.; Fingar, Diane C.; Andrews, Philip C.; Carter-Su, Christin 2012 2012-05-08 NONCOMM N PMC3858665 22570334.0 10.1210/me.2011-1258 xtj2ywf3 0.494068 Siu_Y_2008, Lin_L_2019, Mizutani_2004, Kumar_2016 He_K_2012, Banning_2012
21 Elizalde_2017 X protein variants of the autochthonous Latin American hepatitis B virus F genotype promotes human hepatocyte death by the induction of apoptosis and autophagy Elizalde, María Mercedes; Campos, Rodolfo Héctor; Barbini, Luciana 2017 2017-10-15 PMC N PMC7114566 28986109.0 10.1016/j.virusres.2017.09.025 8v2t6ywu 0.491411 Aweya_2015 Aweya_2013
22 Sun_Q_2018 Serum-dependent and independent regulation of PARP2 Qizhi Sun; Mohamed I. Gatie; Gregory M. Kelly 2018 2018-11-29 BioRxiv N 10.1101/483289 ccfrx3md 0.467610 Auch_2004
23 Ospina_2011 Protein oligomerization mediated by the transmembrane carboxyl terminal domain of Bcl-XL Ospina, Angélica; Lagunas-Martínez, Alfredo; Pardo, Julián; Carrodeguas, José A. 2011 2011-10-03 None N PMC7164028 21856303.0 10.1016/j.febslet.2011.08.012 uw9ygfe6 0.450880 Smith_2003
24 ten_Hoeve_2019 Sustained Egr-1 Response via p38 MAP Kinase Signaling Modulates Early Immune Responses of Dendritic Cells Parasitized by Toxoplasma gondii ten Hoeve, Arne L.; Hakimi, Mohamed-Ali; Barragan, Antonio 2019 2019-10-11 COMM-USE N PMC6797980 31681626.0 10.3389/fcimb.2019.00349 mrfvdpmk 0.438582 Lee_S_2016, Kim_S_2018
25 Siu_Y_2008 Activation of TORC1 Transcriptional Coactivator through MEKK1-induced Phosphorylation Siu, Yeung-Tung; Ching, Yick-Pang; Jin, Dong-Yan 2008 2008-11-01 PMC N PMC2575155 18784253.0 10.1091/mbc.e08-04-0369 31m3sxmf 0.430743 Lin_L_2019, Mizutani_2004, Mitomo_2016 Banning_2012, Auch_2004, Brunetti_2018
26 Yang_2019 miR-1306 Mediates the Feedback Regulation of the TGF-β/SMAD Signaling Pathway in Granulosa Cells Yang, Liu; Du, Xing; Liu, Lu; Cao, Qiuyu; Pan, Zengxiang; Li, Qifa 2019 2019-03-31 COMM-USE N PMC6523565 30935128.0 10.3390/cells8040298 16qix4ab 0.400431 Siu_Y_2008, Bedadala_2007, Lu_J_2010 Yan_X_2009, Auch_2004
27 Zhao_2016 The Role of HBZ in HTLV-1-Induced Oncogenesis Zhao, Tiejun 2016 2016-02-02 COMM-USE N PMC4776189 26848677.0 10.3390/v8020034 ebj5dgl9 0.395630 Liu_J_2010
28 Lee_S_2018 Understanding of the functional role(s) of the Activating Transcription Factor 4(ATF4) in HIV regulation and production Lee, Seong-Deok; Yu, Kyung-Lee; Park, Seong-Hyun; Jung, Yu-Mi; Kim, Min-Jeong; You, Ji-Chang 2018 2018-08-31 NONCOMM N PMC6130831 29636121.0 10.5483/bmbrep.2018.51.8.054 81wrv6u4 0.377186 Bedadala_2007, Siu_Y_2008 Auch_2004, Sarkar_2017
29 Marini_2007 HIV‐1 matrix protein p17 binds to monocytes and selectively stimulates MCP‐1 secretion: role of transcriptional factor AP‐1 Marini, Elena; Tiberio, Laura; Caracciolo, Sonia; Tosti, Giorgio; Guzman, Carlos A.; Schiaffonati, Luisa; Fiorentini, Simona; Caruso, Arnaldo 2007 2007-10-26 PMC N PMC7162350 18042260.0 10.1111/j.1462-5822.2007.01073.x g5r2b043 0.373978
30 Bedadala_2011 Lytic HSV-1 infection induces the multifunctional transcription factor Early Growth Response-1 (EGR-1) in rabbit corneal cells Bedadala, Gautam R; Palem, Jayavardhana R; Graham, Lorna; Hill, James M; McFerrin, Harris E; Hsia, Shao-Chung 2011 2011-05-27 COMM-USE N PMC3120787 21619646.0 10.1186/1743-422x-8-262 vimfj9s8 0.372383 Bedadala_2007, Kumar_2016, Harrison_2007 Bedadala_2007, Sarkar_2017
31 Shi_Y_2016 Resveratrol enhances HBV replication through activating Sirt1-PGC-1α-PPARα pathway Shi, Yixian; Li, Yongjun; Huang, Chenjie; Ying, Lixiong; Xue, Jihua; Wu, Haicong; Chen, Zhi; Yang, Zhenggang 2016 2016-04-21 COMM-USE N PMC4838842 27098390.0 10.1038/srep24744 3r5fgeap 0.369805 Yue_X_2011, CHEN_2012, Saleh_2018, Tang_2014
32 Yan_X_2006 Nucleocapsid protein of SARS-CoV activates the expression of cyclooxygenase-2 by binding directly to regulatory elements for nuclear factor-kappa B and CCAAT/enhancer binding protein Yan, Xiaohong; Hao, Qian; Mu, Yongxin; Timani, Khalid Amine; Ye, Linbai; Zhu, Ying; Wu, Jianguo 2006 2006-12-31 PMC N PMC7108415 16546436.0 10.1016/j.biocel.2006.02.003 w4qpyfp7 0.355486 Bedadala_2007 Zhang_2007, Liao_2005
33 Banning_2012 Transcriptional Regulation of Flotillins by the Extracellularly Regulated Kinases and Retinoid X Receptor Complexes Banning, Antje; Ockenga, Wymke; Finger, Fabian; Siebrasse, Philipp; Tikkanen, Ritva 2012 2012-09-18 COMM-USE N PMC3445523 23029064.0 10.1371/journal.pone.0045514 lzsd4w26 0.338400 Siu_Y_2008, Lee_S_2016, Lin_L_2019 Brunetti_2018, Auch_2004
34 Marriott_2016 NUDT2 Disruption Elevates Diadenosine Tetraphosphate (Ap(4)A) and Down-Regulates Immune Response and Cancer Promotion Genes Marriott, Andrew S.; Vasieva, Olga; Fang, Yongxiang; Copeland, Nikki A.; McLennan, Alexander G.; Jones, Nigel J. 2016 2016-05-04 COMM-USE N PMC4856261 27144453.0 10.1371/journal.pone.0154674 0ozzbp85 0.324461 Lee_S_2016 Gabrilovac_2005, Vert_2016
35 Wang_2017 HLA-DMB restricts human T-cell leukemia virus type-1 (HTLV-1) protein expression via regulation of ATG7 acetylation Wang, Jie; Song, Di; Liu, Yanzi; Lu, Guangjian; Yang, Shuai; Liu, Lu; Gao, Zhitao; Ma, Lingling; Guo, Zhixiang; Zhang, Chenguang; Wang, Hui; Yang, Bo 2017 2017-10-31 COMM-USE N PMC5663917 29089548.0 10.1038/s41598-017-14882-z wyb9khlo 0.315011 Aweya_2015
36 Yue_X_2011 Induction of Cyclooxygenase-2 Expression by Hepatitis B Virus Depends on Demethylation-associated Recruitment of Transcription Factors to the Promoter Yue, Xin; Yang, Fang; Yang, Yongbo; Mu, Yongxin; Sun, Wei; Li, Wei; Xu, Dongping; Wu, Jianguo; Zhu, Ying 2011 2011-03-14 COMM-USE N PMC3066118 21401943.0 10.1186/1743-422x-8-118 qa8fxbpe 0.309840 Bedadala_2007, Aweya_2015, Lee_S_2016 Lu_L_2008, Tang_2014, Auch_2004