Topic 07 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 27 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Zhang_2012 Virus-induced ER stress and the unfolded protein response Zhang, Lingrui; Wang, Aiming 2012 2012-12-28 COMM-USE N PMC3531707 23293645.0 10.3389/fpls.2012.00293 5s6zgvy6 0.815908 Choi_2020, Fung_2014, Kim_S_2018 Fung_2014, Zhang_2016
2 Fung_2014 Coronavirus-induced ER stress response and its involvement in regulation of coronavirus–host interactions Fung, To Sing; Huang, Mei; Liu, Ding Xiang 2014 2014-12-19 PMC N PMC7114476 25304691.0 10.1016/j.virusres.2014.09.016 msnhtzck 0.758012 Choi_2020, Kim_S_2018, Zhang_2012, Siu_Y_2008 Akazawa_2013, Zhang_2012
3 Choi_2020 Insights Into the Role of Endoplasmic Reticulum Stress in Infectious Diseases Choi, Ji-Ae; Song, Chang-Hwa 2020 2020-01-31 COMM-USE N PMC7005066 32082307.0 10.3389/fimmu.2019.03147 k1hm6oek 0.696627 Kim_S_2018, Zhang_2012 Zhang_2012, Hu_H_2019
4 Feng_2015 M1 of Murine Gamma-Herpesvirus 68 Induces Endoplasmic Reticulum Chaperone Production Feng, Jiaying; Gong, Danyang; Fu, Xudong; Wu, Ting-ting; Wang, Jane; Chang, Jennifer; Zhou, Jingting; Lu, Gang; Wang, Yibin; Sun, Ren 2015 2015-11-30 COMM-USE N PMC4663489 26615759.0 10.1038/srep17228 juj5ku3b 0.690949 Choi_2020, Zhang_2012, Kim_S_2018 Akazawa_2013
5 Zhang_2016 ER Stress, UPR and Virus Infections in Plants Zhang, Lingrui; Wang, Aiming 2016 2016-06-22 PMC N PMC7123154 10.1007/978-3-319-32919-2_7 r0nsca6f 0.690640 Choi_2020, Zhang_2012, Fung_2014 Zhang_2012
6 Zhang_2015 The UPR Branch IRE1-bZIP60 in Plants Plays an Essential Role in Viral Infection and Is Complementary to the Only UPR Pathway in Yeast Zhang, Lingrui; Chen, Hui; Brandizzi, Federica; Verchot, Jeanmarie; Wang, Aiming 2015 2015-04-15 COMM-USE N PMC4398384 25875739.0 10.1371/journal.pgen.1005164 idvl94b3 0.678494 Choi_2020
7 Sen_D_2014 Cellular unfolded protein response against viruses used in gene therapy Sen, Dwaipayan; Balakrishnan, Balaji; Jayandharan, Giridhara R. 2014 2014-05-26 COMM-USE N PMC4033601 24904562.0 10.3389/fmicb.2014.00250 ze2btynf 0.657176 Choi_2020, Kim_S_2018, Zhang_2012 Zhang_2012
8 Hollien_2009 Regulated Ire1-dependent decay of messenger RNAs in mammalian cells Hollien, Julie; Lin, Jonathan H.; Li, Han; Stevens, Nicole; Walter, Peter; Weissman, Jonathan S. 2009 2009-08-10 NONCOMM N PMC2728407 19651891.0 10.1083/jcb.200903014 3gwm1c2f 0.647461 Siu_Y_2008 Auch_2004
9 Asha_2018 Virus and tumor microenvironment induced ER stress and unfolded protein response: from complexity to therapeutics Asha, Kumari; Sharma-Walia, Neelam 2018 2018-08-07 COMM-USE N PMC6112759 30159133.0 10.18632/oncotarget.25886 bf2o39sq 0.645323 Siu_Y_2008, Choi_2020, Kim_S_2018, Lin_L_2019 Zhang_2012, Hu_H_2019, Akazawa_2013
10 Ibrahim_2019 GRP78: A cell's response to stress Ibrahim, Ibrahim M.; Abdelmalek, Doaa H.; Elfiky, Abdo A. 2019 2019-06-01 PMC N PMC7094232 30978349.0 10.1016/j.lfs.2019.04.022 qcfgigga 0.615371 Choi_2020, Zhang_2012, Sir_D_2008 Akazawa_2013, Zhang_2012
11 Zhu_S_2017 PERK and XBP1 differentially regulate CXCL10 and CCL2 production Zhu, Shuang; Liu, Hua; Sha, Haibo; Qi, Ling; Gao, Dian-shuai; Zhang, Wenbo 2017 2017-02-01 PMC N PMC5359061 28065589.0 10.1016/j.exer.2017.01.002 kv3m2kul 0.594413 Kim_S_2018, Lee_S_2016, Siu_Y_2008 Chen_2007, Auch_2004
12 Fung_2014 Coronavirus infection, ER stress, apoptosis and innate immunity Fung, To S.; Liu, Ding X. 2014 2014-06-17 COMM-USE N PMC4060729 24987391.0 10.3389/fmicb.2014.00296 5kavwv3u 0.589830 Choi_2020, Kim_S_2018, Zhang_2012, Fung_2014 Fung_2014, Akazawa_2013
13 Saul_2019 ULK1/2 Restricts the Formation of Inducible SINT-Speckles, Membraneless Organelles Controlling the Threshold of TBK1 Activation Saul, Vera Vivian; Seibert, Markus; Krüger, Marcus; Jeratsch, Sylvia; Kracht, Michael; Schmitz, Michael Lienhard 2019 2019-08-06 None N PMC6710720 31442668.0 10.1016/j.isci.2019.08.001 5xk3z4ck 0.555725 Siu_Y_2008, Kumar_2016
14 Minakshi_2009 The SARS Coronavirus 3a Protein Causes Endoplasmic Reticulum Stress and Induces Ligand-Independent Downregulation of the Type 1 Interferon Receptor Minakshi, Rinki; Padhan, Kartika; Rani, Manjusha; Khan, Nabab; Ahmad, Faizan; Jameel, Shahid 2009 2009-12-17 COMM-USE N PMC2791231 20020050.0 10.1371/journal.pone.0008342 bvaf10dw 0.552804 Siu_Y_2008, Mizutani_2004 Surjit_2004
15 Balakrishnan_2013 Activation of the Cellular Unfolded Protein Response by Recombinant Adeno-Associated Virus Vectors Balakrishnan, Balaji; Sen, Dwaipayan; Hareendran, Sangeetha; Roshini, Vaani; David, Sachin; Srivastava, Alok; Jayandharan, Giridhara R. 2013 2013-01-08 COMM-USE N PMC3540029 23320106.0 10.1371/journal.pone.0053845 s7h6884o 0.550728 Siu_Y_2008, Kumar_2016, Rohde_2019
16 Bischof_2008 Activation of the Unfolded Protein Response Is Required for Defenses against Bacterial Pore-Forming Toxin In Vivo Bischof, Larry J.; Kao, Cheng-Yuan; Los, Ferdinand C. O.; Gonzalez, Manuel R.; Shen, Zhouxin; Briggs, Steven P.; van der Goot, F. Gisou; Aroian, Raffi V. 2008 2008-10-10 COMM-USE N PMC2553261 18846208.0 10.1371/journal.ppat.1000176 zt6i3o86 0.540861 Choi_2020, Siu_Y_2008, Kim_S_2018, Lin_L_2019
17 Palangi_2017 Effects of oxidative and thermal stresses on stress granule formation in human induced pluripotent stem cells Palangi, Freshteh; Samuel, Samson M.; Thompson, I. Richard; Triggle, Chris R.; Emara, Mohamed M. 2017 2017-07-26 COMM-USE N PMC5528897 28746394.0 10.1371/journal.pone.0182059 riwplymp 0.533378
18 Lutz_2019 Mammalian orthoreovirus Infection is Enhanced in Cells Pre-Treated with Sodium Arsenite Lutz, Michael M.; Worth, Megan P.; Hinchman, Meleana M.; Parker, John S.L.; Ledgerwood, Emily D. 2019 2019-06-18 COMM-USE N PMC6631071 31216693.0 10.3390/v11060563 k1sxjmou 0.516409 Lutz_2019
19 Rohde_2019 Marburg virus regulates the IRE1/XBP1-dependent unfolded protein response to ensure efficient viral replication Rohde, Cornelius; Becker, Stephan; Krähling, Verena 2019 2019-09-07 COMM-USE N PMC6746283 31495285.0 10.1080/22221751.2019.1659552 o9drnoez 0.513960 Kumar_2016
20 Hu_H_2019 The C/EBP Homologous Protein (CHOP) Transcription Factor Functions in Endoplasmic Reticulum Stress-Induced Apoptosis and Microbial Infection Hu, Hai; Tian, Mingxing; Ding, Chan; Yu, Shengqing 2019 2019-01-04 COMM-USE N PMC6328441 30662442.0 10.3389/fimmu.2018.03083 i0afrxno 0.506494 Choi_2020, Kim_S_2018, Sir_D_2008, Zhang_2012 Akazawa_2013, Li_Y_2018
21 John_2011 Hepatitis E Virus ORF2 Protein Activates the Pro-Apoptotic Gene CHOP and Anti-Apoptotic Heat Shock Proteins John, Lijo; Thomas, Saijo; Herchenröder, Ottmar; Pützer, Brigitte M.; Schaefer, Stephan 2011 2011-09-23 COMM-USE N PMC3179511 21966512.0 10.1371/journal.pone.0025378 ncbbno22 0.486911
22 Cao_L_2020 Porcine parvovirus replication is suppressed by activation of the PERK signaling pathway and endoplasmic reticulum stress-mediated apoptosis Cao, Liyan; Xue, Mei; Chen, Jianfei; Shi, Hongyan; Zhang, Xin; Shi, Da; Liu, Jianbo; Huang, Liping; Wei, Yanwu; Liu, Changming; Feng, Li 2020 2020-01-02 PMC N PMC7127029 31605941.0 10.1016/j.virol.2019.09.012 600flwb1 0.484664 Siu_Y_2008, Choi_2020 Yuan_2016, Akazawa_2013
23 Karaki_2015 Chapter One The Eukaryotic Translation Initiation Factor 4E (eIF4E) as a Therapeutic Target for Cancer Karaki, Sara; Andrieu, Claudia; Ziouziou, Hajer; Rocchi, Palma 2015 2015-12-31 PMC N 26572974.0 10.1016/bs.apcsb.2015.09.001 5qrp9edr 0.482800
24 Kim_S_2018 Differential Regulation of Toll-Like Receptor-Mediated Cytokine Production by Unfolded Protein Response Kim, Sena; Joe, Yeonsoo; Surh, Young-Joon; Chung, Hun Taeg 2018 2018-04-24 COMM-USE N PMC5941770 29849928.0 10.1155/2018/9827312 h8txbd3p 0.480806 Choi_2020
25 Sung_2009 The 8ab protein of SARS-CoV is a luminal ER membrane-associated protein and induces the activation of ATF6 Sung, Shu-Chiun; Chao, Che-Yi; Jeng, King-Song; Yang, Jyh-Yuan; Lai, Michael M.C. 2009 2009-05-10 PMC N PMC7103415 19304306.0 10.1016/j.virol.2009.02.021 vrtq430u 0.478313
26 Scheper_2002 Does phosphorylation of the cap‐binding protein eIF4E play a role in translation initiation? Scheper, Gert C.; Proud, Christopher G. 2002 2002-10-28 PMC N PMC7163980 12423333.0 10.1046/j.1432-1033.2002.03291.x iekxvaxg 0.475387 Smith_2003, Kumar_2016, Siu_Y_2008
27 Chionh_2019 High basal heat-shock protein expression in bats confers resistance to cellular heat/oxidative stress Chionh, Yok Teng; Cui, Jie; Koh, Javier; Mendenhall, Ian H.; Ng, Justin H. J.; Low, Dolyce; Itahana, Koji; Irving, Aaron T.; Wang, Lin-Fa 2019 2019-06-22 PMC N PMC6629734 31230214.0 10.1007/s12192-019-01013-y uwbpbai7 0.471735
28 Hou_J_2017 PERK Signal-Modulated Protein Translation Promotes the Survivability of Dengue 2 Virus-Infected Mosquito Cells and Extends Viral Replication Hou, Jiun-Nan; Chen, Tien-Huang; Chiang, Yi-Hsuan; Peng, Jing-Yun; Yang, Tsong-Han; Cheng, Chih-Chieh; Sofiyatun, Eny; Chiu, Cheng-Hsun; Chiang-Ni, Chuan; Chen, Wei-June 2017 2017-09-20 COMM-USE N PMC5618028 28930151.0 10.3390/v9090262 synm1cyw 0.466212 Kumar_2016 Aweya_2013
29 Lutz_2019 Mammalian orthoreovirus infection is enhanced in cells pre-treated with sodium arsenite Michael M. Lutz; Megan P. Worth; Meleana M. Hinchman; John S. L. Parker; Emily D. Ledgerwood 2019 2019-02-20 BioRxiv N 10.1101/555367 cpfwzudq 0.462453 Lutz_2019
30 Borsa_2015 HIV infection and antiretroviral therapy lead to unfolded protein response activation Borsa, Mariana; Ferreira, Pedro L. C.; Petry, Andrea; Ferreira, Luiz G. E.; Camargo, Maristela M.; Bou-Habib, Dumith Chequer; Pinto, Aguinaldo R. 2015 2015-05-15 COMM-USE N PMC4455982 25976933.0 10.1186/s12985-015-0298-0 5pho1vgo 0.455140 Choi_2020 Sen_D_2014
31 Rabouw_2019 Small molecule ISRIB suppresses the integrated stress response within a defined window of activation Rabouw, Huib H.; Langereis, Martijn A.; Anand, Aditya A.; Visser, Linda J.; de Groot, Raoul J.; Walter, Peter; van Kuppeveld, Frank J. M. 2019 2019-02-05 None N PMC6369741 30674674.0 10.1073/pnas.1815767116 eg1e8bbg 0.441336 Lee_S_2016, Siu_Y_2008 Auch_2004
32 Szwed_2018 The alkyl side chain of PACA nanoparticles dictates the impact on cellular stress responses and the mode of particle-induced cell death Marzena Szwed; Tonje Sønstevold; Anders Øverbye; Nikolai Engedal; Beata Grallert; Ýrr A Mørch; Tore-Geir Iversen; Tore Skotland; Kirsten Sandvig; Maria L Torgersen 2018 2018-04-19 BioRxiv N 10.1101/304618 uu9l1uf4 0.413296 Choi_2020, Sir_D_2008
33 Li_Y_2018 CHOP and IRE1α-XBP1/JNK signaling promote Newcastle Disease Virus induced apoptosis and benefit virus proliferation Yanrong Li; Ying Liao; Qiaona Niu; Feng Gu; Yingjie Sun; Chunchun Meng; Lei Tan; Cuiping Song; Xusheng Qiu; Chan Ding 2018 2018-04-12 BioRxiv N 10.1101/300129 mrpj8l3q 0.409671 Siu_Y_2008, Mitomo_2016, Lee_S_2016 Hu_H_2019, Ding_2014
34 Wu_J_2018 Apocynin protects endothelial cells from endoplasmic reticulum stress-induced apoptosis via IRE1α engagement Wu, Jie; Zhang, Weijin; Liu, Xiaohui; Wu, Lili; He, Guangting; Li, Peixin; Guo, Xiaohua; Chen, Zhongqing; Huang, Qiaobing 2018 2018-04-25 PMC N PMC7088535 29696609.0 10.1007/s11010-018-3362-4 x7i4ngej 0.392989 Choi_2020, Kim_S_2018, Mitomo_2016, Siu_Y_2008 Akazawa_2013, Dong_2018, DING_2018, Auch_2004
35 Petersson_2012 The p53 target gene TRIM22 directly or indirectly interacts with the translation initiation factor eIF4E and inhibits the binding of eIF4E to eIF4G Petersson, Jessica; Ageberg, Malin; Sandén, Carl; Olofsson, Tor; Gullberg, Urban; Drott, Kristina 2012 2012-05-31 PMC N PMC7161774 22509910.0 10.1111/boc.201100099 kahi93gj 0.361977
36 LUO_X_2018 Coxsackievirus B3 Infection Triggers Autophagy through 3 Pathways of Endoplasmic Reticulum Stress LUO, Xiao Nuan; YAO, Hai Lan; SONG, Juan; SONG, Qin Qin; SHI, Bing Tian; XIA, Dong; HAN, Jun 2018 2018-12-31 PMC N PMC7126911 30636656.0 10.3967/bes2018.115 tmjgmqdk 0.359351 Mizutani_2004, Mitomo_2016 Ávila-Pérez_2019, Akazawa_2013
37 Schmitz_2018 The Crosstalk of Endoplasmic Reticulum (ER) Stress Pathways with NF-κB: Complex Mechanisms Relevant for Cancer, Inflammation and Infection Schmitz, M. Lienhard; Shaban, M. Samer; Albert, B. Vincent; Gökçen, Anke; Kracht, Michael 2018 2018-05-16 COMM-USE N PMC6027367 29772680.0 10.3390/biomedicines6020058 5h5rb46p 0.351858 Siu_Y_2008, Kim_S_2018, Choi_2020 Auch_2004, McNamara_2019
38 Li_Y_2019 eIF2α-CHOP-BCl-2/JNK and IRE1α-XBP1/JNK signaling promote apoptosis and inflammation and support the proliferation of Newcastle disease virus Li, Yanrong; Jiang, Weiyu; Niu, Qiaona; Sun, Yingjie; Meng, Chunchun; Tan, Lei; Song, Cuiping; Qiu, Xusheng; Liao, Ying; Ding, Chan 2019 2019-11-26 COMM-USE N PMC6877643 31767828.0 10.1038/s41419-019-2128-6 x98194l0 0.347689 Li_Y_2018, Siu_Y_2008, Mizutani_2004 Li_Y_2018, DING_2018, Zhao_2016, Chen_2002
39 Zhou_2017 Porcine circovirus type 2 capsid protein induces unfolded protein response with subsequent activation of apoptosis Zhou, Ying-shan; Gu, Yuan-xing; Qi, Bao-zhu; Zhang, Yi-kai; Li, Xiao-liang; Fang, Wei-huan 2017 2017-04-01 PMC N PMC5394096 28378569.0 10.1631/jzus.b1600208 ll93g47p 0.340438 Siu_Y_2008, Kumar_2016 Wang_2019, John_2011
40 DeDiego_2011 Severe Acute Respiratory Syndrome Coronavirus Envelope Protein Regulates Cell Stress Response and Apoptosis DeDiego, Marta L.; Nieto-Torres, Jose L.; Jiménez-Guardeño, Jose M.; Regla-Nava, Jose A.; Álvarez, Enrique; Oliveros, Juan Carlos; Zhao, Jincun; Fett, Craig; Perlman, Stanley; Enjuanes, Luis 2011 2011-10-20 COMM-USE N PMC3197621 22028656.0 10.1371/journal.ppat.1002315 vguwpa3w 0.332696 Kim_S_2018, Choi_2020, Aweya_2015
41 Su_A_2017 Opposite Roles of RNase and Kinase Activities of Inositol-Requiring Enzyme 1 (IRE1) on HSV-1 Replication Su, Airong; Wang, Huanru; Li, Yanlei; Wang, Xiaohui; Chen, Deyan; Wu, Zhiwei 2017 2017-08-23 COMM-USE N PMC5618002 28832521.0 10.3390/v9090235 oyevbxtc 0.330721 Kumar_2016
42 Qi_J_2006 A dynamic model for the p53 stress response networks under ion radiation Qi, J.-P.; Shao, S.-H.; Li, D.-D.; Zhou, G.-P. 2006 2006-10-31 PMC N PMC7088058 17072789.0 10.1007/s00726-006-0454-3 krliloi7 0.325895 Siu_Y_2008
43 Akay_2012 Activation status of integrated stress response pathways in neurones and astrocytes of HIV-associated neurocognitive disorders (HAND) cortex Akay, C.; Lindl, K. A.; Shyam, N.; Nabet, B.; Goenaga-Vazquez, Y.; Ruzbarsky, J.; Wang, Y.; Kolson, D. L.; Jordan-Sciutto, K. L. 2012 2012-03-05 PMC N PMC3708539 21883374.0 10.1111/j.1365-2990.2011.01215.x smt4iebs 0.324044 Choi_2020, Lee_S_2016, Kim_S_2018
44 Tuval-Kochen_2013 Eukaryotic Initiation Factor 2α - a Downstream Effector of Mammalian Target of Rapamycin - Modulates DNA Repair and Cancer Response to Treatment Tuval-Kochen, Liron; Paglin, Shoshana; Keshet, Gilmor; Lerenthal, Yaniv; Nakar, Charles; Golani, Tamar; Toren, Amos; Yahalom, Joachim; Pfeffer, Raphael; Lawrence, Yaacov 2013 2013-10-25 COMM-USE N PMC3808413 24204783.0 10.1371/journal.pone.0077260 9r20hxks 0.321126 Siu_Y_2008, Lee_S_2016, Mizutani_2004, Bie_C_2016, Kumar_2016 Krześniak_2020, Auch_2004
45 Wang_2014 Triggering unfolded protein response by 2-Deoxy-d-glucose inhibits porcine epidemic diarrhea virus propagation Wang, Yue; Li, Jia-rong; Sun, Ming-xia; Ni, Bo; Huan, Changchao; Huang, Li; Li, Chen; Fan, Hong-jie; Ren, Xiao-feng; Mao, Xiang 2014 2014-06-30 PMC N PMC7113873 24681123.0 10.1016/j.antiviral.2014.03.007 jt0yw12y 0.317870 Kumar_2016 Akazawa_2013