| 1 |
Firestone_2012 |
Adding the spatial dimension to the social network analysis of an epidemic: Investigation of the 2007 outbreak of equine influenza in Australia |
Firestone, Simon M.; Christley, Robert M.; Ward, Michael P.; Dhand, Navneet K. |
2012 |
2012-09-15 |
PMC |
N |
PMC7126086 |
22365721.0 |
10.1016/j.prevetmed.2012.01.020 |
xftxcgeu |
0.738001 |
|
Chen_2007, Milne_2020 |
| 2 |
Ejima_2020 |
Inferring Timing of Infection Using Within-host SARS-CoV-2 Infection Dynamics Model: Are "Imported Cases" Truly Imported? |
Keisuke Ejima; Kwang Su Kim; Yusuke Ito; Shoya Iwanami; Hirofumi Ohashi; Yoshiki Koizumi; Koichi Watashi; Ana I Bento; Kazuyuki Aihara; Shingo Iwami |
2020 |
2020-03-31 |
BioRxiv |
Y |
|
|
10.1101/2020.03.30.20040519 |
gb9rkv9c |
0.656901 |
|
Kretzschmar_2020, Nishiura_2007, Yuan_2020 |
| 3 |
Nah_K_2016 |
Estimating risks of importation and local transmission of Zika virus infection |
Nah, Kyeongah; Mizumoto, Kenji; Miyamatsu, Yuichiro; Yasuda, Yohei; Kinoshita, Ryo; Nishiura, Hiroshi |
2016 |
2016-04-05 |
COMM-USE |
N |
PMC4824915 |
27069825.0 |
10.7717/peerj.1904 |
2b2rnkpz |
0.610594 |
|
|
| 4 |
Qiu_S_2015 |
Whole-genome Sequencing for Tracing the Transmission Link between Two ARD Outbreaks Caused by a Novel HAdV Serotype 7 Variant, China |
Qiu, Shaofu; Li, Peng; Liu, Hongbo; Wang, Yong; Liu, Nan; Li, Chengyi; Li, Shenlong; Li, Ming; Jiang, Zhengjie; Sun, Huandong; Li, Ying; Xie, Jing; Yang, Chaojie; Wang, Jian; Li, Hao; Yi, Shengjie; Wu, Zhihao; Jia, Leili; Wang, Ligui; Hao, Rongzhang; Sun, Yansong; Huang, Liuyu; Ma, Hui; Yuan, Zhengquan; Song, Hongbin |
2015 |
2015-09-04 |
COMM-USE |
N |
PMC4559894 |
26338697.0 |
10.1038/srep13617 |
gqnsg2en |
0.603695 |
|
Agoti_2017 |
| 5 |
Niehus_2020 |
Quantifying bias of COVID-19 prevalence and severity estimates in Wuhan, China that depend on reported cases in international travelers |
Rene Niehus; Pablo M De Salazar; Aimee Taylor; Marc Lipsitch |
2020 |
2020-02-14 |
BioRxiv |
Y |
|
|
10.1101/2020.02.13.20022707 |
h0h0d93t |
0.585627 |
|
Niehus_2020, Virlogeux_2016 |
| 6 |
Nishiura_2020 |
Initial Cluster of Novel Coronavirus (2019-nCoV) Infections in Wuhan, China Is Consistent with Substantial Human-to-Human Transmission |
Nishiura, Hiroshi; Linton, Natalie M.; Akhmetzhanov, Andrei R. |
2020 |
2020-01-01 |
COMM-USE |
Y |
PMC7073724 |
32054045.0 |
10.3390/jcm9020488 |
z9dolxky |
0.572166 |
|
|
| 7 |
Thompson_2020 |
2019-20 Wuhan coronavirus outbreak: Intense surveillance is vital for preventing sustained transmission in new locations |
R.N. Thompson |
2020 |
2020-01-25 |
BioRxiv |
Y |
|
|
10.1101/2020.01.24.919159 |
qpaig5tm |
0.556312 |
|
Thompson_2020 |
| 8 |
Pinotti_2020 |
Lessons learnt from 288 COVID-19 international cases: importations over time, effect of interventions, underdetection of imported cases |
Francesco Pinotti; Laura Di Domenico; Ernesto Ortega; Marco Mancastroppa; Giulia Pullano; Eugenio Valdano; Pierre-Yves Boelle; Chiara Poletto; Vittoria Colizza |
2020 |
2020-02-25 |
BioRxiv |
N |
|
|
10.1101/2020.02.24.20027326 |
ad3tct5b |
0.551581 |
|
Yuan_2020, Robert_2020, Poletto_2016 |
| 9 |
Fauver_2020 |
Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology |
Joseph R Fauver; Mary E. Petrone; Emma B Hodcroft; Kayoko Shioda; Hanna Y Ehrlich; Alexander G. Watts; Chantal B.F. Vogels; Anderson F. Brito; Tara Alpert; Anthony Muyombwe; Jafar Razeq; Randy Downing; Nagarjuna R. Cheemarla; Anne L Wyllie; Chaney C. Kalinich; Isabel Ott; Josh Quick; Nicholas J. Loman; Karla M. Neugebauer; Alexander L. Greninger; Keith R. Jerome; Pavitra Roychoundhury; Hong Xie; Lasata Shrestha; Meei-Li Huang; Virginia E. Pitzer; Akiko Iwasaki; Saad B. Omer; Kamran Khan; Isaac Bogoch; Richard A. Martinello; Ellen F. Foxman; Marie-Louise Landry; Richard A Neher; Albert I Ko; Nathan D. Grubaugh |
2020 |
2020-03-26 |
BioRxiv |
Y |
|
|
10.1101/2020.03.25.20043828 |
8m06zdho |
0.548997 |
|
Deng_2020 |
| 10 |
Robert_2020 |
Probabilistic reconstruction of measles transmission clusters from routinely collected surveillance data |
Alexis Robert; Adam J Kucharski; Paul A Gastañaduy; Prabasaj Paul; Sebastian Funk |
2020 |
2020-02-15 |
BioRxiv |
N |
|
|
10.1101/2020.02.13.20020891 |
z8ix4kz7 |
0.532104 |
|
Routledge_2020, Routledge_2019, Bitzegeio_2020 |
| 11 |
Niehus_2020 |
Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China |
Niehus, Rene; De Salazar, Pablo M; Taylor, Aimee R; Lipsitch, Marc |
2020 |
2020-04-01 |
PMC |
Y |
|
|
10.1016/s1473-3099(20)30229-2 |
lt6y0z0w |
0.524637 |
|
|
| 12 |
Thompson_2020 |
Novel Coronavirus Outbreak in Wuhan, China, 2020: Intense Surveillance Is Vital for Preventing Sustained Transmission in New Locations |
Thompson, Robin N. |
2020 |
2020-01-01 |
COMM-USE |
Y |
PMC7073840 |
32054124.0 |
10.3390/jcm9020498 |
bim76jna |
0.518255 |
|
Thompson_2020 |
| 13 |
Chen_2007 |
Incorporating Geographical Contacts into Social Network Analysis for Contact Tracing in Epidemiology: A Study on Taiwan SARS Data |
Chen, Yi-Da; Tseng, Chunju; King, Chwan-Chuen; Wu, Tsung-Shu Joseph; Chen, Hsinchun |
2007 |
2007-01-01 |
PMC |
N |
PMC7122638 |
|
10.1007/978-3-540-72608-1_3 |
og0b2l6b |
0.480464 |
|
|
| 14 |
Poletto_2016 |
Quantifying spatiotemporal heterogeneity of MERS-CoV transmission in the Middle East region: A combined modelling approach |
Poletto, Chiara; Colizza, Vittoria; Boëlle, Pierre-Yves |
2016 |
2016-06-30 |
PMC |
N |
PMC7104927 |
27266844.0 |
10.1016/j.epidem.2015.12.001 |
qejtarkd |
0.468922 |
Blumberg_2020 |
Routledge_2019, Kretzschmar_2020 |
| 15 |
Brynildsrud_2020 |
High COVID-19 incidence among Norwegian travellers returned from Lombardy: implications for travel restrictions |
Ola Brynildsrud; Vegard Eldholm |
2020 |
2020-03-23 |
BioRxiv |
Y |
|
|
10.1101/2020.03.20.20038406 |
3wegrnyn |
0.445900 |
|
Yuan_2020 |
| 16 |
Xiao_2017 |
Role of fomites in SARS transmission during the largest hospital outbreak in Hong Kong |
Xiao, Shenglan; Li, Yuguo; Wong, Tze-wai; Hui, David S. C. |
2017 |
2017-07-20 |
COMM-USE |
N |
PMC5519164 |
28727803.0 |
10.1371/journal.pone.0181558 |
8rfm0jxh |
0.445126 |
|
Yuan_2020 |
| 17 |
Sun_H_2020 |
Estimating number of global importations of COVID-19 from Wuhan, risk of transmission outside mainland China and COVID-19 introduction index between countries outside mainland China |
Haoyang Sun; Borame Lee Dickens; Mark Chen; Alex Richard Cook; Hannah Eleanor Clapham |
2020 |
2020-02-20 |
BioRxiv |
Y |
|
|
10.1101/2020.02.17.20024075 |
2w3bx6p8 |
0.444211 |
|
Yuan_2020 |
| 18 |
Shearer_2020 |
Assessing the risk of spread of COVID-19 to the Asia Pacificregion |
Freya Shearer; James Walker; Nefel Tellioglu; James M McCaw; Jodie McVernon; Andrew Black; Nicholas Geard |
2020 |
2020-04-11 |
BioRxiv |
Y |
|
|
10.1101/2020.04.09.20057257 |
v48mz21d |
0.426728 |
|
Yuan_2020, Nishiura_2007 |
| 19 |
Agoti_2017 |
Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis |
Agoti, Charles N.; Munywoki, Patrick K.; Phan, My V. T.; Otieno, James R.; Kamau, Everlyn; Bett, Anne; Kombe, Ivy; Githinji, George; Medley, Graham F.; Cane, Patricia A.; Kellam, Paul; Cotten, Matthew; Nokes, D. James |
2017 |
2017-03-11 |
COMM-USE |
N |
PMC5399923 |
28458916.0 |
10.1093/ve/vex006 |
aq3ho77b |
0.422659 |
|
|
| 20 |
Mizumoto_2020 |
Transmissibility of 2019 Novel Coronavirus: zoonotic vs. human to human transmission, China, 2019-2020 |
Kenji Mizumoto; Katsushi Kagaya; Gerardo Chowell |
2020 |
2020-03-20 |
BioRxiv |
Y |
|
|
10.1101/2020.03.16.20037036 |
s4ef9qob |
0.419260 |
|
Chinazzi_2020 |
| 21 |
Chang_2020 |
Modeling the impact of human mobility and travel restrictions on the potential spread of SARS-CoV-2 in Taiwan |
Meng-Chun Chang; Rebecca Kahn; Yu-An Li; Cheng-Sheng Lee; Caroline O Buckee; Hsiao-Han Chang |
2020 |
2020-04-11 |
BioRxiv |
Y |
|
|
10.1101/2020.04.07.20053439 |
7vh5ipro |
0.407149 |
|
Liu_H_2020, Kraemer_2020 |
| 22 |
Liang_2007 |
Hindsight: A re-analysis of the severe acute respiratory syndrome outbreak in Beijing |
Liang, W.; McLaws, M.-L.; Liu, M.; Mi, J.; Chan, D.K.Y. |
2007 |
2007-10-31 |
PMC |
N |
PMC7111616 |
17555781.0 |
10.1016/j.puhe.2007.02.023 |
s9y11oep |
0.405486 |
|
|
| 23 |
Pullano_2020 |
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020 |
Pullano, Giulia; Pinotti, Francesco; Valdano, Eugenio; Boëlle, Pierre-Yves; Poletto, Chiara; Colizza, Vittoria |
2020 |
2020-01-30 |
COMM-USE |
Y |
PMC7001240 |
32019667.0 |
10.2807/1560-7917.es.2020.25.4.2000057 |
332ey2v1 |
0.383545 |
|
|
| 24 |
Toth_2015 |
Estimates of Outbreak Risk from New Introductions of Ebola with Immediate and Delayed Transmission Control |
Toth, Damon J.A.; Gundlapalli, Adi V.; Khader, Karim; Pettey, Warren B.P.; Rubin, Michael A.; Adler, Frederick R.; Samore, Matthew H. |
2015 |
2015-08-23 |
None |
N |
PMC4517734 |
26196264.0 |
10.3201/eid2108.150170 |
gl2gbqi9 |
0.380810 |
|
Yuan_2020 |
| 25 |
Roy_S_2020 |
COVID-19 pandemic: Impact of lockdown, contact and non-contact transmissions on infection dynamics |
Shovonlal Roy |
2020 |
2020-04-07 |
BioRxiv |
Y |
|
|
10.1101/2020.04.04.20050328 |
61ta81iy |
0.373970 |
|
Kretzschmar_2020, Yuan_2020 |
| 26 |
Leavitt_2019 |
Estimating the Relative Probability of Direct Transmission between Infectious Disease Patients |
Sarah V Leavitt; Robyn S Lee; Paola Sebastiani; Charles R. Horsburgh; Helen E Jenkins; Laura F White |
2019 |
2019-04-26 |
BioRxiv |
N |
|
|
10.1101/612945 |
xhffsa77 |
0.373473 |
|
Robert_2020 |
| 27 |
Bitzegeio_2020 |
Two measles clusters in connection with short inner-European air travels indicating impediments to effective measles control: A cluster analysis |
Bitzegeio, Julia; Bukowski, Britta; Hausner, Marius; Sissolak, Dagmar; Rasmussen, Lasse D.; Andersen, Peter H.; Katz, Katharina; Englund, Hélène; Hagstam, Per; Sagebiel, Daniel; Werber, Dirk |
2020 |
2020-02-29 |
PMC |
N |
PMC7110584 |
31786281.0 |
10.1016/j.tmaid.2019.101542 |
qmh9l7qy |
0.371479 |
|
Otomaru_2019, Robert_2020 |
| 28 |
Choi_2015 |
Epidemiological investigation of the 119th confirmed Middle East Respiratory Syndrome coronavirus case with an indefinite mode of transmission during the Pyeongtaek outbreak in Korea |
Choi, Jong Hyuk; Yoo, Byoungin; Lee, Soon Young; Lee, Eun Gyu; Ki, Moran; Lee, Woncheol; Jung, Jong Rak; Chang, Kyujin |
2015 |
2015-12-10 |
COMM-USE |
N |
PMC4789606 |
26971695.0 |
10.4178/epih/e2015054 |
nj5w6eb1 |
0.368561 |
|
Park_2016 |
| 29 |
Wembri_2008 |
Severe Infections in the Returning Traveler |
Wembri, Jacob P.; Schmid, Matthias L. |
2008 |
2008-01-01 |
PMC |
N |
PMC7122235 |
|
10.1007/978-1-84628-939-2_9 |
59gzz4ke |
0.345695 |
|
|
| 30 |
Little_2014 |
Using HIV Networks to Inform Real Time Prevention Interventions |
Little, Susan J.; Kosakovsky Pond, Sergei L.; Anderson, Christy M.; Young, Jason A.; Wertheim, Joel O.; Mehta, Sanjay R.; May, Susanne; Smith, Davey M. |
2014 |
2014-06-05 |
COMM-USE |
N |
PMC4047027 |
24901437.0 |
10.1371/journal.pone.0098443 |
yxne28f0 |
0.330423 |
|
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| 31 |
Schneider_2015 |
Evaluation of Patients under Investigation for MERS-CoV Infection, United States, January 2013–October 2014 |
Schneider, Eileen; Chommanard, Christina; Rudd, Jessica; Whitaker, Brett; Lowe, Luis; Gerber, Susan I. |
2015 |
2015-07-23 |
PMC |
N |
PMC4480388 |
26079433.0 |
10.3201/eid2107.141888 |
86smbov4 |
0.320289 |
|
|
| 32 |
Hegde_2016 |
Investigating Rare Risk Factors for Nipah Virus in Bangladesh: 2001–2012 |
Hegde, Sonia T.; Sazzad, Hossain M. S.; Hossain, M. Jahangir; Alam, Mahbub-Ul; Kenah, Eben; Daszak, Peter; Rollin, Pierre; Rahman, Mahmudur; Luby, Stephen P.; Gurley, Emily S. |
2016 |
2016-10-13 |
PMC |
N |
PMC5164848 |
27738775.0 |
10.1007/s10393-016-1166-0 |
jw20mrcy |
0.316697 |
|
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| 33 |
Sekizuka_2020 |
Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak |
Tsuyoshi Sekizuka; Kentaro Itokawa; Tsutomu Kageyama; Shinji Saito; Ikuyo Takayama; Hideki Asanuma; Nao Naganori; Rina Tanaka; Masanori Hashino; Takuri Takahashi; Hajime Kamiya; Takuya Yamagishi; Kensaku Kakimoto; Motoi Suzuki; Hideki Hasegawa; Takaji Wakita; Makoto Kuroda |
2020 |
2020-03-27 |
BioRxiv |
Y |
|
|
10.1101/2020.03.23.20041970 |
7vuejy26 |
0.314630 |
|
Deng_2020 |
| 34 |
Che_X_2006 |
A Patient with Asymptomatic Severe Acute Respiratory Syndrome (SARS) and Antigenemia from the 2003–2004 Community Outbreak of SARS in Guangzhou, China |
Che, Xiao-yan; Di, Biao; Zhao, Guo-ping; Wang, Ya-di; Qiu, Li-wen; Hao, Wei; Wang, Ming; Qin, Peng-zhe; Liu, Yu-fei; Chan, Kwok-hong; Cheng, Vincent C. C.; Yuen, Kwok-yung |
2006 |
2006-07-01 |
PMC |
N |
PMC7108013 |
16758408.0 |
10.1086/504943 |
8670s4st |
0.314275 |
|
Park_2016 |
| 35 |
Deng_2020 |
A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage |
Xianding Deng; Wei Gu; Scot Federman; Louis Du Plessis; Oliver Pybus; Nuno Faria; Candace Wang; Guixia Yu; Chao-Yang Pan; Hugo Guevara; Alicia Sotomayor-Gonzalez; Kelsey Zorn; Allan Gopez; Venice Servellita; Elaine Hsu; Steve Miller; Trevor Bedford; Alexander Greninger; Pavitra Roychoudhury; Michael Famulare; Helen Y Chu; Jay Shendure; Lea Starita; Catie Anderson; Karthik Gangavarapu; Mark Zeller; Emily Spencer; Kristian Andersen; Duncan MacCannell; Suxiang Tong; Gregory Armstrong; Clinton Paden; Yan Li; Ying Zhang; Scott Morrow; Matthew Willis; Bela Matyas; Sundari Mase; Olivia Kasirye; Maggie Park; Curtis Chan; Alexander Yu; Shua Chai; Elsa Villarino; Brandon Bonin; Debra Wadford; Charles Y Chiu |
2020 |
2020-03-30 |
BioRxiv |
Y |
|
|
10.1101/2020.03.27.20044925 |
cbc98t7x |
0.309383 |
|
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| 36 |
Grubaugh_2018 |
International travelers and genomics uncover a ‘hidden’ Zika outbreak |
Nathan D. Grubaugh; Sharada Saraf; Karthik Gangavarapu; Alexander Watts; Amanda L. Tan; Rachel J. Oidtman; Jason T. Ladner; Glenn Oliveira; Nathaniel L. Matteson; Moritz U.G. Kraemer; Chantal B.F. Vogels; Aaron Hentoff; Deepit Bhatia; Danielle Stanek; Blake Scott; Vanessa Landis; Ian Stryker; Marshall R. Cone; Edgar W. Kopp; Andrew C. Cannons; Lea Heberlein-Larson; Stephen White; Leah D. Gillis; Michael J. Ricciardi; Jaclyn Kwal; Paola K. Lichtenberger; Diogo M. Magnani; David I. Watkins; Gustavo Palacios; Davidson H. Hamer; Lauren M. Gardner; T. Alex Perkins; Guy Baele; Kamran Khan; Andrea Morrison; Sharon Isern; Scott F. Michael; Kristian G. Andersen |
2018 |
2018-12-14 |
BioRxiv |
N |
|
|
10.1101/496901 |
lh6zul8l |
0.308356 |
|
Grubaugh_2019 |
| 37 |
Wilder-Smith_2006 |
Experience of Severe Acute Respiratory Syndrome in Singapore: Importation of Cases, and Defense Strategies at the Airport |
Wilder-Smith, Annelies; Goh, Kee Tai; Paton, Nicholas I |
2006 |
2006-03-08 |
PMC |
N |
PMC7107530 |
14531977.0 |
10.2310/7060.2003.2676 |
qz9msrl7 |
0.305356 |
|
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| 38 |
Lee_S_2015 |
Probable transmission chains of Middle East respiratory syndrome coronavirus and the multiple generations of secondary infection in South Korea |
Lee, Shui Shan; Wong, Ngai Sze |
2015 |
2015-09-30 |
PMC |
N |
PMC7110481 |
26216766.0 |
10.1016/j.ijid.2015.07.014 |
65s09sk5 |
0.304959 |
|
Park_2016 |