Topic 05 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 26 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Nishiura_2020 Serial interval of novel coronavirus (2019-nCoV) infections Hiroshi Nishiura; Natalie M Linton; Andrei R. Akhmetzhanov 2020 2020-02-13 BioRxiv Y 10.1101/2020.02.03.20019497 vspnuxz9 0.911635 Nishiura_2020, Xia_W_2020
2 Nishiura_2020 Serial interval of novel coronavirus (COVID-19) infections Nishiura, Hiroshi; Linton, Natalie M.; Akhmetzhanov, Andrei R. 2020 2020-01-01 None Y 32145466.0 10.1016/j.ijid.2020.02.060 8n4vklsf 0.906227 Nishiura_2020, Xia_W_2020
3 Linton_2020 Incubation Period and Other Epidemiological Characteristics of 2019 Novel Coronavirus Infections with Right Truncation: A Statistical Analysis of Publicly Available Case Data Linton, M. Natalie; Kobayashi, Tetsuro; Yang, Yichi; Hayashi, Katsuma; Akhmetzhanov, R. Andrei; Jung, Sung-mok; Yuan, Baoyin; Kinoshita, Ryo; Nishiura, Hiroshi 2020 2020-01-01 COMM-USE Y PMC7074197 32079150.0 10.3390/jcm9020538 4vrqzbof 0.785235 Linton_2020 Linton_2020, Xia_W_2020, Jing_2020, Ma_S_2020
4 Jing_2020 Estimation of incubation period distribution of COVID-19 using disease onset forward time: a novel cross-sectional and forward follow-up study Qin Jing; Chong You; Qiushi Lin; Taojun Hu; Shicheng Yu; Xiao-Hua Zhou 2020 2020-03-10 BioRxiv Y 10.1101/2020.03.06.20032417 it4ka7v0 0.784638 Linton_2020, Xia_W_2020, Nishiura_2007, Linton_2020
5 Linton_2020 Incubation Period and Other Epidemiological Characteristics of 2019 Novel Coronavirus Infections with Right Truncation: A Statistical Analysis of Publicly Available Case Data Natalie M. Linton; Tetsuro Kobayashi; Yichi Yang; Katsuma Hayashi; Andrei R. Akhmetzhanov; Sung-mok Jung; Baoyin Yuan; Ryo Kinoshita; Hiroshi Nishiura 2020 2020-01-28 BioRxiv Y 10.1101/2020.01.26.20018754 ykofrn9i 0.716322 Linton_2020 Linton_2020, Xia_W_2020, Jing_2020
6 Xia_W_2020 Transmission of corona virus disease 2019 during the incubation period may lead to a quarantine loophole Wei Xia; Jiaqiang Liao; Chunhui Li; Yuanyuan Li; Xi Qian; Xiaojie Sun; Hongbo Xu; Gaga Mahai; Xin Zhao; Lisha Shi; Juan Liu; Ling Yu; Meng Wang; Qianqian Wang; Asmagvl Namat; Ying Li; Jingyu Qu; Qi Liu; Xiaofang Lin; Shuting Cao; Shu Huan; Jiying Xiao; Fengyu Ruan; Hanjin Wang; Qing Xu; Xingjuan Ding; Xingjie Fang; Feng Qiu; Jiaolong Ma; Yu Zhang; Aizhen Wang; Yuling Xing; Shunqing Xu 2020 2020-03-08 BioRxiv Y 10.1101/2020.03.06.20031955 v3gww4iv 0.698112 Linton_2020, McBryde_2006
7 Backer_2020 The incubation period of 2019-nCoV infections among travellers from Wuhan, China Jantien A. Backer; Don Klinkenberg; Jacco Wallinga 2020 2020-01-28 BioRxiv Y 10.1101/2020.01.27.20018986 u8goc7io 0.629573 Backer_2020 Xia_W_2020, Backer_2020, Ping_2020
8 Yang_2017 Estimating the incubation period of hand, foot and mouth disease for children in different age groups Yang, Zhongzhou; Zhang, Qiqi; Cowling, Benjamin J.; Lau, Eric H. Y. 2017 2017-11-28 COMM-USE N PMC5705633 29184105.0 10.1038/s41598-017-16705-7 gkvmjozy 0.629339 Cowling_2008
9 Tindale_2020 Transmission interval estimates suggest pre-symptomatic spread of COVID-19 Lauren Tindale; Michelle Coombe; Jessica E Stockdale; Emma Garlock; Wing Yin Venus Lau; Manu Saraswat; Yen-Hsiang Brian Lee; Louxin Zhang; Dongxuan Chen; Jacco Wallinga; Caroline Colijn 2020 2020-03-06 BioRxiv Y 10.1101/2020.03.03.20029983 66ulqu11 0.629100 Muniz-Rodriguez_2020 Xia_W_2020, Yuan_2020, Li_M_2020
10 Omori_2020 Ascertainment rate of novel coronavirus disease (COVID-19) in Japan Ryosuke Omori; Kenji Mizumoto; Hiroshi Nishiura 2020 2020-03-10 BioRxiv Y 10.1101/2020.03.09.20033183 0d6o5w8z 0.609710
11 McBryde_2006 Bayesian modelling of an epidemic of severe acute respiratory syndrome McBryde, E. S.; Gibson, G.; Pettitt, A. N.; Zhang, Y.; Zhao, B.; McElwain, D. L. S. 2006 2006-04-08 PMC N PMC7089340 16802088.0 10.1007/s11538-005-9005-4 hd079dox 0.600096 Virlogeux_2016
12 Muniz-Rodriguez_2020 Transmission potential of COVID-19 in Iran Kamalich Muniz-Rodriguez; Isaac Chun-Hai Fung; Shayesterh R. Ferdosi; Sylvia K. Ofori; Yiseul Lee; Amna Tariq; Gerardo Chowell 2020 2020-03-10 BioRxiv Y 10.1101/2020.03.08.20030643 uq4eobf0 0.576530 He_X_2020
13 Ma_S_2020 Epidemiological parameters of coronavirus disease 2019: a pooled analysis of publicly reported individual data of 1155 cases from seven countries Shujuan Ma; Jiayue Zhang; Minyan Zeng; Qingping Yun; Wei Guo; Yixiang Zheng; Shi Zhao; Maggie H Wang; Zuyao Yang 2020 2020-03-24 BioRxiv Y 10.1101/2020.03.21.20040329 56zhxd6e 0.569781 Xia_W_2020
14 Cowling_2009 Estimation of the serial interval of influenza Cowling, Benjamin J.; Fang, Vicky J.; Riley, Steven; Peiris, J. S. Malik; Leung, Gabriel M. 2009 2009-05-01 PMC N PMC3057478 19279492.0 10.1097/ede.0b013e31819d1092 fdyzfnw5 0.560474 Nishiura_2007
15 Kuk_A_2005 The estimation of SARS incubation distribution from serial interval data using a convolution likelihood Kuk, Anthony Y. C.; Ma, Stefan 2005 2005-07-12 PMC N PMC7169530 16013037.0 10.1002/sim.2123 yaii6e16 0.550464 Black_2013
16 Han_Y_2020 COVID-19 in a patient with long-term use of glucocorticoids: A study of a familial cluster Han, Yuanyuan; Jiang, Mao; Xia, Da; He, Lichao; Lv, Xin; Liao, Xiaohua; Meng, Jie 2020 2020-05-31 PMC Y 10.1016/j.clim.2020.108413 9jatvium 0.547226 Lauro_2020, Bae_J_2020
17 Li_Q_2020 Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia Li, Qun; Guan, Xuhua; Wu, Peng; Wang, Xiaoye; Zhou, Lei; Tong, Yeqing; Ren, Ruiqi; Leung, Kathy S.M.; Lau, Eric H.Y.; Wong, Jessica Y.; Xing, Xuesen; Xiang, Nijuan; Wu, Yang; Li, Chao; Chen, Qi; Li, Dan; Liu, Tian; Zhao, Jing; Liu, Man; Tu, Wenxiao; Chen, Chuding; Jin, Lianmei; Yang, Rui; Wang, Qi; Zhou, Suhua; Wang, Rui; Liu, Hui; Luo, Yinbo; Liu, Yuan; Shao, Ge; Li, Huan; Tao, Zhongfa; Yang, Yang; Deng, Zhiqiang; Liu, Boxi; Ma, Zhitao; Zhang, Yanping; Shi, Guoqing; Lam, Tommy T.Y.; Wu, Joseph T.; Gao, George F.; Cowling, Benjamin J.; Yang, Bo; Leung, Gabriel M.; Feng, Zijian 2020 2020-03-26 None Y PMC7121484 31995857.0 10.1056/nejmoa2001316 e9rt7z8d 0.534888 Xia_W_2020
18 Khosravi_2020 The basic reproduction number and prediction of the epidemic size of the novel coronavirus (COVID-19) in Shahroud, Iran Ahmad Khosravi; Reza Chaman; Marzieh Rohani-Rasaf; Fariba Zare; Shiva Mehravaran; Mohammad Hassan Emamian 2020 2020-04-08 BioRxiv Y 10.1101/2020.04.04.20052308 36fbcobw 0.527890
19 Cai_Q_2006 Refined Estimate of the Incubation Period of Severe Acute Respiratory Syndrome and Related Influencing Factors Cai, Quan-Cai; Xu, Qin-Feng; Xu, Jian-Ming; Guo, Qiang; Cheng, Xiang; Zhao, Gen-Ming; Sun, Qing-Wen; Lu, Jian; Jiang, Qing-Wu 2006 2006-02-01 PMC N PMC7109871 16339050.0 10.1093/aje/kwj034 4h9j9bw2 0.522023 Nishiura_2007, ZENG_2009
20 He_X_2020 Temporal dynamics in viral shedding and transmissibility of COVID-19 Xi He; Eric HY Lau; Peng Wu; Xilong Deng; Jian Wang; Xinxin Hao; Yiu Chung Lau; Jessica Y Wong; Yujuan Guan; Xinghua Tan; Xiaoneng Mo; Yanqing Chen; Baolin Liao; Weilie Chen; Fengyu Hu; Qing Zhang; Mingqiu Zhong; Yanrong Wu; Lingzhai Zhao; Fuchun Zhang; Benjamin J Cowling; Fang Li; Gabriel M Leung 2020 2020-03-18 BioRxiv Y 10.1101/2020.03.15.20036707 eflwztji 0.494657 Li_P_2020
21 Leung_2020 The difference in the incubation period of 2019 novel coronavirus (SARS-CoV-2) infection between travelers to Hubei and non-travelers: The need of a longer quarantine period Leung, Char 2020 2020-03-18 PMC N PMC7137532 32183920.0 10.1017/ice.2020.81 n0vmb946 0.488220 Li_P_2020, Xia_W_2020
22 Jiang_2020 Is a 14-day quarantine period optimal for effectively controlling coronavirus disease 2019 (COVID-19)? Xue Jiang; Yawei Niu; Xiong Li; Lin Li; Wenxiang Cai; Yucan Chen; Bo Liao; Edwin Wang 2020 2020-03-18 BioRxiv Y 10.1101/2020.03.15.20036533 djq0lvr2 0.481269 Chowell_2020, Cowling_2008 Xia_W_2020
23 Ping_2020 Epidemiologic Characteristics of COVID-19 in Guizhou, China Kaike Ping 2020 2020-03-06 BioRxiv Y 10.1101/2020.03.01.20028944 tne83uu0 0.480902 Xia_W_2020
24 Zhang_2020 Estimating the presymptomatic transmission of COVID19 using incubation period and serial interval data Weituo Zhang 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.02.20051318 nkhjona0 0.468379 Li_P_2020
25 Black_2013 Estimating a Markovian Epidemic Model Using Household Serial Interval Data from the Early Phase of an Epidemic Black, Andrew J.; Ross, Joshua V. 2013 2013-08-30 None N PMC3758268 24023679.0 10.1371/journal.pone.0073420 ecxcw96m 0.466707
26 Backer_2020 Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20–28 January 2020 Backer, Jantien A; Klinkenberg, Don; Wallinga, Jacco 2020 2020-02-06 None Y PMC7014672 32046819.0 10.2807/1560-7917.es.2020.25.5.2000062 jat60k8t 0.464062 Backer_2020 Xia_W_2020, Backer_2020
27 Nishiura_2007 Early efforts in modeling the incubation period of infectious diseases with an acute course of illness Nishiura, Hiroshi 2007 2007-05-11 None N PMC1884151 17466070.0 10.1186/1742-7622-4-2 5u0i6kue 0.458040 Jing_2020, Xia_W_2020, Linton_2020
28 Park_2016 Epidemiologic Parameters of the Middle East Respiratory Syndrome Outbreak in Korea, 2015 Park, Sun Hee; Kim, Woo Joo; Yoo, Jin-Hong; Choi, Jung-Hyun 2016 2016-06-30 NONCOMM N PMC4945720 27433381.0 10.3947/ic.2016.48.2.108 pckii4vh 0.446845 Muniz-Rodriguez_2020, McBryde_2006
29 Donnelly_2003 Epidemiological determinants of spread of causal agent of severe acute respiratory syndrome in Hong Kong Donnelly, Christl A; Ghani, Azra C; Leung, Gabriel M; Hedley, Anthony J; Fraser, Christophe; Riley, Steven; Abu-Raddad, Laith J; Ho, Lai-Ming; Thach, Thuan-Quoc; Chau, Patsy; Chan, King-Pan; Lam, Tai-Hing; Tse, Lai-Yin; Tsang, Thomas; Liu, Shao-Haei; Kong, James HB; Lau, Edith MC; Ferguson, Neil M; Anderson, Roy M 2003 2003-05-24 PMC N PMC7112380 12781533.0 10.1016/s0140-6736(03)13410-1 7ocseuz3 0.432353
30 Li_M_2020 Transmission characteristics of the COVID-19 outbreak in China: a study driven by data Meili Li; Pian Chen; Qianqian Yuan; Baojun Song; Junling Ma 2020 2020-03-01 BioRxiv Y 10.1101/2020.02.26.20028431 px0twvhs 0.408765 Xia_W_2020, Yuan_2020, Kretzschmar_2020
31 Zhang_2020 Evolving epidemiology of novel coronavirus diseases 2019 and possible interruption of local transmission outside Hubei Province in China: a descriptive and modeling study Juanjuan Zhang; Maria Litvinova; Wei Wang; Yan Wang; Xiaowei Deng; Xinghui Chen; Mei Li; Wen Zheng; Lan Yi; Xinhua Chen; Qianhui Wu; Yuxia Liang; Xiling Wang; Juan Yang; Kaiyuan Sun; Ira M. Longini; M. Elizabeth Halloran; Peng Wu; Benjamin J. Cowling; Stefano Merler; Cecile Viboud; Alessandro Vespignani; Marco Ajelli; Hongjie Yu 2020 2020-02-23 BioRxiv Y 10.1101/2020.02.21.20026328 ragcpbl6 0.400984 Zhang_2020
32 Zhao_2020 Analysis of the epidemic growth of the early 2019-nCoV outbreak using internationally confirmed cases Qingyuan Zhao; Yang Chen; Dylan S Small 2020 2020-02-09 BioRxiv Y 10.1101/2020.02.06.20020941 ra3t6kmm 0.395055 Xia_W_2020, Tang_2020
33 Harris_2013 Does spatial proximity drive norovirus transmission during outbreaks in hospitals? Harris, John P; Lopman, Ben A; Cooper, Ben S; O'Brien, Sarah J 2013 2013-07-12 None N PMC3710976 23852138.0 10.1136/bmjopen-2013-003060 2rvdedui 0.383299 Robert_2020
34 Virlogeux_2016 Comparison of incubation period distribution of human infections with MERS-CoV in South Korea and Saudi Arabia Virlogeux, Victor; Fang, Vicky J.; Park, Minah; Wu, Joseph T.; Cowling, Benjamin J. 2016 2016-10-24 COMM-USE N PMC5075793 27775012.0 10.1038/srep35839 vt2jhdeb 0.376519
35 Cousien_2019 Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015–2016 Cousien, Anthony; Abel, Sylvie; Monthieux, Alice; Andronico, Alessio; Calmont, Isabelle; Cervantes, Minerva; Césaire, Raymond; Gallian, Pierre; de Lamballerie, Xavier; Laouénan, Cédric; Najioullah, Fatiha; Pierre-François, Sandrine; Pircher, Mathilde; Salje, Henrik; ten Bosch, Quirine A; Cabié, André; Cauchemez, Simon 2019 2019-04-17 None N PMC6601520 30995296.0 10.1093/aje/kwz091 a2m0mdd1 0.375472 Otomaru_2019
36 Prakash_2020 Community Memory of COVID-19 Infections Post Lockdown as a Surrogate for Incubation Time Meher K Prakash 2020 2020-04-20 BioRxiv N 10.1101/2020.04.15.20067058 4iwyjk8n 0.368925 Lauro_2020
37 Cheng_2020 High transmissibility of COVID-19 near symptom onset Hao-Yuan Cheng; Shu-Wan Jian; Ding-Ping Liu; Ta-Chou Ng; Wan-Ting Huang; Hsien-Ho Lin 2020 2020-03-19 BioRxiv Y 10.1101/2020.03.18.20034561 xsqgrd5l 0.354306 Muniz-Rodriguez_2020 Xia_W_2020, Wang_2020
38 Lauer_2020 The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application Lauer, Stephen A.; Grantz, Kyra H.; Bi, Qifang; Jones, Forrest K.; Zheng, Qulu; Meredith, Hannah R.; Azman, Andrew S.; Reich, Nicholas G.; Lessler, Justin 2020 2020-03-10 PMC Y PMC7081172 32150748.0 10.7326/m20-0504 8anqfkmo 0.351719 Xia_W_2020
39 Bae_J_2020 A Chinese Case of Coronavirus Disease 2019 (COVID-19) Did Not Show Infectivity During the Incubation Period: Based on an Epidemiological Survey Bae, Jong-Myon 2020 2020-03-02 NONCOMM Y PMC7142009 32114755.0 10.3961/jpmph.20.048 slapc5xt 0.345257 Xia_W_2020, Li_P_2020, Yu_P_2020
40 Zhang_2020 Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study Zhang, Juanjuan; Litvinova, Maria; Wang, Wei; Wang, Yan; Deng, Xiaowei; Chen, Xinghui; Li, Mei; Zheng, Wen; Yi, Lan; Chen, Xinhua; Wu, Qianhui; Liang, Yuxia; Wang, Xiling; Yang, Juan; Sun, Kaiyuan; Longini, Ira M; Halloran, M Elizabeth; Wu, Peng; Cowling, Benjamin J; Merler, Stefano; Viboud, Cecile; Vespignani, Alessandro; Ajelli, Marco; Yu, Hongjie 2020 2020-04-02 PMC Y 10.1016/s1473-3099(20)30230-9 ur7tu7g1 0.340941 Zhang_2020, Xia_W_2020
41 Mizumoto_2020 Estimating the Asymptomatic Proportion of 2019 Novel Coronavirus onboard the Princess Cruises Ship, 2020 Kenji Mizumoto; Katsushi Kagaya; Alexander Zarebski; Gerardo Chowell 2020 2020-02-23 BioRxiv Y 10.1101/2020.02.20.20025866 atnz63pk 0.330405 Mizumoto_2020
42 Zhao_2020 COVID-19 and gender-specific difference: Analysis of public surveillance data in Hong Kong and Shenzhen, China, from January 10 to February 15, 2020 Zhao, Shi; Cao, Peihua; Chong, Marc K.C.; Gao, Daozhou; Lou, Yijun; Ran, Jinjun; Wang, Kai; Wang, Weiming; Yang, Lin; He, Daihai; Wang, Maggie H. 2020 2020-03-09 PMC Y PMC7113032 32146921.0 10.1017/ice.2020.64 1mchg5yg 0.329222 Ping_2020
43 Xu_B_2020 Epidemiological data from the COVID-19 outbreak, real-time case information Xu, Bo; Gutierrez, Bernardo; Mekaru, Sumiko; Sewalk, Kara; Goodwin, Lauren; Loskill, Alyssa; Cohn, Emily L.; Hswen, Yulin; Hill, Sarah C.; Cobo, Maria M.; Zarebski, Alexander E.; Li, Sabrina; Wu, Chieh-Hsi; Hulland, Erin; Morgan, Julia D.; Wang, Lin; O’Brien, Katelynn; Scarpino, Samuel V.; Brownstein, John S.; Pybus, Oliver G.; Pigott, David M.; Kraemer, Moritz U. G. 2020 2020-03-24 COMM-USE Y PMC7093412 32210236.0 10.1038/s41597-020-0448-0 l63z3btv 0.316979 Ma_S_2020, Ping_2020, Xia_W_2020
44 Guzzetta_2020 Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020 Guzzetta, Giorgio; Poletti, Piero; Ajelli, Marco; Trentini, Filippo; Marziano, Valentina; Cereda, Danilo; Tirani, Marcello; Diurno, Giulio; Bodina, Annalisa; Barone, Antonio; Crottogini, Lucia; Gramegna, Maria; Melegaro, Alessia; Merler, Stefano 2020 2020-03-26 COMM-USE Y PMC7118340 32234117.0 10.2807/1560-7917.es.2020.25.12.2000293 sga5is3q 0.308265
45 Sanche_2020 The Novel Coronavirus, 2019-nCoV, is Highly Contagious and More Infectious Than Initially Estimated Steven Sanche; Yen Ting Lin; Chonggang Xu; Ethan Romero-Severson; Nick Hengartner; Ruian Ke 2020 2020-02-11 BioRxiv Y 10.1101/2020.02.07.20021154 45g12waw 0.301129