Topic 05 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 11 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Qi_J_2006 A dynamic model for the p53 stress response networks under ion radiation Qi, J.-P.; Shao, S.-H.; Li, D.-D.; Zhou, G.-P. 2006 2006-10-31 PMC N PMC7088058 17072789.0 10.1007/s00726-006-0454-3 krliloi7 0.867788 Qi_J_2009 Qi_J_2009, Jeon_2017
2 Qi_J_2009 Dynamic modeling of cellular response to DNA damage based on p53 stress response networks Qi, Jinpeng; Ding, Yongsheng; Shao, Shihuang 2009 2009-10-10 PMC N PMC7128557 10.1016/j.pnsc.2009.03.008 jz4zb8qp 0.788411 Qi_J_2006, Jang_2019, Choi_2020 Qi_J_2006, Jeon_2017
3 Sacco_2010 Emerging roles of deubiquitinases in cancer‐associated pathways Sacco, Joseph J.; Coulson, Judy M.; Clague, Michael J.; Urbé, Sylvie 2010 2010-01-13 PMC N PMC7165618 20073038.0 10.1002/iub.300 4nb2ow91 0.732942 Rytkönen_2007, Levine_2015, Postigo_2009, Jang_2019
4 Jeon_2017 Interferon-Stimulated Gene 15 in the Control of Cellular Responses to Genotoxic Stress Jeon, Young Joo; Park, Jong Ho; Chung, Chin Ha 2017 2017-02-28 NONCOMM N PMC5339507 28241406.0 10.14348/molcells.2017.0027 w731ehtz 0.724223
5 Zhao_2014 Regulation of TGF-β Signal Transduction Zhao, Bing; Chen, Ye-Guang 2014 2014-09-23 COMM-USE N PMC4190275 25332839.0 10.1155/2014/874065 1ag9mnd2 0.717128 Lin_L_2019, Geijtenbeek_2009 Yan_X_2009
6 Ritchie_2011 Transcriptional Mechanisms Regulating Ca(2+) Homeostasis Ritchie, Michael F.; Zhou, Yandong; Soboloff, Jonathan 2011 2011-05-01 PMC N PMC3225030 21074851.0 10.1016/j.ceca.2010.10.001 nzp0or40 0.702857
7 Al-Hakim_2010 The ubiquitous role of ubiquitin in the DNA damage response Al-Hakim, Abdallah; Escribano-Diaz, Cristina; Landry, Marie-Claude; O’Donnell, Lara; Panier, Stephanie; Szilard, Rachel K.; Durocher, Daniel 2010 2010-12-10 PMC N PMC7105183 21056014.0 10.1016/j.dnarep.2010.09.011 4rrqw18l 0.687329 Rytkönen_2007, Ghosh_2012 Ghosh_2012, Jeon_2017
8 Yang_2020 Targeting cancer stem cell pathways for cancer therapy Yang, Liqun; Shi, Pengfei; Zhao, Gaichao; Xu, Jie; Peng, Wen; Zhang, Jiayi; Zhang, Guanghui; Wang, Xiaowen; Dong, Zhen; Chen, Fei; Cui, Hongjuan 2020 2020-02-07 COMM-USE N PMC7005297 32047658.0 10.1038/s41392-020-0110-5 a3qxwyn6 0.675359 Colegio_2011
9 Kim_Y_2018 Role of extracellular matrix and microenvironment in regulation of tumor growth and LAR-mediated invasion in glioblastoma Kim, Yangjin; Kang, Hyunji; Powathil, Gibin; Kim, Hyeongi; Trucu, Dumitru; Lee, Wanho; Lawler, Sean; Chaplain, Mark 2018 2018-10-04 None N PMC6171904 30286133.0 10.1371/journal.pone.0204865 kk11lja4 0.672840 Singha_2015, Bernardini_2012, Jang_2019, Hertzog_2011, Colegio_2011 Bogenrieder_2002
10 Wang_2014 Cell Polarity: A Key Defence Mechanism Against Infection and Cancer Cell Invasion? Wang, Yihua; Lu, Xin 2014 2014-12-10 PMC N PMC7123024 10.1007/978-3-319-14466-5_7 qgvrnrwq 0.665345 Jang_2019
11 Ghosh_2012 Central Role of Ubiquitination in Genome Maintenance: DNA Replication and Damage Repair Ghosh, Soma; Saha, Tapas 2012 2012-02-08 COMM-USE N PMC4908256 27398234.0 10.5402/2012/146748 l2hs1h9c 0.646996 Rytkönen_2007, Al-Hakim_2010 Nicolas_2016, Jeon_2017
12 Pruitt_2016 Roles of N‐Myc and STAT interactor in cancer: From initiation to dissemination Pruitt, Hawley C.; Devine, Daniel J.; Samant, Rajeev S. 2016 2016-03-11 NONCOMM N PMC5069610 26874464.0 10.1002/ijc.30043 k3vjqumq 0.611648 Rytkönen_2007
13 Krietsch_2013 Reprogramming cellular events by poly(ADP-ribose)-binding proteins Krietsch, Jana; Rouleau, Michèle; Pic, Émilie; Ethier, Chantal; Dawson, Ted M.; Dawson, Valina L.; Masson, Jean-Yves; Poirier, Guy G.; Gagné, Jean-Philippe 2013 2013-12-31 None N PMC3812366 23268355.0 10.1016/j.mam.2012.12.005 yhumk8b8 0.594597 Ivarsson_2012, Rytkönen_2007 Bütepage_2015
14 Yan_X_2009 Regulation of TGF-β signaling by Smad7 Yan, Xiaohua; Liu, Ziying; Chen, Yeguang 2009 2009-04-23 PMC N PMC7110000 19352540.0 10.1093/abbs/gmp018 ea1tel3o 0.585920 Lin_L_2019 Zhao_2014
15 Wang_2018 Targeting deubiquitinase USP28 for cancer therapy Wang, Xiaofang; Liu, Zhiyi; Zhang, Li; Yang, Zhaozhi; Chen, Xingxing; Luo, Jurui; Zhou, Zhirui; Mei, Xin; Yu, Xiaoli; Shao, Zhimin; Feng, Yan; Fu, Shen; Zhang, Zhen; Wei, Dongping; Jia, Lijun; Ma, Jinli; Guo, Xiaomao 2018 2018-02-07 COMM-USE N PMC5833459 29415985.0 10.1038/s41419-017-0208-z 9erzows3 0.581607 Jang_2019, Rytkönen_2007 Jacomin_2018
16 Jacq_2013 Deubiquitylating Enzymes and DNA Damage Response Pathways Jacq, Xavier; Kemp, Mark; Martin, Niall M. B.; Jackson, Stephen P. 2013 2013-05-28 PMC N PMC3756857 23712866.0 10.1007/s12013-013-9635-3 1dx2ox4n 0.571606 Rytkönen_2007, Jang_2019
17 Walker_2018 In wound repair vimentin mediates the transition of mesenchymal leader cells to a myofibroblast phenotype Walker, J. L.; Bleaken, B. M.; Romisher, A. R.; Alnwibit, A. A.; Menko, A. S. 2018 2018-07-01 NONCOMM N PMC6080657 29718762.0 10.1091/mbc.e17-06-0364 9g3cof9e 0.537843 Bernardini_2012, Colegio_2011 Bogenrieder_2002
18 Baek_2014 Deubiquitinating Enzymes as Novel Targets for Cancer Therapies Baek, Kwang-Hyun; Lim, Key-Hwan; Park, Jang-Joon 2014 2014-08-26 PMC N PMC7123001 10.1007/978-3-319-06752-0_15 38nm2us6 0.534285 Rytkönen_2007 Jacomin_2018, Wang_2018
19 Fong_2013 Dietary Phytochemicals Target Cancer Stem Cells for Cancer Chemoprevention Fong, Dunne; Chan, Marion M. 2013 2013-12-10 PMC N PMC7122321 10.1007/978-1-4614-9326-6_5 dlxyym0p 0.531229 Singha_2015, Wang_2014 Kashyap_2017
20 Singha_2015 Transcriptional Regulation of Chemokine Expression in Ovarian Cancer Singha, Bipradeb; Gatla, Himavanth R.; Vancurova, Ivana 2015 2015-03-17 COMM-USE N PMC4384120 25790431.0 10.3390/biom5010223 g3a9onb5 0.525432 Colegio_2011, Jang_2019
21 Yang_2019 The Redox Role of G6PD in Cell Growth, Cell Death, and Cancer Yang, Hung-Chi; Wu, Yi-Hsuan; Yen, Wei-Chen; Liu, Hui-Ya; Hwang, Tsong-Long; Stern, Arnold; Chiu, Daniel Tsun-Yee 2019 2019-09-08 COMM-USE N PMC6770671 31500396.0 10.3390/cells8091055 rsl79cxo 0.521525 Jang_2019, Choi_2020 Park_2016
22 Boulon_2010 The Nucleolus under Stress Boulon, Séverine; Westman, Belinda J.; Hutten, Saskia; Boisvert, François-Michel; Lamond, Angus I. 2010 2010-10-22 PMC N PMC2987465 20965417.0 10.1016/j.molcel.2010.09.024 au9pyflh 0.507478 Choi_2020, Jang_2019
23 Mirzaei_2018 Viruses as key modulators of the TGF‐β pathway; a double‐edged sword involved in cancer Mirzaei, Habibollah; Faghihloo, Ebrahim 2018 2018-01-18 PMC N PMC7169117 29345394.0 10.1002/rmv.1967 xv30f1ve 0.497581 Jang_2019, Colegio_2011
24 Dumitrascu_2013 Critical physiological and pathological functions of Forkhead Box O tumor suppressors Dumitrascu, Georgiana R.; Bucur, Octavian 2013 2013-12-31 COMM-USE N PMC6941590 10.15190/d.2013.5 mrh2pbi6 0.496594
25 van_der_Heden_van_Noort_2018 How to Target Viral and Bacterial Effector Proteins Interfering with Ubiquitin Signaling van der Heden van Noort, Gerbrand J.; Ovaa, Huib 2018 2018-09-04 PMC N PMC7120092 30178261.0 10.1007/82_2018_134 bcaerchf 0.496057 Ivarsson_2012
26 Bütepage_2015 Intracellular Mono-ADP-Ribosylation in Signaling and Disease Bütepage, Mareike; Eckei, Laura; Verheugd, Patricia; Lüscher, Bernhard 2015 2015-09-25 COMM-USE N PMC4695847 26426055.0 10.3390/cells4040569 wjpc6zgq 0.475520 Rytkönen_2007
27 Yang_2017 Antagonizing cytokine-mediated JAK-STAT signaling by porcine reproductive and respiratory syndrome virus Yang, Liping; Zhang, Yan-Jin 2017 2017-09-30 PMC N PMC7117332 28069291.0 10.1016/j.vetmic.2016.12.036 pahx29j7 0.465321 Lester_2014
28 Thomas_2018 Upsetting the Balance: When Viruses Manipulate Cell Polarity Control Thomas, Miranda; Banks, Lawrence 2018 2018-09-28 PMC N PMC7094317 29680664.0 10.1016/j.jmb.2018.04.016 cjqbisvm 0.461383
29 Terry_2014 Molecular control of monocyte development Terry, Rachael L.; Miller, Stephen D. 2014 2014-09-01 PMC N PMC4162862 24709055.0 10.1016/j.cellimm.2014.02.008 78hob2q7 0.460336 Bernardini_2012, Geijtenbeek_2009 Yang_2019
30 Verhelst_2013 IκB kinase ɛ (IKKɛ): A therapeutic target in inflammation and cancer Verhelst, Kelly; Verstrepen, Lynn; Carpentier, Isabelle; Beyaert, Rudi 2013 2013-04-01 PMC N PMC7111187 23333767.0 10.1016/j.bcp.2013.01.007 55lftxc7 0.439791 Lester_2014, Jang_2019, Geijtenbeek_2009 Batra_2011
31 Rytkönen_2007 Bacterial Interference of Ubiquitination and Deubiquitination Rytkönen, Anne; Holden, David W. 2007 2007-03-15 PMC N 18005678.0 10.1016/j.chom.2007.02.003 85zqymgt 0.435018 Jang_2019
32 Lopez‐Castejon_2019 Control of the inflammasome by the ubiquitin system Lopez‐Castejon, Gloria 2019 2019-11-20 PMC N PMC7138099 31679183.0 10.1111/febs.15118 hkflbc7c 0.428550 Choi_2020, Jang_2019, Lester_2014 Burrack_2014
33 Diesch_2014 Perturbations at the ribosomal genes loci are at the centre of cellular dysfunction and human disease Diesch, Jeannine; Hannan, Ross D; Sanij, Elaine 2014 2014-08-19 COMM-USE N PMC4422213 25949792.0 10.1186/2045-3701-4-43 hug3mbs1 0.426893
34 Dai_L_2013 Emmprin and KSHV: New partners in viral cancer pathogenesis Dai, Lu; Bai, Lihua; Lu, Ying; Xu, Zengguang; Reiss, Krys; Valle, Luis Del; Kaleeba, Johnan; Toole, Bryan P.; Parsons, Chris; Qin, Zhiqiang 2013 2013-09-01 None N PMC3728473 23743354.0 10.1016/j.canlet.2013.05.037 pej5quj5 0.420848 Singha_2015
35 Palazzo_2017 ADP‐ribosylation: new facets of an ancient modification Palazzo, Luca; Mikoč, Andreja; Ahel, Ivan 2017 2017-04-26 PMC N PMC7163968 28383827.0 10.1111/febs.14078 gmzue6lj 0.417514 Rytkönen_2007, Lester_2014
36 Imre_2020 The involvement of regulated cell death forms in modulating the bacterial and viral pathogenesis Imre, Gergely 2020 2020-01-27 PMC N 10.1016/bs.ircmb.2019.12.008 690kpupt 0.411887 Lester_2014, Jang_2019 Burrack_2014
37 Pawlicka_2020 Nonsense-Mediated mRNA Decay: Pathologies and the Potential for Novel Therapeutics Pawlicka, Kamila; Kalathiya, Umesh; Alfaro, Javier 2020 2020-03-24 COMM-USE N PMC7140085 32213869.0 10.3390/cancers12030765 43e2lkht 0.399519 Jang_2019
38 Singh_2016 Deubiquitinases and cancer: A snapshot Singh, Nishant; Singh, Anuradha Bharara 2016 2016-07-31 PMC N PMC7128910 27211605.0 10.1016/j.critrevonc.2016.04.018 crl8bxo1 0.398790 Rytkönen_2007, Jang_2019 Wang_2018
39 Versteeg_2014 InTRIMsic immunity: Positive and negative regulation of immune signaling by tripartite motif proteins Versteeg, Gijs A.; Benke, Stefan; García-Sastre, Adolfo; Rajsbaum, Ricardo 2014 2014-10-31 PMC N 25172371.0 10.1016/j.cytogfr.2014.08.001 gfrkqhzt 0.392792 Lester_2014
40 Berard_2017 Methods and approaches to disease mechanisms using systems kinomics Berard, Alicia; Kroeker, Andrea; McQueen, Peter; Coombs, Kevin M. 2017 2017-12-18 NONCOMM N PMC5884222 29911197.0 10.1016/j.synbio.2017.12.004 c7beotyb 0.375062 Rytkönen_2007, Levine_2015, Postigo_2009 Bütepage_2015
41 Batra_2011 Nuclear Factor-κB: a Key Regulator in Health and Disease of Lungs Batra, Sanjay; Balamayooran, Gayathriy; Sahoo, Malaya K. 2011 2011-07-26 PMC N PMC7079756 21786215.0 10.1007/s00005-011-0136-z sja8ehz0 0.373848 Jang_2019, Singha_2015
42 Öbrink_1997 CEA adhesion molecules: multifunctional proteins with signal-regulatory properties Öbrink, Björn 1997 1997-10-31 PMC N PMC7135799 9330864.0 10.1016/s0955-0674(97)80114-7 2xueg9lg 0.372821 Ivarsson_2012, Lin_L_2019 Kuespert_2006, Edwards_2008
43 Karlberg_2013 Structural biology of the writers, readers, and erasers in mono- and poly(ADP-ribose) mediated signaling Karlberg, Tobias; Langelier, Marie-France; Pascal, John M.; Schüler, Herwig 2013 2013-12-31 None N PMC3726583 23458732.0 10.1016/j.mam.2013.02.002 9jkhnxa4 0.368864 Rytkönen_2007 Bütepage_2015, Rack_2020
44 Feng_2018 Programmed cell removal by calreticulin in tissue homeostasis and cancer Feng, Mingye; Marjon, Kristopher D.; Zhu, Fangfang; Weissman-Tsukamoto, Rachel; Levett, Aaron; Sullivan, Katie; Kao, Kevin S.; Markovic, Maxim; Bump, Paul A.; Jackson, Hannah M.; Choi, Timothy S.; Chen, Jing; Banuelos, Allison M.; Liu, Jie; Gip, Phung; Cheng, Lei; Wang, Denong; Weissman, Irving L. 2018 2018-08-10 None N PMC6086865 30097573.0 10.1038/s41467-018-05211-7 8i2dt35l 0.363096 Bernardini_2012 Brosseau_2018
45 Siegfried_2020 Proprotein convertases: Key players in inflammation-related malignancies and metastasis Siegfried, Geraldine; Descarpentrie, Jean; Evrard, Serge; Khatib, Abdel-Majid 2020 2020-03-31 None N PMC7115805 31899298.0 10.1016/j.canlet.2019.12.027 g6ynt0f9 0.357820 Singha_2015, Bernardini_2012, Colegio_2011 Brosseau_2018
46 Catara_2019 Targeting ADP-ribosylation as an antimicrobial strategy Catara, Giuliana; Corteggio, Annunziata; Valente, Carmen; Grimaldi, Giovanna; Palazzo, Luca 2019 2019-09-30 PMC N 31176616.0 10.1016/j.bcp.2019.06.001 wqivhe4l 0.355132 Lester_2014, Jang_2019, Orvedahl_2008
47 Mata-Cantero_2014 The Ubiquitin-Proteasome System (UPS) as a Cancer Drug Target: Emerging Mechanisms and Therapeutics Mata-Cantero, Lydia; Lobato-Gil, Sofía; Aillet, Fabienne; Lang, Valérie; Rodriguez, Manuel S. 2014 2014-10-14 PMC N PMC7121086 10.1007/978-94-017-9421-3_11 ar6glrp7 0.348174 Postigo_2009, Jang_2019, Rytkönen_2007
48 Chen_2012 The essential adaptors of innate immune signaling Chen, Huihui; Jiang, Zhengfan 2012 2012-09-21 PMC N PMC4875439 22996173.0 10.1007/s13238-012-2063-0 q923xxn2 0.330902 Lester_2014, Geijtenbeek_2009
49 Rahman_2011 Modulation of NF-κB signalling by microbial pathogens Rahman, Masmudur M.; McFadden, Grant 2011 2011-03-08 None N PMC3611960 21383764.0 10.1038/nrmicro2539 np30p90y 0.330247 Lester_2014, Geijtenbeek_2009 Chen_2012
50 Kashyap_2017 Kaempferol – A dietary anticancer molecule with multiple mechanisms of action: Recent trends and advancements Kashyap, Dharambir; Sharma, Ajay; Tuli, Hardeep Singh; Sak, Katrin; Punia, Sandeep; Mukherjee, Tapan K. 2017 2017-03-31 PMC N PMC7104980 10.1016/j.jff.2017.01.022 1ya21ch7 0.327459 Rytkönen_2007, Jang_2019, Orvedahl_2008
51 Christiansen_2013 The functional role of the novel biomarker karyopherin α 2 (KPNA2) in cancer Christiansen, Anders; Dyrskjøt, Lars 2013 2013-04-30 PMC N PMC7126488 23268335.0 10.1016/j.canlet.2012.12.013 5xyfrru7 0.320656 Singha_2015 Zi_M_2018
52 Zhang_2014 Development of inhibitors in the ubiquitination cascade Zhang, Wei; Sidhu, Sachdev S. 2014 2014-01-21 PMC N PMC7094371 24239534.0 10.1016/j.febslet.2013.11.003 19i3affo 0.313302 Jang_2019, Rytkönen_2007, Postigo_2009 Fugère_2005
53 Fuchs_2012 Ubiquitination-mediated regulation of interferon responses Fuchs, Serge Y. 2012 2012-03-07 PMC N PMC3703147 22394219.0 10.3109/08977194.2012.669382 pw1cw2yw 0.312489 Lester_2014, Geijtenbeek_2009
54 Ramon_y_Cajal_2018 Beyond molecular tumor heterogeneity: protein synthesis takes control Ramon y Cajal, Santiago; Castellvi, Josep; Hümmer, Stefan; Peg, Vicente; Pelletier, Jerry; Sonenberg, Nahum 2018 2018-02-21 NONCOMM N PMC5945578 29463861.0 10.1038/s41388-018-0152-0 kqb475gu 0.301753 Postigo_2009