Topic 05 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 31 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Oleszak_2001 Presence of Oligoclonal T Cells in Cerebrospinal Fluid of a Child with Multiphasic Disseminated Encephalomyelitis following Hepatitis A Virus Infection Oleszak, Emilia L.; Lin, Wan Lu; Legido, Agustin; Melvin, Joseph; Hardison, Huntley; Hoffman, Brad E.; Katsetos, Christos D.; Platsoucas, Chris D. 2001 2001-09-01 None N PMC96183 11527815.0 10.1128/cdli.8.5.984-992.2001 7xou3a7v 0.819667 Hwang_2015, Hansen_2018, Zuo_J_2009, Kim_T_2005 Martin_1989
2 Memon_2012 Quantitative Analysis of T Cell Receptor Diversity in Clinical Samples of Human Peripheral Blood Memon, Sarfraz A.; Sportès, Claude; Flomerfelt, Francis A.; Gress, Ronald E.; Hakim, Frances T. 2012 2012-01-01 PMC N PMC3253939 21986106.0 10.1016/j.jim.2011.09.012 s4yp54v2 0.776882 Kolls_2012, Hansen_2018, Hwang_2015, Selin_2004
3 Traggiai_2012 Immortalization of Human B Cells: Analysis of B Cell Repertoire and Production of Human Monoclonal Antibodies Traggiai, Elisabetta 2012 2012-05-23 PMC N PMC7119954 22723100.0 10.1007/978-1-61779-931-0_10 et46tnkq 0.763879 Hansen_2018, Kolls_2012 Kwakkenbos_2009
4 Correa_2018 Evaluation of Antigen-Conjugated Fluorescent Beads to Identify Antigen-Specific B Cells Correa, Isabel; Ilieva, Kristina M.; Crescioli, Silvia; Lombardi, Sara; Figini, Mariangela; Cheung, Anthony; Spicer, James F.; Tutt, Andrew N. J.; Nestle, Frank O.; Karagiannis, Panagiotis; Lacy, Katie E.; Karagiannis, Sophia N. 2018 2018-03-23 COMM-USE N PMC5876289 29628923.0 10.3389/fimmu.2018.00493 914y3je0 0.750179 Hansen_2018, Hwang_2015, Zhao_2011
5 Fraussen_2010 A novel method for making human monoclonal antibodies Fraussen, J.; Vrolix, K.; Martinez-Martinez, P.; Losen, M.; Meulemans, E.; De Baets, M.H.; Stinissen, P.; Somers, V. 2010 2010-09-30 PMC N PMC7126289 20732843.0 10.1016/j.jaut.2010.05.001 r1vsvdz0 0.726979 Hansen_2018, Hwang_2015, Koch_2012, Zhao_2011
6 Huang_2013 Isolation of human monoclonal antibodies from peripheral blood B cells Huang, Jinghe; Doria-Rose, Nicole A; Longo, Nancy S; Laub, Leo; Lin, Chien-Li; Turk, Ellen; Kang, Byong H; Migueles, Stephen A; Bailer, Robert T; Mascola, John R; Connors, Mark 2013 2013-09-12 PMC N PMC4844175 24030440.0 10.1038/nprot.2013.117 r3l4q7hb 0.726018 Hansen_2018, Kolls_2012, Hwang_2015
7 Pinna_2009 Clonal dissection of the human memory B cell repertoire following infection and vaccination Pinna, Debora; Corti, Davide; Jarrossay, David; Sallusto, Federica; Lanzavecchia, Antonio 2009 2009-04-29 PMC N PMC3864550 19404981.0 10.1002/eji.200839129 r1jew0o0 0.718890 Hwang_2015, Hansen_2018, Kolls_2012, Koch_2012, Zhao_2011 Anson_2016
8 Smith_2013 Induction of Interferon-Stimulated Genes on the IL-4 Response Axis by Epstein-Barr Virus Infected Human B Cells; Relevance to Cellular Transformation Smith, Nikki; Tierney, Rosemary; Wei, Wenbin; Vockerodt, Martina; Murray, Paul G.; Woodman, Ciaran B.; Rowe, Martin 2013 2013-05-27 COMM-USE N PMC3664578 23724103.0 10.1371/journal.pone.0064868 fkqdrwer 0.714764 Hansen_2018, Hwang_2015, Koch_2012, Kolls_2012, Zhao_2012 Kohanawa_1994
9 Lanzavecchia_2006 Understanding and making use of human memory B cells Lanzavecchia, Antonio; Bernasconi, Nadia; Traggiai, Elisabetta; Ruprecht, Claudia R.; Corti, Davide; Sallusto, Federica 2006 2006-06-13 PMC N PMC7165660 16824137.0 10.1111/j.0105-2896.2006.00403.x uwr5jr9u 0.654031 Hwang_2015, Hansen_2018, Kolls_2012, Koch_2012, Huang_2019
10 Zhao_2013 Development of transgenic mice expressing a coronavirus-specific public CD4 T cell receptor Zhao, Jingxian; Fett, Craig; Pewe, Lecia; Zhao, Jincun; Perlman, Stanley 2013 2013-10-31 None N PMC3850057 23928495.0 10.1016/j.jim.2013.07.011 7jh3zunb 0.652455 Hansen_2018, Hwang_2015, Kim_T_2005, Zhao_2011
11 Lyski_2019 Approaches to Interrogating the Human Memory B-Cell and Memory-Derived Antibody Repertoire Following Dengue Virus Infection Lyski, Zoe L.; Messer, William B. 2019 2019-06-06 COMM-USE N PMC6562360 31244836.0 10.3389/fimmu.2019.01276 8hgp81ws 0.633735 Kolls_2012, Selin_2004 Graham_2003
12 Kwakkenbos_2009 Generation of stable monoclonal antibody-producing BCR(+) human memory B cells by genetic programming Kwakkenbos, Mark J.; Diehl, Sean A.; Yasuda, Etsuko; Bakker, Arjen Q.; van Geelen, Caroline M.M.; Lukens, Michaël V.; van Bleek, Grada M.; Widjojoatmodjo, Myra N.; Bogers, Willy M.J.M.; Mei, Henrik; Radbruch, Andreas; Scheeren, Ferenc A.; Spits, Hergen; Beaumont, Tim 2009 2009-12-20 None N PMC2861345 20023635.0 10.1038/nm.2071 d3ui50d6 0.582650 Hansen_2018, Hwang_2015, Zhao_2011, Koch_2012, Zuo_J_2009 Anson_2016
13 Martin_1989 Virus-specific and autoreactive T cell lines isolated from cerebrospinal fluid of a patient with chronic rubella panencephalitis Martin, Roland; Marquardt, Peter; O'Shea, Siobhan; Borkenstein, Martin; Kreth, Hans W. 1989 1989-06-30 PMC N 2470776.0 10.1016/0165-5728(89)90065-9 v0kzuqdy 0.569448 Hwang_2015, Hansen_2018, Zhao_2011, Zuo_J_2009
14 Lanzavecchia_2009 Human B cell memory Lanzavecchia, Antonio; Sallusto, Federica 2009 2009-06-30 PMC N PMC7134627 19497721.0 10.1016/j.coi.2009.05.019 48sroc4r 0.555209 Kolls_2012, Hwang_2015, Selin_2004 Anson_2016
15 Fraussen_2009 B cell characterization and reactivity analysis in multiple sclerosis Fraussen, J.; Vrolix, K.; Martinez-Martinez, P.; Losen, M.; De Baets, M.H.; Stinissen, P.; Somers, V. 2009 2009-07-31 PMC N 19239929.0 10.1016/j.autrev.2009.02.030 avrxer2w 0.547348 Hwang_2015, Hansen_2018, Kolls_2012, Zhao_2011, Koch_2012
16 Poh_C_2020 Multiplex Screening Assay for Identifying Cytotoxic CD8(+) T Cell Epitopes Poh, Chek Meng; Zheng, Jian; Channappanavar, Rudragouda; Chang, Zi Wei; Nguyen, Thi H. O.; Rénia, Laurent; Kedzierska, Katherine; Perlman, Stanley; Poon, Leo L. M. 2020 2020-03-11 COMM-USE N PMC7078160 32218786.0 10.3389/fimmu.2020.00400 6l74rrlm 0.541303 Kolls_2012, Hansen_2018, Hwang_2015, Koch_2012, Del_Pozzo_2010 Graham_2003, Busch_2020, Charley_1987
17 Wang_1992 Evidence for the existence of IL-4 and IFNγ secreting cells in the T cell repertoire of naive mice Wang, Hui; Mohapatra, Shyam S.; HayGlass, Kent T. 1992 1992-02-01 PMC N 1531475.0 10.1016/0165-2478(92)90142-b gtah4kp7 0.527204 Hansen_2018, Zhao_2012, Hwang_2015, Koch_2012, Zhao_2011
18 Younesi_2013 Assessment of the effect of TLR7/8, TLR9 agonists and CD40 ligand on the transformation efficiency of Epstein-Barr virus in human B lymphocytes by limiting dilution assay Younesi, Vahid; Shirazi, Forough Golsaz; Memarian, Ali; Amanzadeh, Amir; Jeddi-Tehrani, Mahmood; Shokri, Fazel 2013 2013-02-13 PMC N PMC3886530 23404520.0 10.1007/s10616-013-9542-x ugfv739e 0.525043 Hansen_2018, Swiecki_2010, Zhao_2012
19 Groves_1988 A Bovine Monoclonal Antibody to Oestrone/Oestradiol Prepared by a (Murine×Bovine) ×Bovine Interspecies Fusion Groves, D.J.; Clayton, J.; Morris, B.A. 1988 1988-02-29 PMC N 3376424.0 10.1016/0165-2427(88)90039-6 y3uc6wur 0.523416
20 Shah_2019 Insights From Analysis of Human Antigen-Specific Memory B Cell Repertoires Shah, Hemangi B.; Smith, Kenneth; Wren, Jonathan D.; Webb, Carol F.; Ballard, Jimmy D.; Bourn, Rebecka L.; James, Judith A.; Lang, Mark L. 2019 2019-01-15 COMM-USE N PMC6340933 30697210.0 10.3389/fimmu.2018.03064 25yjyyug 0.523123 Kolls_2012, Selin_2004, Selin_2004 Boonyaratanakornkit_2019
21 Brabb_2000 In Situ Tolerance within the Central Nervous System as a Mechanism for Preventing Autoimmunity Brabb, Thea; von Dassow, Peter; Ordonez, Nadia; Schnabel, Bryan; Duke, Blythe; Goverman, Joan 2000 2000-09-18 NONCOMM N PMC2193284 10993917.0 kcygxo7h 0.515794 Hwang_2015, Hansen_2018, Zhao_2011, Koch_2012
22 Poe_J_2014 EndoU is a novel regulator of AICD during peripheral B cell selection Poe, Jonathan C.; Kountikov, Evgueni I.; Lykken, Jacquelyn M.; Natarajan, Abirami; Marchuk, Douglas A.; Tedder, Thomas F. 2014 2014-01-13 NONCOMM N PMC3892980 24344237.0 10.1084/jem.20130648 5804sjmo 0.512717 Hansen_2018, Koch_2012, Hwang_2015, Zuo_J_2009, Zhao_2011
23 Zarnitsyna_2013 Estimating the Diversity, Completeness, and Cross-Reactivity of the T Cell Repertoire Zarnitsyna, Veronika I.; Evavold, Brian D.; Schoettle, Louis N.; Blattman, Joseph N.; Antia, Rustom 2013 2013-12-26 COMM-USE N PMC3872652 24421780.0 10.3389/fimmu.2013.00485 tbw4queq 0.487574 Kolls_2012, Selin_2004 Kim_S_2005, Frankild_2008
24 Welsh_2006 The Privacy of T Cell Memory to Viruses Welsh, R. M.; Kim, S. K.; Cornberg, M.; Clute, S. C.; Selin, L. K.; Naumov, Y. N. 2006 2006-01-01 PMC N PMC7122576 17048707.0 10.1007/3-540-32636-7_5 7k208jkx 0.487379 Kolls_2012, Hwang_2015, Hansen_2018, Selin_2004, Selin_2004 Kim_S_2005, Jagadeesh_2019, Lum_L_2018
25 Gerdemann_2012 Rapidly Generated Multivirus-specific Cytotoxic T Lymphocytes for the Prophylaxis and Treatment of Viral Infections Gerdemann, Ulrike; Keirnan, Jacqueline M; Katari, Usha L; Yanagisawa, Ryu; Christin, Anne S; Huye, Leslie E; Perna, Serena K; Ennamuri, Sravya; Gottschalk, Stephen; Brenner, Malcolm K; Heslop, Helen E; Rooney, Cliona M; Leen, Ann M 2012 2012-08-31 None N PMC3412490 22801446.0 10.1038/mt.2012.130 ep5c5o32 0.485602 Hwang_2015, Swiecki_2010, Hansen_2018 Lum_L_2018, Schmidt_2018
26 Selin_2004 CD8 memory T cells: cross-reactivity and heterologous immunity Selin, Liisa K.; Cornberg, Markus; Brehm, Michael A.; Kim, Sung-Kwon; Calcagno, Claudia; Ghersi, Dario; Puzone, Roberto; Celada, Franco; Welsh, Raymond M. 2004 2004-10-31 PMC N PMC7128110 15528078.0 10.1016/j.smim.2004.08.014 kek0vtdi 0.459333 Selin_2004, Kolls_2012, Hwang_2015, Hansen_2018 Kim_S_2005, Selin_2004, Anson_2016
27 Banu_2014 Building and Optimizing a Virus-specific T Cell Receptor Library for Targeted Immunotherapy in Viral Infections Banu, Nasirah; Chia, Adeline; Ho, Zi Zong; Garcia, Alfonso Tan; Paravasivam, Komathi; Grotenbreg, Gijsbert M.; Bertoletti, Antonio; Gehring, Adam J. 2014 2014-02-25 NONCOMM N PMC3933865 24566718.0 10.1038/srep04166 44w6omdp 0.422359 Hansen_2018, Hwang_2015, Zhao_2012, Zhao_2011, Koch_2012 Kim_S_2012, Lum_L_2018, Busch_2020
28 Anson_2016 Regulation and Maintenance of an Adoptive T-Cell Dependent Memory B Cell Pool Anson, Marie; Amado, Inês; Mailhé, Marie-Pierre; Donnadieu, Emmanuel; Garcia, Sylvie; Huetz, François; Freitas, Antonio A. 2016 2016-11-23 COMM-USE N PMC5120830 27880797.0 10.1371/journal.pone.0167003 qq73gr9y 0.417438 Hwang_2015, Hansen_2018, Koch_2012, Zhao_2011, Zhao_2012 Del_Pozzo_2010
29 Steyaert_2007 The intraspleen huPBL NOD/SCID model to study the human HIV-specific antibody response selected in the course of natural infection Steyaert, Sophia; Verhoye, Lieven; Beirnaert, Els; Donners, Helen; Fransen, Katrien; Heyndrickx, Leo; Vanham, Guido; Leroux-Roels, Geert; Vanlandschoot, Peter 2007 2007-03-30 PMC N PMC7125539 17258763.0 10.1016/j.jim.2006.12.003 6nuqcoil 0.410616 Hwang_2015, Hansen_2018, Zuo_J_2009 Charley_1987
30 Harari_2004 Phenotypic heterogeneity of antigen‐specific CD4 T cells under different conditions of antigen persistence and antigen load Harari, Alexandre; Vallelian, Florence; Pantaleo, Giuseppe 2004 2004-10-14 PMC N PMC7163537 15484193.0 10.1002/eji.200425324 ovbuy2fr 0.400983 Hwang_2015, Hansen_2018, Zhao_2011, Zuo_J_2009, Zhao_2012
31 Kuerten_2012 Resting of Cryopreserved PBMC Does Not Generally Benefit the Performance of Antigen-Specific T Cell ELISPOT Assays Kuerten, Stefanie; Batoulis, Helena; Recks, Mascha S.; Karacsony, Edith; Zhang, Wenji; Subbramanian, Ramu A.; Lehmann, Paul V. 2012 2012-07-30 COMM-USE N PMC3901103 24710483.0 10.3390/cells1030409 kbwmbxog 0.394326 Hwang_2015, Hansen_2018, Zhao_2012, Koch_2012 Charley_1987
32 Selin_2004 Plasticity of T Cell Memory Responses to Viruses Selin, Liisa K; Welsh, Raymond M 2004 2004-01-31 PMC N PMC7130098 14738760.0 10.1016/s1074-7613(03)00356-x ugk8wov9 0.378884 Selin_2004, Hwang_2015, Kolls_2012, Hansen_2018 Selin_2004, Jagadeesh_2019, Kim_S_2005
33 Frankild_2008 Amino Acid Similarity Accounts for T Cell Cross-Reactivity and for “Holes” in the T Cell Repertoire Frankild, Sune; de Boer, Rob J.; Lund, Ole; Nielsen, Morten; Kesmir, Can 2008 2008-03-19 COMM-USE N PMC2263130 18350167.0 10.1371/journal.pone.0001831 x80cs5bc 0.373715 Kolls_2012, Hausmann_1997, Hansen_2018 Butler_2008, Kim_S_2005, Wang_2012
34 Sewell_2012 Why must T cells be cross-reactive? Sewell, Andrew K. 2012 2012-08-24 PMC N PMC7097784 22918468.0 10.1038/nri3279 joyan7ij 0.366831 Hausmann_1997, Hansen_2018, Kolls_2012 Wang_2012, Kim_S_2012, Kim_S_2005
35 Goverman_2006 Tolerance and autoimmunity in TCR transgenic mice specific for myelin basic protein Goverman, Joan 2006 2006-04-28 PMC N PMC7165877 10450515.0 10.1111/j.1600-065x.1999.tb01313.x 2zrn6jqg 0.360778 Kolls_2012, Kim_T_2005, Hwang_2015, Koch_2012, Hansen_2018
36 Zhao_2012 The development of Chinese specific human cytomegalovirus polyepitope recombinant vaccine Zhao, Ping; Ma, Dao-Xin; Yu, Shuang; Xue, Fu-Zhong; Zhu, Wei-Wei; Shao, Na; Zhang, Jing-Ru; Ji, Chun-Yan 2012 2012-02-29 PMC N PMC7114286 22197248.0 10.1016/j.antiviral.2011.12.005 xw3n0fhi 0.360220 Hwang_2015
37 Kim_Y_2013 Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation Kim, Yohan; Yewdell, Jonathan W.; Sette, Alessandro; Peters, Bjoern 2013 2013-01-24 COMM-USE N PMC3554532 23357871.0 10.1371/journal.pcbi.1002884 ej0e1c4d 0.354474 Kim_S_2012, Wang_2012, Kim_S_2005
38 Boonyaratanakornkit_2019 Techniques to Study Antigen-Specific B Cell Responses Boonyaratanakornkit, Jim; Taylor, Justin J. 2019 2019-07-24 COMM-USE N PMC6667631 31396218.0 10.3389/fimmu.2019.01694 3gt3vlev 0.352200 Kolls_2012, Hwang_2015, Hansen_2018, Koch_2012, Zhao_2011 Lum_L_2018, Graham_2003
39 Lum_L_2018 Specific Adoptive T-Cell Therapy for Viral and Fungal Infections Lum, Lawrence G.; Bollard, Catherine M. 2018 2018-06-19 PMC N PMC7121368 10.1007/978-3-319-77674-3_20 bej10xbf 0.350422 Hwang_2015, Hansen_2018, Swiecki_2010, Kolls_2012, Waggoner_2011 Gerdemann_2012, Schmidt_2018
40 Maeurer_2005 TCR Analyses: T-cell receptor CDR3 analysis: Molecular fingerprinting of the T-cell receptor repertoire Maeurer, Markus J. 2005 2005-01-01 PMC N PMC7120667 10.1007/1-4020-3623-x_14 d7v4mg12 0.349244 Hansen_2018, Kolls_2012, Hausmann_1997, Hwang_2015, Koch_2012 Wang_2012, Kim_S_2012, Sigal_2016, Moseman_2013
41 DiSano_2017 An optimized method for enumerating CNS derived memory B cells during viral-induced inflammation DiSano, Krista D.; Stohlman, Stephen A.; Bergmann, Cornelia C. 2017 2017-06-15 PMC N PMC5545894 28495370.0 10.1016/j.jneumeth.2017.05.011 08mk8a86 0.346136 Hwang_2015, Hansen_2018, Zhao_2012, Zhao_2011, Koch_2012
42 Kim_S_2005 Private specificities of CD8 T cell responses control patterns of heterologous immunity Kim, Sung-Kwon; Cornberg, Markus; Wang, Xiaoting Z.; Chen, Hong D.; Selin, Liisa K.; Welsh, Raymond M. 2005 2005-02-21 NONCOMM N PMC2213046 15710651.0 10.1084/jem.20041337 55gi6gyx 0.343676 Hwang_2015, Kim_T_2005, Hansen_2018, Zhao_2011
43 Davies_1997 Molecular mimicry: Can epitope mimicry induce autoimmune disease? Davies, Janet M 1997 1997-04-01 PMC N PMC7165643 9107563.0 10.1038/icb.1997.16 or5nzvw3 0.327987 Kolls_2012, Koch_2012
44 Khoruts_2005 A causal link between lymphopenia and autoimmunity Khoruts, Alexander; Fraser, Joanne M. 2005 2005-04-15 PMC N PMC7126288 15790505.0 10.1016/j.imlet.2004.10.022 33f85x7z 0.321771 Kolls_2012, Hwang_2015, Koch_2012, Hansen_2018, Zhao_2012 Olson_2013
45 Welsh_2004 Apoptosis and loss of virus-specific CD8+ T-cell memory Welsh, Raymond M; Bahl, Kapil; Wang, Xiaoting Z 2004 2004-06-30 PMC N PMC7125879 15134774.0 10.1016/j.coi.2004.03.020 223cqz02 0.316190 Hwang_2015, Hansen_2018, Zhao_2011, Kolls_2012 Schmidt_2018, Schmidt_2018
46 Huang_2020 Blood single cell immune profiling reveals the interferon-MAPK pathway mediated adaptive immune response for COVID-19 Lulin Huang; Yi Shi; Bo Gong; Li Jiang; Xiaoqi Liu; Jialiang Yang; Juan Tang; Chunfang You; Qi Jiang; Bo Long; Tao Zeng; Mei Luo; Fanwei Zeng; Fanxin Zeng; Shuqiang Wang; Xingxiang Yang; Zhenglin Yang 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.15.20033472 2okcuviq 0.311682 Kolls_2012, Koch_2012, Hansen_2018