Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 28 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Lachant_2018 The clinical impact of pneumocystis and viral PCR testing on bronchoalveolar lavage in immunosuppressed patients Lachant, Daniel J.; Croft, Daniel P.; McGrane Minton, Heather; Hardy, Dwight J.; Prasad, Paritosh; Kottmann, R. Matthew 2018 2018-12-31 PMC N PMC7126456 30509714.0 10.1016/j.rmed.2018.10.021 xcd26vdv 0.903958
2 Powell_2008 Validity of the Common Cold Questionnaire (CCQ) in Asthma Exacerbations Powell, Heather; Smart, Joanne; Wood, Lisa G.; Grissell, Terry; Shafren, Darren R.; Hensley, Michael J.; Gibson, Peter G. 2008 2008-03-19 COMM-USE N PMC2266793 18350141.0 10.1371/journal.pone.0001802 uxknan3t 0.831232
3 Weiss_2019 Opportunities Revealed for Antimicrobial Stewardship and Clinical Practice with Implementation of a Rapid Respiratory Multiplex Assay Weiss, Zoe F.; Cunha, Cheston B.; Chambers, Alison B.; Carr, Audrey V.; Rochat, Cleo; Raglow-Defranco, Mariska; Parente, Diane M.; Angus, Aimee; Mermel, Leonard A.; Sivaprasad, Latha; Chapin, Kimberle 2019 2019-09-24 COMM-USE N PMC6760939 31413077.0 10.1128/jcm.00861-19 sq93cz2b 0.811278
4 Andrews_2017 Multiplex PCR point of care testing versus routine, laboratory-based testing in the treatment of adults with respiratory tract infections: a quasi-randomised study assessing impact on length of stay and antimicrobial use Andrews, Denise; Chetty, Yumela; Cooper, Ben S.; Virk, Manjinder; Glass, Stephen K; Letters, Andrew; Kelly, Philip A.; Sudhanva, Malur; Jeyaratnam, Dakshika 2017 2017-10-10 COMM-USE N PMC5635493 29017451.0 10.1186/s12879-017-2784-z 1sdt9zz8 0.710654
5 Echavarría_2018 Clinical impact of rapid molecular detection of respiratory pathogens in patients with acute respiratory infection Echavarría, M.; Marcone, D.N.; Querci, M.; Seoane, A.; Ypas, M.; Videla, C.; O'Farrell, C.; Vidaurreta, S.; Ekstrom, J.; Carballal, G. 2018 2018-11-30 PMC N 30267999.0 10.1016/j.jcv.2018.09.009 cwunxhyw 0.651192
6 Qian_2019 Rapid detection of respiratory organisms with FilmArray respiratory panel and its impact on clinical decisions in Shanghai, China, 2016‐2018 Qian, Yiyi; Ai, Jingwen; Wu, Jing; Yu, Shenglei; Cui, Peng; Gao, Yan; Jin, Jialin; Weng, Xinhua; Zhang, Wenhong 2019 2019-12-01 COMM-USE N PMC7040966 31786832.0 10.1111/irv.12701 u1e4e8d8 0.621713 Weiss_2019
7 Shirley_2019 FebriDx(®): A Rapid Diagnostic Test for Differentiating Bacterial and Viral Aetiologies in Acute Respiratory Infections Shirley, Matt 2019 2019-11-06 PMC N PMC7099706 31691924.0 10.1007/s40291-019-00433-x yup3rb7r 0.594945 Self_2017
8 Kadmon_2013 Polymerase‐chain‐reaction‐based diagnosis of viral pulmonary infections in immunocompromised children Kadmon, Gili; Levy, Itzhak; Mandelboim, Michal; Nahum, Elhanan; Stein, Jerry; Dovrat, Sara; Schonfeld, Tommy 2013 2013-03-28 PMC N PMC7159754 23421914.0 10.1111/apa.12207 kch5yfui 0.590631
9 Prendki_2019 Accuracy of comprehensive PCR analysis of nasopharyngeal and oropharyngeal swabs for CT-scan-confirmed pneumonia in elderly patients: a prospective cohort study Prendki, V.; Huttner, B.; Marti, C.; Mamin, A.; Fubini, P.E.; Meynet, M.P.; Scheffler, M.; Montet, X.; Janssens, J.P.; Reny, J.L.; Kaiser, L.; Garin, N.; Stirnemann, J. 2019 2019-09-30 PMC N 30641227.0 10.1016/j.cmi.2018.12.037 0otd1heg 0.578010
10 Boixeda_2012 Microbiological study of patients hospitalized for acute exacerbation of chronic obstructive pulmonary disease (AE-COPD) and the usefulness of analytical and clinical parameters in its identification (VIRAE study) Boixeda, Ramon; Rabella, Nuria; Sauca, Goretti; Delgado, Maria; Martínez-Costa, Xavier; Mauri, Montserrat; Vicente, Vanessa; Palomera, Elisabet; Serra-Prat, Mateu; Capdevila, Josep Antón 2012 2012-05-25 PMC N PMC3379868 22745532.0 10.2147/copd.s30568 yywxmioq 0.556176
11 Self_2017 Diagnostic Accuracy of FebriDx: A Rapid Test to Detect Immune Responses to Viral and Bacterial Upper Respiratory Infections Self, Wesley H.; Rosen, Jeffrey; Sharp, Stephan C.; Filbin, Michael R.; Hou, Peter C.; Parekh, Amisha D.; Kurz, Michael C.; Shapiro, Nathan I. 2017 2017-10-07 COMM-USE N PMC5664009 28991170.0 10.3390/jcm6100094 ey040q2l 0.553101 Shirley_2019
12 Jeremiah_2013 Low utilisation of diagnostic microbiology for community acquired pneumonia in regional Victoria Jeremiah, Cameron J.; Hannan, Liam M.; Baird, Rob; Phelps, Grant; Knight, Brett 2013 2013-02-28 PMC N 10.1097/pat.0b013e32835c76be jxj6kvc2 0.549861
13 Templeton_2005 Improved Diagnosis of the Etiology of Community-Acquired Pneumonia with Real-Time Polymerase Chain Reaction Templeton, Kate E.; Scheltinga, Sitha A.; van den Eeden, Willian C. J. F. M.; Graffelman, Willy A.; van den Broek, Peterhans J.; Claas, Eric C. J. 2005 2005-08-01 PMC N PMC7107904 16007532.0 10.1086/431588 8zpar4xs 0.522090
14 Kilic_2020 Evaluation of the performance of DiaSorin molecular Pneumocystis jirovecii-CMV multiplex real-time PCR assay from bronchoalveolar lavage samples Kilic, A.; Elliott, S.; Hester, L.; Palavecino, E. 2020 2020-01-31 PMC N 10.1016/j.mycmed.2020.100936 5uxtua9o 0.512652
15 O’Connell_2020 The impact of point-of-care testing for influenza A and B on patient flow and management in a medical assessment unit of a general hospital O’Connell, S.; Conlan, C.; Reidy, M.; Stack, C.; Mulgrew, A.; Baruah, J. 2020 2020-03-10 COMM-USE N PMC7063764 32156298.0 10.1186/s13104-020-04986-7 h4qlv9ca 0.486995 Abdul-Khaliq_2011 Brendish_2019
16 Sethi_2011 Molecular Diagnosis of Respiratory Tract Infection in Acute Exacerbations of Chronic Obstructive Pulmonary Disease Sethi, Sanjay 2011 2011-05-01 PMC N PMC7107946 21460287.0 10.1093/cid/cir044 lunbwrqw 0.424095
17 Patrucco_2019 Use of an innovative and non-invasive device for virologic sampling of cough aerosols in patients with community and hospital acquired pneumonia: a pilot study Patrucco, Filippo; Gavelli, Francesco; Ravanini, Paolo; Daverio, Matteo; Statti, Giulia; Castello, Luigi Mario; Andreoni, Stefano; Balbo, Piero Emilio 2019 2019-03-01 PMC N PMC7106764 30523983.0 10.1088/1752-7163/aaf010 l3zxejhd 0.398355
18 Wood_2018 Performance of TEM-PCR vs Culture for Bacterial Identification in Pediatric Musculoskeletal Infections Wood, James B; Sesler, Cheryl; Stalons, Donald; Grigorenko, Elena; Schoenecker, Jonathan G; Creech, C Buddy; Thomsen, Isaac P 2018 2018-05-22 NONCOMM N PMC6007387 29977969.0 10.1093/ofid/ofy119 ky1b1yhv 0.383010
19 AlGhounaim_2017 Diagnostic yield and clinical impact of routine cell culture for respiratory viruses among children with a negative multiplex RT-PCR result AlGhounaim, M.; Xiao, Y.; Caya, C.; Papenburg, J. 2017 2017-09-30 PMC N PMC7106410 28802185.0 10.1016/j.jcv.2017.07.015 m6x9gxwe 0.376719
20 Nolte_2008 Molecular Diagnostics for Detection of Bacterial and Viral Pathogens in Community-Acquired Pneumonia Nolte, Frederick S. 2008 2008-12-01 PMC N PMC7107880 18986277.0 10.1086/591392 u2ujqb7z 0.352182 Zhang_2011
21 Brendish_2019 Impact of point-of-care testing for respiratory viruses on antibiotic use in adults with exacerbation of airways disease Brendish, Nathan J.; Mills, Samuel; Ewings, Sean; Clark, Tristan W. 2019 2019-10-31 PMC N PMC7112619 31233809.0 10.1016/j.jinf.2019.06.010 ycxc551e 0.350579
22 Huttner_2014 Polymerase-chain reaction/electrospray ionization-mass spectrometry for the detection of bacteria and fungi in bronchoalveolar lavage fluids: a prospective observational study Huttner, A.; Emonet, S.; Harbarth, S.; Renzi, G.; Kaiser, L.; Schrenzel, J. 2014 2014-12-31 PMC N PMC7162234 25529027.0 10.1111/1469-0691.12749 lx8bepuj 0.348033
23 Azhar_2020 Influenza species and subtypes circulation among hospitalized patients in Laleh hospital during two influenza seasonal (2016-2017 and 2017-2018) using a multiplex Real Time-Polymerase Chain Reaction Azhar, Iman Rezaee; Mohraz, Minoo; Mardani, Masoud; Tavakoli, Mohammad Ali; Afshar, Amin Ehteshami; Zamani, Mohammad; Sadeghpoor, Simin; Safari, Saeid; Dadashpoor, Roozbeh; Rezaee, Mahsa; Shirvani, Fariba; Azimi, Shohreh; Heydarifard, Zahra; Ranjbar, Hamidreza Hagh; Lotfi, Amir Hossain; Mosadegh, Farhad; Hashemnejad, Farhad; Jazayeri, Seyed Mohammad 2020 2020-04-15 NONCOMM N PMC7171471 10.4081/idr.2020.8139 1ykji0c8 0.345395
24 Pedersen_2018 Using a novel rapid viral test to improve triage of emergency department patients with acute respiratory illness during flu season Pedersen, Courtney J.; Rogan, Daniel T.; Yang, Samuel; Quinn, James V. 2018 2018-11-30 PMC N PMC7106347 30261422.0 10.1016/j.jcv.2018.09.008 t0fqyezl 0.324099
25 McGeer_2009 Diagnostic Testing or Empirical Therapy for Patients Hospitalized with Suspected Influenza: What to Do? McGeer, Allison J. 2009 2009-01-01 PMC N PMC7107924 19067610.0 10.1086/591852 hapzf0fl 0.323415
26 Luchsinger_2016 Comparison of Luminex xTAG® RVP fast assay and real time RT‐PCR for the detection of respiratory viruses in adults with community‐acquired pneumonia Luchsinger, Vivian; Prades, Yara; Ruiz, Mauricio; Pizarro, Rolando; Rossi, Patricio; Lizama, Luis; Garmendia, María Luisa; Meza, Angela; Larrañaga, Carmen; Avendaño, Luis F. 2016 2016-02-02 PMC N PMC7166572 27061405.0 10.1002/jmv.24463 law20pmw 0.315879 Youngs_2019
27 Madigan_2018 Health service impact of testing for respiratory pathogens using cartridge-based multiplex array versus molecular batch testing Madigan, Victoria M.; Sinickas, Vincent G.; Giltrap, Dawn; Kyriakou, Peter; Ryan, Katherine; Chan, Hiu-Tat; Clifford, Vanessa 2018 2018-12-31 PMC N PMC7111697 30389216.0 10.1016/j.pathol.2018.08.012 r3nd2b5v 0.312653 Weiss_2019, LaSala_2007
28 Robert_2018 Diagnostic performance of multiplex PCR on pulmonary samples versus nasopharyngeal aspirates in community-acquired severe lower respiratory tract infections Robert, Sylvie; Lhommet, Claire; Le Brun, Cécile; Garot, Denis; Legras, Annick; Mankikian, Julie; Goudeau, Alain 2018 2018-11-30 PMC N 30195090.0 10.1016/j.jcv.2018.08.001 zoyk5fh1 0.308034