Topic 09 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 23 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Soykut_2008 Selection of staphylococcal enterotoxin B (SEB)-binding peptide using phage display technology Soykut, Esra Acar; Dudak, Fahriye Ceyda; Boyacı, İsmail Hakkı 2008 2008-05-23 PMC N PMC7117543 18359289.0 10.1016/j.bbrc.2008.03.065 n4ooziv4 0.814104 Nagesha_2001, Cruz_2006 Wang_2011
2 Cheng_2011 Construction and Characterization of Single-Chain Variable Fragment Antibody Library Derived from Germline Rearranged Immunoglobulin Variable Genes Cheng, Man; Chan, Shirley Y. W.; Zhao, Qi; Chan, Elaine Y. M.; Au, Shannon W. N.; Lee, Susanna S. T.; Cheung, Wing-Tai 2011 2011-11-11 COMM-USE N PMC3214059 22096568.0 10.1371/journal.pone.0027406 gqzelcxn 0.659382 Nagesha_2001, Thullier_1999, Okda_2017, Tiller_2008 Sun_D_2012, Batonick_2016
3 Liu_Z_2005 Identification of single-chain antibody fragments specific against SARS-associated coronavirus from phage-displayed antibody library Liu, Zheng-Xue; Yi, Guo-Hua; Qi, Yi-Peng; Liu, Ying-Le; Yan, Jun-Peng; Qian, Juan; Du, En-Qi; Ling, Wei-Fang 2005 2005-04-08 PMC N PMC7092915 15737606.0 10.1016/j.bbrc.2005.02.003 mehwd0dk 0.626536 Nagesha_2001, Okda_2017, Shenyang_2007, Thullier_1999 Elshabrawy_2012, Lee_Y_2007, Zhao_2007
4 Guo_D_2013 Screening and Antiviral Analysis of Phages That Display Peptides with an Affinity to Subunit C of Porcine Aminopeptidase Guo, Donghua; Zhu, Qinghe; Feng, Li; Sun, Dongbo 2013 2013-10-01 PMC N PMC3798234 24111863.0 10.1089/mab.2013.0038 ruyeuo00 0.622072 Nagesha_2001, Okda_2017, Cruz_2006
5 Sun_D_2012 Generation of a mouse scFv library specific for porcine aminopeptidase N using the T7 phage display system Sun, Dongbo; Shi, Hongyan; Chen, Jianfei; Shi, Da; Zhu, Qinghe; Zhang, Hong; Liu, Shengwang; Wang, Yunfeng; Qiu, Huaji; Feng, Li 2012 2012-06-30 PMC N PMC7119651 22481024.0 10.1016/j.jviromet.2012.03.021 drq8g229 0.614728 Nagesha_2001 Zhang_2019, Zhang_2010
6 Wang_2011 Phages Bearing Affinity Peptides to Bovine Rotavirus Differentiate the Virus from Other Viruses Wang, Xin; Li, Guangxing; Ren, Yudong; Ren, Xiaofeng 2011 2011-12-06 COMM-USE N PMC3232237 22163050.0 10.1371/journal.pone.0028667 j0v0psyq 0.598022 Wu_D_2011 Wu_D_2011, Zou_H_2013, Wang_2013
7 Goldman_2006 Facile Generation of Heat Stable Antiviral and Antitoxin Single Domain Antibodies from a Semi-synthetic Llama Library Goldman, Ellen R.; Anderson, George P.; Liu, Jinny L.; Delehanty, James B.; Sherwood, Laura J.; Osborn, Lisa E.; Cummins, Larry B.; Hayhurst, Andrew 2006 2006-12-01 PMC N PMC2528076 17165813.0 10.1021/ac0610053 wvxabd3t 0.590209 Hu_W_2013, Irving_2010, Okda_2017, Unkauf_2016 Elshabrawy_2012, Corbett_2011, Chen_2011
8 Chen_2006 Efficient Neutralization of Anthrax Toxin by Chimpanzee Monoclonal Antibodies against Protective Antigen Chen, Zhaochun; Moayeri, Mahtab; Zhou, Yi-Hua; Leppla, Stephen; Emerson, Suzanne; Sebrell, Andrew; Yu, Fujuan; Svitel, Juraj; Schuck, Peter; St. Claire, Marisa; Purcell, Robert 2006 2006-03-01 PMC N PMC7110013 16453257.0 10.1086/500148 w6psvdq7 0.576768 Okda_2017, Thullier_1999, Nagesha_2001, Cruz_2006 Chen_2011, Oleszak_1990
9 Berger_2006 Isolation of High-Affinity Single-Chain Antibodies against Mycobacterium avium subsp. paratuberculosis Surface Proteins from Sheep with Johne's Disease Berger, Sven; Hinz, Dominik; Bannantine, John P.; Griffin, J. Frank T. 2006 2006-09-01 None N PMC1563570 16960114.0 10.1128/cvi.00163-06 8swzryi1 0.526359 Shin_1993 Shin_1993
10 Leu_S_2010 Generation and characterization of anti-α-enolase single-chain antibodies in chicken Leu, Sy-Jye; Lee, Yu-Ching; Shih, Neng-Yao; Huang, I-Jen; Liu, Ko-Jiunn; Lu, Hsu-Feng; Huang, Shih-Yi; Yang, Yi-Yuan 2010 2010-10-15 PMC N PMC7112641 20655599.0 10.1016/j.vetimm.2010.06.001 2601n7a9 0.507846 Nagesha_2001, Thullier_1999, Okda_2017, Andoh_2015, Tiller_2008 Rimstad_1995, Xue_G_2013, Di_Lullo_2019, Andoh_2015
11 Godakova_2019 Camelid VHHs Fused to Human Fc Fragments Provide Long Term Protection Against Botulinum Neurotoxin A in Mice Godakova, Svetlana A.; Noskov, Anatoly N.; Vinogradova, Irina D.; Ugriumova, Galina A.; Solovyev, Andrey I.; Esmagambetov, Ilias B.; Tukhvatulin, Amir I.; Logunov, Denis Y.; Naroditsky, Boris S.; Shcheblyakov, Dmitry V.; Gintsburg, Aleksandr L. 2019 2019-08-07 COMM-USE N PMC6723419 31394847.0 10.3390/toxins11080464 cynpob7b 0.507267 Hu_W_2013, Okda_2017, Wrammert_2011, Thullier_1999 Corbett_2011, Cui_Z_2019, Chen_2011, DOKI_2016
12 Liu_H_2004 Recombinant scFv Antibodies against E Protein and N Protein of Severe Acute Respiratory Syndrome Virus Liu, Hui; Ding, Yan-Li; Han, Wei; Liu, Mei-Yun; Tian, Rui-Yang; Yang, Sheng-Li; Gong, Yi 2004 2004-08-23 PMC N PMC7110246 15295646.0 10.1093/abbs/36.8.541 qtt8athd 0.503778 Okda_2017, Nagesha_2001, Thullier_1999, Andoh_2015 Oleszak_1990, Li_S_2016, Xing_2009
13 Bagheri_2017 Neutralizing human recombinant antibodies against herpes simplex virus type 1 glycoproteins B from a phage-displayed scFv antibody library Bagheri, Vahid; Nejatollahi, Foroogh; Esmaeili, Seyed Alireza; Momtazi, Amir Abbas; Motamedifar, Mohamad; Sahebkar, Amirhossein 2017 2017-01-15 PMC N PMC7094719 27888111.0 10.1016/j.lfs.2016.11.018 2vcy0f6i 0.494359 Okda_2017, Hu_W_2013, Nagesha_2001 Zou_N_2015, Zhang_2019
14 Lee_Y_2007 Chicken single-chain variable fragments against the SARS-CoV spike protein Lee, Yu-Ching; Leu, Sy-Jye C.; Hu, Chaur-Jong; Shih, Neng-Yao; Huang, I-Jen; Wu, Hsueh-Hsia; Hsieh, Wen-Shyang; Chiang, Bor-Luen; Chiu, Wen-Ta; Yang, Yi-Yuan 2007 2007-12-31 PMC N PMC7112778 17643500.0 10.1016/j.jviromet.2007.06.010 asjvf123 0.488237 Nagesha_2001, Okda_2017, Thullier_1999 Lee_Y_2007, Elshabrawy_2012, Yu_X_2005
15 Batonick_2016 pMINERVA: A Donor-Acceptor System for the in vivo Recombineering of scFv into IgG Molecules Batonick, M; Kiss, MM; Fuller, EP; Magadan, CM; Holland, EG; Zhao, Q; Wang, D; Kay, BK; Weiner, MP 2016 2016-04-01 PMC N PMC4792691 26851519.0 10.1016/j.jim.2016.02.003 xx62m7kc 0.480154 Nagesha_2001 Tachibana_2011, Sun_D_2012
16 Feng_2018 Construction and next-generation sequencing analysis of a large phage-displayed V(NAR) single-domain antibody library from six naïve nurse sharks Feng, Mingqian; Bian, Hejiao; Wu, Xiaolin; Fu, Tianyun; Fu, Ying; Hong, Jessica; Fleming, Bryan D; Flajnik, Martin F; Ho, Mitchell 2018 2018-11-07 NONCOMM N PMC6312525 30627698.0 10.1093/abt/tby011 wc6k06sm 0.478705 Nagesha_2001, Okda_2017, Tiller_2008 Sun_D_2012, Zou_N_2015
17 Stadlmann_2015 Novel avian single-chain fragment variable (scFv) targets dietary gluten and related natural grain prolamins, toxic entities of celiac disease Stadlmann, Valerie; Harant, Hanna; Korschineck, Irina; Hermann, Marcela; Forster, Florian; Missbichler, Albert 2015 2015-12-01 COMM-USE N PMC4666168 26625857.0 10.1186/s12896-015-0223-z un7k5bfs 0.477095 Nagesha_2001, Thullier_1999, Okda_2017, Cheng_2011, Andoh_2015 Sun_D_2012
18 Schofield_1996 Determination of affinities of a panel of IgGs and Fabs for whole enveloped (influenza A) virions using surface plasmon resonance Schofield, D.J.; Dimmock, N.J. 1996 1996-10-31 PMC N PMC7119561 8910646.0 10.1016/0166-0934(96)02086-1 7r3td7cx 0.474647 Thullier_1999, Okda_2017, Coughlin_2009 Thullier_1999, Oleszak_1990
19 Wu_D_2011 Phage Displayed Peptides to Avian H5N1 Virus Distinguished the Virus from Other Viruses Wu, Dan; Li, Guangxing; Qin, Chengfeng; Ren, Xiaofeng 2011 2011-08-22 COMM-USE N PMC3161733 21887228.0 10.1371/journal.pone.0023058 tg8jdol5 0.447764 Wang_2011, Xing_2009
20 Kumar_2012 A novel strategy for efficient production of anti-V3 human scFvs against HIV-1 clade C Kumar, Rajesh; Andrabi, Raiees; Tiwari, Ashutosh; Prakash, Somi Sankaran; Wig, Naveet; Dutta, Durgashree; Sankhyan, Anurag; Khan, Lubina; Sinha, Subrata; Luthra, Kalpana 2012 2012-11-15 COMM-USE N PMC3536577 23153214.0 10.1186/1472-6750-12-87 rrezynbs 0.424010 Nagesha_2001, Okda_2017 Andrabi_2012, Chen_2011, Corti_2010
21 Wang_2013 Phages bearing affinity peptides to severe acute respiratory syndromes-associated coronavirus differentiate this virus from other viruses Wang, Chao; Sun, Xuejiao; Suo, Siqingaowa; Ren, Yudong; Li, Xunliang; Herrler, Georg; Thiel, Volker; Ren, Xiaofeng 2013 2013-08-31 PMC N PMC7108448 23664850.0 10.1016/j.jcv.2013.04.002 pljjd1p8 0.422028 Wu_D_2011 Elshabrawy_2012, Wang_2011
22 Lim_S_2018 Plant-derived chimeric antibodies inhibit the invasion of human fibroblasts by Toxoplasma gondii Lim, Sherene Swee Yin; Chua, Kek Heng; Nölke, Greta; Spiegel, Holger; Goh, Wai Leong; Chow, Sek Chuen; Kee, Boon Pin; Fischer, Rainer; Schillberg, Stefan; Othman, Rofina Yasmin 2018 2018-12-11 COMM-USE N PMC6294049 30581655.0 10.7717/peerj.5780 owwj24sx 0.420591 Ferreira_Júnior_2012
23 Nagesha_2001 A single chain Fv antibody displayed on phage surface recognises conformational group-specific epitope of bluetongue virus Nagesha, H.S; Wang, L.-F; Shiell, B; Beddome, G; White, J.R; Irving, R.A 2001 2001-02-28 PMC N 11164502.0 10.1016/s0166-0934(00)00266-4 hlthvadj 0.413346 Okda_2017, Thullier_1999, Sun_D_2012
24 Bhatti_1999 Production and characterization of anti-peptide monoclonal antibodies with specificity for staphylococcal enterotoxins A and B Bhatti, A.R.; Micusan, V.V. 1999 1999-03-31 PMC N PMC7133826 10192046.0 10.1016/s0167-7012(98)00110-9 d81zeql3 0.408859 Okda_2017, Thullier_1999, Gubbins_2006, Hu_W_2013 Gubbins_2006, Corbett_2011
25 Kaplan_2012 A general insert label for peptide display on chimeric filamentous bacteriophages Kaplan, Gilad; Gershoni, Jonathan M. 2012 2012-01-01 PMC N PMC7094602 21945353.0 10.1016/j.ab.2011.08.050 w307jg4w 0.404485 Batonick_2016
26 Peipp_2001 An improved procedure for the generation of recombinant single-chain Fv antibody fragments reacting with human CD13 on intact cells Peipp, Matthias; Simon, Nicola; Loichinger, Alexandra; Baum, Wolfgang; Mahr, Kerstin; Zunino, Susan J.; Fey, Georg H. 2001 2001-05-01 PMC N 11292491.0 10.1016/s0022-1759(01)00298-8 69bovl8q 0.404282 Nagesha_2001, Thullier_1999, Tiller_2008, Okda_2017
27 Zhu_Q_2013 Expression and Purification of the scFv from Hybridoma Cells Secreting a Monoclonal Antibody Against S Protein of PEDV Zhu, Qinghe; Guo, Donghua; Feng, Li; Sun, Dongbo 2013 2013-02-01 PMC N PMC4014299 23600505.0 10.1089/mab.2012.0089 hsreiigy 0.398824 Nagesha_2001, Shenyang_2007 Zhang_2010, Rimstad_1995
28 Cheng_2005 Cross-reactivity of antibody against SARS-coronavirus nucleocapsid protein with IL-11 Cheng, Man; Chan, Ceci W.L.; Cheung, Randy C.F.; Bikkavilli, Rama Kamesh; Zhao, Qi; Au, Shannon W.N.; Chan, Paul K.S.; Lee, Susanna S.T.; Cheng, Gregory; Ho, Walter K.K.; Cheung, Wing-Tai 2005 2005-12-23 PMC N PMC7092895 16263078.0 10.1016/j.bbrc.2005.10.088 tlnao8y3 0.396783 Okda_2017, Thullier_1999, Andoh_2015, Nagesha_2001 Zhao_2005, Liu_S_2006, Oleszak_1990
29 Liu_J_2006 Production of an Anti-Severe Acute Respiratory Syndrome (SARS) Coronavirus Human Monoclonal Antibody Fab Fragment by Using a Combinatorial Immunoglobulin Gene Library Derived from Patients Who Recovered from SARS Liu, Jinye; Shao, Hongxia; Tao, Yanlin; Yang, Bin; Qian, Lisheng; Yang, Xiaoli; Cao, Brian; Hu, Gengxi; Tachibana, Hiroshi; Cheng, Xunjia 2006 2006-05-01 None N PMC1459658 16682481.0 10.1128/cvi.13.5.594-597.2006 wc0b6ajt 0.386639 Nagesha_2001, Okda_2017, Thullier_1999 Kang_2006, Lee_Y_2007, Elshabrawy_2012, Yu_X_2005
30 Zou_H_2013 Transmissible gastroenteritis virus: Identification of M protein-binding peptide ligands with antiviral and diagnostic potential Zou, Hao; Zarlenga, Dante S.; Sestak, Karol; Suo, Siqingaowa; Ren, Xiaofeng 2013 2013-09-30 PMC N PMC7114267 23830854.0 10.1016/j.antiviral.2013.06.015 59d4aojh 0.382892 Xing_2009
31 Thullier_1999 A recombinant Fab neutralizes dengue virus in vitro Thullier, P; Lafaye, P; Mégret, F; Deubel, V; Jouan, A; Mazié, J.C 1999 1999-04-15 PMC N PMC7125516 10361725.0 10.1016/s0168-1656(99)00037-1 rswvt9wd 0.369791 Nagesha_2001, Okda_2017, Deregt_1987, Hu_W_2013 Chen_2011, Oleszak_1990
32 Peng_2006 Identification of one peptide which inhibited infectivity of avian infectious bronchitis virus in vitro Peng, Bo; Chen, Hanyang; Tan, Yadi; Jin, Meilin; Chen, Huanchun; Guo, Aizhen 2006 2006-03-25 PMC N PMC7088975 16704119.0 10.1007/s11427-006-0158-7 c1k2nnyv 0.369540 Zou_N_2015
33 Fatima_2014 Development of VHH Antibodies against Dengue Virus Type 2 NS1 and Comparison with Monoclonal Antibodies for Use in Immunological Diagnosis Fatima, Aneela; Wang, Haiying; Kang, Keren; Xia, Liliang; Wang, Ying; Ye, Wei; Wang, Jufang; Wang, Xiaoning 2014 2014-04-21 COMM-USE N PMC3994031 24751715.0 10.1371/journal.pone.0095263 c7xvf6dm 0.360222 Okda_2017, Nagesha_2001, Hu_W_2013, Thullier_1999 Hua_R_2013, Oleszak_1990
34 Flego_2019 Intracellular human antibody fragments recognizing the VP35 protein of Zaire Ebola filovirus inhibit the protein activity Flego, Michela; Frau, Aldo; Accardi, Luisa; Mallano, Alessandra; Ascione, Alessandro; Gellini, Mara; Fanunza, Elisa; Vella, Stefano; Di Bonito, Paola; Tramontano, Enzo 2019 2019-09-05 COMM-USE N PMC6727353 31488108.0 10.1186/s12896-019-0554-2 mbrw85og 0.360169 Oleszak_1990, Chen_2011
35 Rodríguez-Martínez_2015 Antibody Derived Peptides for Detection of Ebola Virus Glycoprotein Rodríguez-Martínez, Luis Mario; Marquez-Ipiña, Alan Roberto; López-Pacheco, Felipe; Pérez-Chavarría, Roberto; González-Vázquez, Juan Carlos; González-González, Everardo; Trujillo-de Santiago, Grissel; Ponce-Ponce de León, César Alejandro; Zhang, Yu Shrike; Dokmeci, Mehmet Remzi; Khademhosseini, Ali; Alvarez, Mario Moisés 2015 2015-10-21 COMM-USE N PMC4619498 26489048.0 10.1371/journal.pone.0135859 m31mb2kr 0.357044 Hu_W_2013, Okda_2017 Xing_2009
36 Chan_2011 Comparison of the efficiency of antibody selection from semi-synthetic scFv and non-immune Fab phage display libraries against protein targets for rapid development of diagnostic immunoassays Chan, Conrad E.Z.; Chan, Annie H.Y.; Lim, Angeline P.C.; Hanson, Brendon J. 2011 2011-10-28 PMC N PMC7094349 21856306.0 10.1016/j.jim.2011.08.005 wtm2rk9u 0.356061 Unkauf_2016, Tiller_2008 Tachibana_2011, Kumar_2012, Lee_S_2017
37 Tachibana_2011 Production of Antibody Fab Fragments in Escherichia coli Tachibana, Hiroshi; Takekoshi, Masataka 2011 2011-05-06 PMC N PMC7121915 10.1007/978-94-007-1257-7_8 4lmsl1qv 0.342647 Unkauf_2016, Nagesha_2001, Tiller_2008 Thullier_1999, Batonick_2016
38 Diebolder_2014 Generation of “LYmph Node Derived Antibody Libraries” (LYNDAL) for selecting fully human antibody fragments with therapeutic potential Diebolder, Philipp; Keller, Armin; Haase, Stephanie; Schlegelmilch, Anne; Kiefer, Jonathan D; Karimi, Tamana; Weber, Tobias; Moldenhauer, Gerhard; Kehm, Roland; Eis-Hübinger, Anna M; Jäger, Dirk; Federspil, Philippe A; Herold-Mende, Christel; Dyckhoff, Gerhard; Kontermann, Roland E; Arndt, Michaela AE; Krauss, Jürgen 2014 2014-01-01 NONCOMM N PMC3929437 24256717.0 10.4161/mabs.27236 ip8jd6ph 0.328907 Okda_2017, Hu_W_2013, Nagesha_2001 Chen_2011, Kumar_2012, Corti_2010
39 HUA_R_2006 Identification of a Mimotope Peptide Bound to the SARS-CoV Spike Protein Specific Monoclonal Antibody 2C5 with Phage-displayed Peptide Library HUA, Rong-Hong; WU, Dong-Lai; TONG, Guang-Zhi; WANG, Yun-Feng; TIAN, Zhi-Jun; ZHOU, Yan-Jun 2006 2006-09-30 PMC N PMC7147893 17037189.0 10.1016/s1872-2075(06)60051-4 q02fq403 0.318880 Okda_2017, Hu_W_2013, Nagesha_2001, Thullier_1999 Ti_J_2017, Lee_Y_2007
40 Zeng_2020 Blocking antibodies against SARS-CoV-2 RBD isolated from a phage display antibody library using a competitive biopanning strategy Xin Zeng; Lingfang Li; Jing Lin; Xinlei Li; Bin Liu; Yang Kong; Shunze Zeng; Jianhua Du; Huahong Xiao; Tao Zhang; Shelin Zhang; Jianghai Liu 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.19.049643 4w6caxwu 0.313216 Coughlin_2009, Okda_2017, Cruz_2006
41 Gubbins_2006 Production and characterization of neutralizing monoclonal antibodies that recognize an epitope in domain 2 of Bacillus anthracis protective antigen Gubbins, Michael J.; Berry, Jody D.; Corbett, Cindi R.; Mogridge, Jeremy; Yuan, Xin Y.; Schmidt, Lisa; Nicolas, Brigitte; Kabani, Amin; Tsang, Raymond S. 2006 2006-08-01 PMC N PMC7110350 16872381.0 10.1111/j.1574-695x.2006.00114.x qgov4rqq 0.309930 Okda_2017, Hu_W_2013, Deregt_1987, de_Alwis_2011
42 Zhang_2019 Construction and characterization of porcine single-chain fragment variable antibodies that neutralize transmissible gastroenteritis virus in vitro Zhang, Fanqing; Chen, Yuxue; Yang, Liang; Zhu, Jianguo 2019 2019-02-07 PMC N PMC7087081 30729994.0 10.1007/s00705-019-04156-6 k0l4810i 0.302000 Hu_W_2013 Chen_2011, Zou_N_2015