Topic 06 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 18 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Zhao_2020 Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak Zhao, Shi; Lin, Qianyin; Ran, Jinjun; Musa, Salihu S.; Yang, Guangpu; Wang, Weiming; Lou, Yijun; Gao, Daozhou; Yang, Lin; He, Daihai; Wang, Maggie H. 2020 2020-01-01 None Y PMC7110798 32007643.0 10.1016/j.ijid.2020.01.050 drqnrwdl 0.900936 batista_2020, Tomie_2020, Scheuerl_2020, Griette_2020 Zhao_2020, Wang_2020
2 Zhao_2020 Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak Shi Zhao; Qianyin Lin; Jinjun Ran; Salihu S Musa; Guangpu Yang; Weiming Wang; Yijun Lou; Daozhou Gao; Lin Yang; Daihai He; Maggie H Wang 2020 2020-01-24 BioRxiv Y 10.1101/2020.01.23.916395 px70bft2 0.778278 batista_2020, Tomie_2020, Scheuerl_2020 Zhao_2020, Liu_T_2020
3 Zhang_2020 Dynamic Estimation of Epidemiological Parameters of COVID-19 Outbreak and Effects of Interventions on Its Spread Hongzhe Zhang; Xiaohang Zhao; Kexin Yin; Yiren Yan; Wei Qian; Bintong Chen; Xiao Fang 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.01.20050310 ff4937mj 0.742319 Muniz-Rodriguez_2020, Du_Z_2020 Hou_J_2020
4 Menkir_2020 Estimating the number of undetected COVID-19 cases exported internationally from all of China Tigist Ferede Menkir; Taylor Chin; James A Hay; Erik Surface; Pablo Martinez de Salazar; Caroline Buckee; Michael J Mina; Kamran Khan; Alexander Watts; Marc Lipsitch; Rene Niehus 2020 2020-03-26 BioRxiv Y 10.1101/2020.03.23.20038331 q96nsa22 0.717559
5 Quilty_2020 The effect of inter-city travel restrictions on geographical spread of COVID-19: Evidence from Wuhan, China Billy J Quilty; Charlie Diamond; Yang Liu; Hamish Gibbs; Timothy W Russell; Christopher I Jarvis; Kiesha Prem; Carl A B Pearson; Samuel J Clifford; Stefan Flasche; Petra Klepac; Rosalind M Eggo; Mark Jit 2020 2020-04-21 BioRxiv Y 10.1101/2020.04.16.20067504 6kiv3qi5 0.680598
6 Salazar_2020 Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases Pablo M De Salazar; Rene Niehus; Aimee Taylor; Caroline O Buckee; Marc Lipsitch 2020 2020-02-05 BioRxiv Y 10.1101/2020.02.04.20020495 9fd5a49o 0.671652 Teles_2020, Chinazzi_2020
7 Wu_J_2020 Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study Wu, Joseph T; Leung, Kathy; Leung, Gabriel M 2020 2020-03-06 PMC Y PMC7159271 32014114.0 10.1016/s0140-6736(20)30260-9 32v44sw9 0.651069 Ma_X_2020, Lin_Q_2020 Ji_X_2020, Lin_B_2020, He_J_2020, Wang_2020
8 Read_2020 Novel coronavirus 2019-nCoV: early estimation of epidemiological parameters and epidemic predictions Jonathan M Read; Jessica RE Bridgen; Derek AT Cummings; Antonia Ho; Chris P Jewell 2020 2020-01-24 BioRxiv Y 10.1101/2020.01.23.20018549 mt8h4rk5 0.635860 Muniz-Rodriguez_2020, Du_Z_2020
9 Omori_2020 Ascertainment rate of novel coronavirus disease (COVID-19) in Japan Ryosuke Omori; Kenji Mizumoto; Hiroshi Nishiura 2020 2020-03-10 BioRxiv Y 10.1101/2020.03.09.20033183 0d6o5w8z 0.633567 Muniz-Rodriguez_2020 Tian_2020, Wang_2020
10 Zhao_2020 Estimating the Unreported Number of Novel Coronavirus (2019-nCoV) Cases in China in the First Half of January 2020: A Data-Driven Modelling Analysis of the Early Outbreak Zhao, Shi; Musa, Salihu S.; Lin, Qianying; Ran, Jinjun; Yang, Guangpu; Wang, Weiming; Lou, Yijun; Yang, Lin; Gao, Daozhou; He, Daihai; Wang, Maggie H. 2020 2020-01-01 COMM-USE Y PMC7074332 32024089.0 10.3390/jcm9020388 l8bv5t3o 0.633179 Bassetti_2020, Ralph_2020
11 Gao_Y_2020 Forecasting the cumulative number of COVID-19 deaths in China: a Boltzmann function-based modeling study Gao, Yuanyuan; Zhang, Zuqin; Yao, Wei; Ying, Qi; Long, Cheng; Fu, Xinmiao 2020 2020-04-02 None Y PMC7163192 32238216.0 10.1017/ice.2020.101 07zfhnwi 0.627199 Muniz-Rodriguez_2020
12 Zhuang_2020 Estimation of local novel coronavirus (COVID-19) cases in Wuhan, China from off-site reported cases and population flow data from different sources Zian Zhuang; Peihua Cao; Shi Zhao; Yijun Lou; Weiming Wang; Shu Yang; Lin Yang; Daihai He 2020 2020-03-02 BioRxiv Y 10.1101/2020.03.02.20030080 4f84pc83 0.624947 Ma_X_2020, Du_Z_2020, Amodio_2020 Tian_2020, Wang_2020
13 Nishiura_2020 The Extent of Transmission of Novel Coronavirus in Wuhan, China, 2020 Nishiura, Hiroshi; Jung, Sung-mok; Linton, Natalie M.; Kinoshita, Ryo; Yang, Yichi; Hayashi, Katsuma; Kobayashi, Tetsuro; Yuan, Baoyin; Akhmetzhanov, Andrei R. 2020 2020-01-01 COMM-USE Y PMC7073674 31991628.0 10.3390/jcm9020330 cg4ess9h 0.600596 Scheuerl_2020 Zhu_N_2020, Cheng_2020, Bassetti_2020
14 Lytras_2020 Estimating the ascertainment rate of SARS-CoV-2 infection in Wuhan, China: implications for management of the global outbreak Theodore Lytras; Georgios Panagiotakopoulos; Sotirios Tsiodras 2020 2020-03-26 BioRxiv Y 10.1101/2020.03.24.20042218 xhnv5cje 0.462385
15 Chinazzi_2020 The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak Chinazzi, Matteo; Davis, Jessica T.; Ajelli, Marco; Gioannini, Corrado; Litvinova, Maria; Merler, Stefano; Pastore y Piontti, Ana; Mu, Kunpeng; Rossi, Luca; Sun, Kaiyuan; Viboud, Cécile; Xiong, Xinyue; Yu, Hongjie; Halloran, M. Elizabeth; Longini, Ira M.; Vespignani, Alessandro 2020 2020-03-06 None Y PMC7164386 32144116.0 10.1126/science.aba9757 pq75mafr 0.438940 He_J_2020
16 Du_Z_2020 Risk for Transportation of 2019 Novel Coronavirus (COVID-19) from Wuhan to Cities in China Zhanwei Du; Ling Wang; Simon Cauchemez; Xiaoke Xu; Xianwen Wang; Benjamin J Cowling; Lauren Ancel Meyers 2020 2020-01-30 BioRxiv Y 10.1101/2020.01.28.20019299 mbdj3r0m 0.433001 Muniz-Rodriguez_2020, Gao_Y_2020 Cheng_2020, Huang_2020, Zhu_N_2020
17 Riou_2020 Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020 Riou, Julien; Althaus, Christian L. 2020 2020-01-30 COMM-USE Y PMC7001239 32019669.0 10.2807/1560-7917.es.2020.25.4.2000058 zz4cczuj 0.426620 Cheng_2020, Zhu_N_2020, Devaux_2020
18 Tuite_2020 Estimation of COVID-2019 burden and potential for international dissemination of infection from Iran Ashleigh R. Tuite; Isaac Bogoch; Ryan Sherbo; Alexander Watts; David N. Fisman; Kamran Khan 2020 2020-02-25 BioRxiv Y 10.1101/2020.02.24.20027375 of9wlhga 0.426124 He_J_2020, Memish_2020
19 Kucharski_2020 Early dynamics of transmission and control of COVID-19: a mathematical modelling study Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M; Sun, Fiona; Jit, Mark; Munday, James D; Davies, Nicholas; Gimma, Amy; van Zandvoort, Kevin; Gibbs, Hamish; Hellewell, Joel; Jarvis, Christopher I; Clifford, Sam; Quilty, Billy J; Bosse, Nikos I; Abbott, Sam; Klepac, Petra; Flasche, Stefan 2020 2020-03-11 PMC Y 10.1016/s1473-3099(20)30144-4 uvavdk6n 0.424050 Ma_X_2020, Lin_Q_2020 Hou_J_2020
20 Wang_2020 Strongly heterogeneous transmission of COVID-19 in mainland China: local and regional variation Yuke Wang; Peter F.M. Teunis 2020 2020-03-16 BioRxiv Y 10.1101/2020.03.10.20033852 j181i5pr 0.423580 Jin_G_2020, Tomie_2020, Lin_Q_2020 He_J_2020, Ping_2020
21 Lai_S_2020 Assessing spread risk of Wuhan novel coronavirus within and beyond China, January-April 2020: a travel network-based modelling study Shengjie Lai; Isaac Bogoch; Nick Ruktanonchai; Alexander Watts; Xin Lu; Weizhong Yang; Hongjie Yu; Kamran Khan; Andrew J Tatem 2020 2020-02-05 BioRxiv Y 10.1101/2020.02.04.20020479 iat80b4l 0.395418 Wang_2020, He_J_2020, Ji_X_2020
22 Muniz-Rodriguez_2020 Epidemic doubling time of the COVID-19 epidemic by Chinese province Kamalich Muniz-Rodriguez; Gerardo Chowell; Chi-Hin Cheung; Dongyu Jia; Po-Ying Lai; Yiseul Lee; Manyun Liu; Sylvia K. Ofori; Kimberlyn M. Roosa; Lone Simonsen; Cecile G. Viboud; Isaac Chun-Hai Fung 2020 2020-02-06 BioRxiv Y 10.1101/2020.02.05.20020750 vpouyyev 0.395114 Gao_Y_2020 Liu_Q_2020, Hou_J_2020
23 Zhang_2020 Evolving epidemiology of novel coronavirus diseases 2019 and possible interruption of local transmission outside Hubei Province in China: a descriptive and modeling study Juanjuan Zhang; Maria Litvinova; Wei Wang; Yan Wang; Xiaowei Deng; Xinghui Chen; Mei Li; Wen Zheng; Lan Yi; Xinhua Chen; Qianhui Wu; Yuxia Liang; Xiling Wang; Juan Yang; Kaiyuan Sun; Ira M. Longini; M. Elizabeth Halloran; Peng Wu; Benjamin J. Cowling; Stefano Merler; Cecile Viboud; Alessandro Vespignani; Marco Ajelli; Hongjie Yu 2020 2020-02-23 BioRxiv Y 10.1101/2020.02.21.20026328 ragcpbl6 0.370841 Lin_Q_2020, Muniz-Rodriguez_2020, Ma_X_2020, Tomie_2020 Zhang_2020, Wang_2020
24 Kumar_2020 Forecasting COVID-19 impact in India using pandemic waves Nonlinear Growth Models Pavan Kumar; Ram Kumar Singh; Chintan Nanda; Himangshu Kalita; Shashikanta Patairiya; Yagya Datt Sharma; Meenu Rani; Akshaya Srikanth Bhagavathula 2020 2020-04-02 BioRxiv Y 10.1101/2020.03.30.20047803 b9p5tqhl 0.351356 Hou_J_2020
25 Shi_Z_2020 Temporal relationship between outbound traffic from Wuhan and the 2019 coronavirus disease (COVID-19) incidence in China Zaixing Shi; Ya Fang 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.15.20034199 hrrzztt5 0.350303 Ma_X_2020, Lin_Q_2020, Jin_G_2020 Chen_2020, He_J_2020
26 Cao_Z_2020 Incorporating Human Movement Data to Improve Epidemiological Estimates for 2019-nCoV Zhidong Cao; Qingpeng Zhang; Xin Lu; Dirk Pfeiffer; Lei Wang; Hongbing Song; Tao Pei; Zhongwei Jia; Daniel Dajun Zeng 2020 2020-02-09 BioRxiv Y 10.1101/2020.02.07.20021071 q14x0i2c 0.350139 Lin_Q_2020 Hou_J_2020
27 Ping_2020 Epidemiologic Characteristics of COVID-19 in Guizhou, China Kaike Ping 2020 2020-03-06 BioRxiv Y 10.1101/2020.03.01.20028944 tne83uu0 0.342129 Tomie_2020, Lin_Q_2020 Tian_2020, He_J_2020
28 Zhang_2020 Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study Zhang, Juanjuan; Litvinova, Maria; Wang, Wei; Wang, Yan; Deng, Xiaowei; Chen, Xinghui; Li, Mei; Zheng, Wen; Yi, Lan; Chen, Xinhua; Wu, Qianhui; Liang, Yuxia; Wang, Xiling; Yang, Juan; Sun, Kaiyuan; Longini, Ira M; Halloran, M Elizabeth; Wu, Peng; Cowling, Benjamin J; Merler, Stefano; Viboud, Cecile; Vespignani, Alessandro; Ajelli, Marco; Yu, Hongjie 2020 2020-04-02 PMC Y 10.1016/s1473-3099(20)30230-9 ur7tu7g1 0.340832 Ma_X_2020, Lin_Q_2020, Tomie_2020 Zhang_2020
29 Bogoch_2020 Potential for global spread of a novel coronavirus from China Bogoch, Isaac I; Watts, Alexander; Thomas-Bachli, Andrea; Huber, Carmen; Kraemer, Moritz U G; Khan, Kamran 2020 2020-01-27 None Y PMC7074660 31985790.0 10.1093/jtm/taaa011 9fkrf3tf 0.339232 Wilson_2020, Salata_2020
30 Wu_P_2020 Real-time tentative assessment of the epidemiological characteristics of novel coronavirus infections in Wuhan, China, as at 22 January 2020 Wu, Peng; Hao, Xinxin; Lau, Eric H Y; Wong, Jessica Y; Leung, Kathy S M; Wu, Joseph T; Cowling, Benjamin J; Leung, Gabriel M 2020 2020-01-23 COMM-USE Y PMC6988272 31992388.0 10.2807/1560-7917.es.2020.25.3.2000044 0rxtati9 0.336636 Cheng_2020, Ai_J_2020
31 Fu_X_2020 Simulating and Forecasting the Cumulative Confirmed Cases of SARS-CoV-2 in China by Boltzmann Function-based Regression Analyses Xinmiao Fu; Qi Ying; Tieyong Zeng; Tao Long; Yan Wang 2020 2020-02-18 BioRxiv Y 10.1101/2020.02.16.20023564 9j5yda3k 0.336506 Lin_Q_2020, Tomie_2020, Jin_G_2020
32 Li_J_2020 Estimation of the epidemic properties of the 2019 novel coronavirus: A mathematical modeling study Jinghua Li; Yijing Wang; Stuart Gilmour; Mengying Wang; Daisuke Yoneoka; Ying Wang; Xinyi You; Jing Gu; Chun Hao; Liping Peng; Zhicheng Du; Dong Roman Xu; Yuantao Hao 2020 2020-02-20 BioRxiv Y 10.1101/2020.02.18.20024315 nzynerfu 0.336176 Ma_X_2020 Wang_2020
33 Li_Q_2020 Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia Li, Qun; Guan, Xuhua; Wu, Peng; Wang, Xiaoye; Zhou, Lei; Tong, Yeqing; Ren, Ruiqi; Leung, Kathy S.M.; Lau, Eric H.Y.; Wong, Jessica Y.; Xing, Xuesen; Xiang, Nijuan; Wu, Yang; Li, Chao; Chen, Qi; Li, Dan; Liu, Tian; Zhao, Jing; Liu, Man; Tu, Wenxiao; Chen, Chuding; Jin, Lianmei; Yang, Rui; Wang, Qi; Zhou, Suhua; Wang, Rui; Liu, Hui; Luo, Yinbo; Liu, Yuan; Shao, Ge; Li, Huan; Tao, Zhongfa; Yang, Yang; Deng, Zhiqiang; Liu, Boxi; Ma, Zhitao; Zhang, Yanping; Shi, Guoqing; Lam, Tommy T.Y.; Wu, Joseph T.; Gao, George F.; Cowling, Benjamin J.; Yang, Bo; Leung, Gabriel M.; Feng, Zijian 2020 2020-03-26 None Y PMC7121484 31995857.0 10.1056/nejmoa2001316 e9rt7z8d 0.315463 Muniz-Rodriguez_2020, Du_Z_2020 Wang_2020
34 Zhao_2020 Epidemic size of novel coronavirus-infected pneumonia in the Epicenter Wuhan: using data of five-countries' evacuation action Hongxin Zhao; Sailimai Man; Bo Wang; Yi Ning 2020 2020-02-13 BioRxiv Y 10.1101/2020.02.12.20022285 j60j7e9b 0.311084 Lin_Q_2020, Ma_X_2020 Wang_2020, He_J_2020, Wang_2020
35 Tang_2020 Lessons drawn from China and South Korea for managing COVID-19 epidemic: insights from a comparative modeling study Biao Tang; Fan Xia; Nicola Luigi Bragazzi; Xia Wang; Sha He; Xiaodan Sun; Sanyi Tang; Yanni Xiao; Jianhong Wu 2020 2020-03-13 BioRxiv Y 10.1101/2020.03.09.20033464 z7r45291 0.308135 He_J_2020, Wang_2020, Ji_X_2020, Zareie_2020
36 FANG_2020 Human Mobility Restrictions and the Spread of the Novel Coronavirus (2019-nCoV) in China HANMING FANG; LONG WANG; YANG YANG 2020 2020-03-26 BioRxiv Y 10.1101/2020.03.24.20042424 ucwuptgg 0.306831 Lin_Q_2020, Jin_G_2020 Ai_S_2020