Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 16 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Fang_2009 Geographical spread of SARS in mainland China Fang, Li‐Qun; De Vlas, Sake J.; Feng, Dan; Liang, Song; Xu, You‐Fu; Zhou, Jie‐Ping; Richardus, Jan Hendrik; Cao, Wu‐Chun 2009 2009-06-05 PMC N PMC7169839 19508436.0 10.1111/j.1365-3156.2008.02189.x fo83f99f 0.934119 Lim_T_2012, Georgiev_2009
2 Zhang_2015 Cluster of Human Infections with Avian Influenza A (H7N9) Cases: A Temporal and Spatial Analysis Zhang, Yi; Shen, Zhixiong; Ma, Chunna; Jiang, Chengsheng; Feng, Cindy; Shankar, Nivedita; Yang, Peng; Sun, Wenjie; Wang, Quanyi 2015 2015-01-15 COMM-USE N PMC4306894 25599373.0 10.3390/ijerph120100816 2fghuov2 0.918930 Lim_T_2012 Dias_2019
3 Hu_B_2012 Spatial-temporal characteristics of epidemic spread in-out flow—Using SARS epidemic in Beijing as a case study Hu, BiSong; Gong, JianHua; Zhou, JiePing; Sun, Jun; Yang, LiYang; Xia, Yu; Ibrahim, Abdoul Nasser 2012 2012-10-27 PMC N PMC7104600 10.1007/s11430-012-4479-z la6xtpjf 0.864765 Lim_T_2012
4 Al-Ahmadi_2019 Spatiotemporal Clustering of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Incidence in Saudi Arabia, 2012–2019 Al-Ahmadi, Khalid; Alahmadi, Sabah; Al-Zahrani, Ali 2019 2019-07-15 COMM-USE N PMC6678379 31311073.0 10.3390/ijerph16142520 3nfukrfl 0.804304 Lim_T_2012, Georgiev_2009, Wang_2014
5 Yang_2014 Establishing and Applying a Schistosomiasis Early Warning Index (SEWI) in the Lower Yangtze River Region of Jiangsu Province, China Yang, Kun; Xu, Jun-Fang; Zhang, Jian-Feng; Li, Wei; He, Jian; Liang, Song; Bergquist, Robert 2014 2014-04-04 COMM-USE N PMC3976384 24705352.0 10.1371/journal.pone.0094012 eqfj9iyr 0.668932 Pai_M_2006
6 Alkhamis_2018 Temporal dynamics of Middle East respiratory syndrome coronavirus in the Arabian Peninsula, 2012–2017 Alkhamis, M. A.; Fernández-Fontelo, A.; VanderWaal, K.; Abuhadida, S.; Puig, P.; Alba-Casals, A. 2018 2018-10-08 COMM-USE N PMC6518552 30293534.0 10.1017/s0950268818002728 sdd6lvqv 0.665529 Lim_T_2012, Wang_2014, Georgiev_2009
7 Rao_H_2017 Using the Kulldorff’s scan statistical analysis to detect spatio-temporal clusters of tuberculosis in Qinghai Province, China, 2009–2016 Rao, Huaxiang; Shi, Xinyu; Zhang, Xi 2017 2017-08-21 COMM-USE N PMC5563899 28826399.0 10.1186/s12879-017-2643-y l56qcbat 0.660959 Lim_T_2012 Zhao_2013, Mao_Y_2019, Tao_N_2019
8 Georgiev_2009 Severe Acute Respiratory Syndrome Georgiev, Vassil St. 2009 2009-01-01 PMC N PMC7121260 10.1007/978-1-60327-297-1_12 6jwu7gyf 0.647356 Lim_T_2012, Wang_2014 Kato_2019
9 Zhao_2013 Space-Time Clustering Characteristics of Tuberculosis in China, 2005-2011 Zhao, Fei; Cheng, Shiming; He, Guangxue; Huang, Fei; Zhang, Hui; Xu, Biao; Murimwa, Tonderayi C.; Cheng, Jun; Hu, Dongmei; Wang, Lixia 2013 2013-12-19 COMM-USE N PMC3868653 24367604.0 10.1371/journal.pone.0083605 z11pgpft 0.622074 Lim_T_2012 Tao_N_2019, Lo_H_2011, Rao_H_2017, Mao_Y_2019
10 Arruda_2017 Estimation of Time-Dependent Reproduction Numbers for Porcine Reproductive and Respiratory Syndrome across Different Regions and Production Systems of the US Arruda, Andréia G.; Alkhamis, Moh A.; VanderWaal, Kimberly; Morrison, Robert B.; Perez, Andres M. 2017 2017-04-05 COMM-USE N PMC5380673 28424778.0 10.3389/fvets.2017.00046 mrz3s90w 0.621665 Lim_T_2012, Wang_2014
11 Faires_2014 The use of the temporal scan statistic to detect methicillin-resistant Staphylococcus aureus clusters in a community hospital Faires, Meredith C; Pearl, David L; Ciccotelli, William A; Berke, Olaf; Reid-Smith, Richard J; Weese, J Scott 2014 2014-07-08 COMM-USE N PMC4097048 25005247.0 10.1186/1471-2334-14-375 x5bzrpcu 0.617777
12 Zhang_2020 Comparison of the spatiotemporal characteristics of the COVID-19 and SARS outbreaks in mainland China Xi Zhang; Hua-Xiang Rao; Yuwan Wu; Yubei Huang; Hongji Dai 2020 2020-03-26 BioRxiv Y 10.1101/2020.03.23.20034058 brwmpm5a 0.575968 Lim_T_2012, Georgiev_2009, Wang_2014
13 Wen_T_2007 A Spatial-Temporal Approach to Differentiate Epidemic Risk Patterns Wen, Tzai-hung; Lin, Neal H; Lin, Katherine Chun-min; Fan, I-chun; Su, Ming-daw; King, Chwan-chuen 2007 2007-01-01 PMC N PMC7121663 10.1007/978-3-540-71318-0_16 q5cmwzr8 0.574354 Routledge_2019
14 Zhang_2004 The outbreak pattern of the SARS cases in Asia Zhang, Zhibin; Sheng, Chengfa; Ma, Zufei; Li, Dianmo 2004 2004-01-01 PMC N PMC7089107 10.1007/bf03183407 a346cjx4 0.557337 Lim_T_2012, Wang_2014, Georgiev_2009
15 Tewara_2018 Small-area spatial statistical analysis of malaria clusters and hotspots in Cameroon;2000–2015 Tewara, Marlvin Anemey; Mbah-Fongkimeh, Prisca Ngetemalah; Dayimu, Alimu; Kang, Fengling; Xue, Fuzhong 2018 2018-12-07 COMM-USE N PMC6286522 30526507.0 10.1186/s12879-018-3534-6 l7voruz7 0.544584 Lim_T_2012 Kandala_2006, Zhao_2013
16 Mehta_2020 Early Stage Prediction of US County Vulnerability to the COVID-19 Pandemic Mihir Mehta; Juxihong Julaiti; Paul Griffin; Soundar Kumara 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.06.20055285 901ghexi 0.513693
17 Moore_2005 A space–time cluster of adverse events associated with canine rabies vaccine Moore, George E.; Ward, Michael P.; Kulldorff, Martin; Caldanaro, Richard J.; Guptill, Lynn F.; Lewis, Hugh B.; Glickman, Lawrence T. 2005 2005-12-01 PMC N PMC7126521 16112259.0 10.1016/j.vaccine.2005.07.041 a1tvcgqj 0.482868 Dias_2019, Brady_2012
18 Magnusson_2017 Population‐based study showed that necrotising enterocolitis occurred in space–time clusters with a decreasing secular trend in Sweden Magnusson, Amanda; Ahle, Margareta; Swolin‐Eide, Diana; Elfvin, Anders; Andersson, Roland E. 2017 2017-04-24 PMC N PMC7159790 28349558.0 10.1111/apa.13851 93486y6e 0.477359
19 Li_X_2015 Risk Distribution of Human Infections with Avian Influenza H7N9 and H5N1 virus in China Li, Xin-Lou; Yang, Yang; Sun, Ye; Chen, Wan-Jun; Sun, Ruo-Xi; Liu, Kun; Ma, Mai-Juan; Liang, Song; Yao, Hong-Wu; Gray, Gregory C.; Fang, Li-Qun; Cao, Wu-Chun 2015 2015-12-22 COMM-USE N PMC4686887 26691585.0 10.1038/srep18610 4ovrrf62 0.471488
20 Lai_P_2015 Effects of geographic scale on population factors in acute disease diffusion analysis Lai, Poh-Chin; Chow, Chun Bong; Wong, Ho Ting; Kwong, Kim Hung; Liu, Shao Haei; Tong, Wah Kun; Cheung, Wai Keung; Wong, Wing Leung; Kwan, Yat Wah 2015 2015-10-31 PMC N PMC7148642 10.1016/j.joad.2015.06.006 e734j9m8 0.460969 Wen_T_2007, Routledge_2019
21 de_Oliveira_Cardoso_2010 Health surveillance, biosafety and emergence and re-emergence of infectious diseases in Brazil de Oliveira Cardoso, Telma Abdalla; de Albuquerque Navarro, Marli B.M.; Neto, Cristina Costa; Moreira, Josino Costa 2010 2010-10-31 PMC N 10.1016/s1413-8670(10)70105-7 shye7t8n 0.460557
22 Fang_2012 Distribution and Risk Factors of 2009 Pandemic Influenza A (H1N1) in Mainland China Fang, Li-Qun; Wang, Li-Ping; de Vlas, Sake J.; Liang, Song; Tong, Shi-Lu; Li, Yan-Li; Li, Ya-Pin; Qian, Quan; Yang, Hong; Zhou, Mai-Geng; Wang, Xiao-Feng; Richardus, Jan Hendrik; Ma, Jia-Qi; Cao, Wu-Chun 2012 2012-05-01 NONCOMM N PMC3339311 22491083.0 10.1093/aje/kwr411 zss38mct 0.451042 Lim_T_2012
23 Jia_N_2009 Case fatality of SARS in mainland China and associated risk factors Jia, Na; Feng, Dan; Fang, Li‐Qun; Richardus, Jan Hendrik; Han, Xiao‐Na; Cao, Wu‐Chun; De Vlas, Sake J. 2009 2009-06-05 PMC N PMC7169690 19508439.0 10.1111/j.1365-3156.2008.02147.x 1amtrm9p 0.449952 Lim_T_2012, Georgiev_2009
24 Desjardins_2020 Rapid surveillance of COVID-19 in the United States using a prospective space-time scan statistic: Detecting and evaluating emerging clusters Desjardins, M.R.; Hohl, A.; Delmelle, E.M. 2020 2020-05-31 PMC Y 10.1016/j.apgeog.2020.102202 y691hark 0.449322
25 Gay_E_2009 A nation-wide epidemiological study of acute bovine respiratory disease in France Gay, Emilie; Barnouin, Jacques 2009 2009-06-01 PMC N PMC7126910 19297044.0 10.1016/j.prevetmed.2009.02.013 qza71g8i 0.434927 Dias_2019
26 Arruda_2018 Time-series analysis for porcine reproductive and respiratory syndrome in the United States Arruda, Andréia Gonçalves; Vilalta, Carles; Puig, Pere; Perez, Andres; Alba, Anna 2018 2018-04-03 COMM-USE N PMC5882168 29614099.0 10.1371/journal.pone.0195282 4rqoenhr 0.410074 Lim_T_2012, Wang_2014 Arruda_2017
27 O’Hagan_2016 Estimation of Severe Middle East Respiratory Syndrome Cases in the Middle East, 2012–2016 O’Hagan, Justin J.; Carias, Cristina; Rudd, Jessica M.; Pham, Huong T.; Haber, Yonat; Pesik, Nicki; Cetron, Martin S.; Gambhir, Manoj; Gerber, Susan I.; Swerdlow, David L. 2016 2016-10-23 None N PMC5038414 27648640.0 10.3201/eid2210.151121 axvkhula 0.380325 Lim_T_2012, Wang_2014, Georgiev_2009
28 Sung_2019 Phylogeographic investigation of 2014 porcine epidemic diarrhea virus (PEDV) transmission in Taiwan Sung, Ming-Hua; Lin, Chao-Nan; Chiou, Ming-Tang; Cheng, I-Ju; Thanh, Quang-Hien; Chao, Day-Yu; Lan, Yu-Ching 2019 2019-03-06 COMM-USE N PMC6402684 30840679.0 10.1371/journal.pone.0213153 t6cnjwpd 0.376329
29 Galvani_2003 Severe Acute Respiratory Syndrome: Temporal Stability and Geographic Variation in Death Rates and Doubling Times Galvani, Alison P.; Lei, Xiudong; Jewell, Nicholas P. 2003 2003-08-23 PMC N PMC3020622 12967499.0 10.3201/eid0908.030334 dy6ejuq5 0.360477 Chowell_2007
30 Carnes_2011 Temporal Variations in the Distribution of West Nile Virus Within the United States; 2000–2008 Carnes, Alexander; Ogneva-Himmelberger, Yelena 2011 2011-05-25 PMC N PMC7090722 10.1007/s12061-011-9067-7 1oaist04 0.359845 Lim_T_2012, Wang_2014 Al-Abri_2017
31 Beaudeau_2010 Spatial patterns of Bovine Corona Virus and Bovine Respiratory Syncytial Virus in the Swedish beef cattle population Beaudeau, Francois; Björkman, Camilla; Alenius, Stefan; Frössling, Jenny 2010 2010-05-21 COMM-USE N PMC2898781 20492637.0 10.1186/1751-0147-52-33 c1uefp15 0.349187 Lim_T_2012
32 Routledge_2019 Tracking progress towards malaria elimination in China: estimates of reproduction numbers and their spatiotemporal variation Isobel Routledge; Shengjie Lai; Katherine E Battle; Azra C Ghani; Manuel Gomez-Rodriguez; Kyle B Gustafson; Swapnil Mishra; Joshua L Proctor; Andrew J Tatem; Zhongjie Li; Samir Bhatt 2019 2019-05-10 BioRxiv N 10.1101/628842 g0dskjv5 0.347749 Pai_M_2006 Routledge_2018
33 Reyes_2012 Urbanization and Infectious Diseases: General Principles, Historical Perspectives, and Contemporary Challenges Reyes, Raquel; Ahn, Roy; Thurber, Katherine; Burke, Thomas F. 2012 2012-05-19 PMC N PMC7119955 10.1007/978-1-4614-4496-1_4 zyfclun3 0.338223 Lim_T_2012, Pirie_2006, Wang_2014
34 Feng_2009 The SARS epidemic in mainland China: bringing together all epidemiological data Feng, Dan; De Vlas, Sake J.; Fang, Li‐Qun; Han, Xiao‐Na; Zhao, Wen‐Juan; Sheng, Shen; Yang, Hong; Jia, Zhong‐Wei; Richardus, Jan Hendrik; Cao, Wu‐Chun 2009 2009-06-05 PMC N PMC7169858 19508441.0 10.1111/j.1365-3156.2008.02145.x 12qujq0l 0.337808 Lim_T_2012
35 Brady_2012 Canine parvovirus in Australia: The role of socio-economic factors in disease clusters Brady, S.; Norris, J.M.; Kelman, M.; Ward, M.P. 2012 2012-08-31 PMC N PMC7110463 22398131.0 10.1016/j.tvjl.2012.01.025 qkps78an 0.333075
36 Alghamdi_2014 The pattern of Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive epidemiological analysis of data from the Saudi Ministry of Health Alghamdi, Ibrahim G; Hussain, Issam I; Almalki, Shaia S; Alghamdi, Mohamed S; Alghamdi, Mansour M; El-Sheemy, Mohammed A 2014 2014-08-20 NONCOMM N PMC4149400 25187734.0 10.2147/ijgm.s67061 3y277ihw 0.326544 Lim_T_2012, Pearson_2020, Win_K_2011, Georgiev_2009
37 Kulu_2020 The Contribution of Age Structure to the Number of Deaths from Covid-19 in the UK by Geographical Units Hill Kulu; Peter Dorey 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.16.20067991 vpakh3jk 0.317449 Lim_T_2012
38 Chhetri_2013 Comparison of the geographical distribution of feline immunodeficiency virus and feline leukemia virus infections in the United States of America (2000–2011) Chhetri, Bimal K; Berke, Olaf; Pearl, David L; Bienzle, Dorothee 2013 2013-01-05 COMM-USE N PMC3544736 23289366.0 10.1186/1746-6148-9-2 u9kv4113 0.316129 Wang_2014
39 Wang_2014 Spatial Analysis on Hepatitis C Virus Infection in Mainland China: From 2005 to 2011 Wang, Lu; Xing, Jiannan; Chen, Fangfang; Yan, Ruixue; Ge, Lin; Qin, Qianqian; Wang, Liyan; Ding, Zhengwei; Guo, Wei; Wang, Ning 2014 2014-10-30 COMM-USE N PMC4214689 25356554.0 10.1371/journal.pone.0110861 2osngjkv 0.307979 Lim_T_2012, Wang_2014 Wang_2019, Mao_Y_2019
40 Ward_2011 Companion animal disease surveillance: A new solution to an old problem? Ward, M.P.; Kelman, M. 2011 2011-09-30 PMC N PMC7102770 22748174.0 10.1016/j.sste.2011.07.009 apb8l8tq 0.303728 Lim_T_2012