Topic 11 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 09 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 McGoldrick_2014 Characterisation of a recent virulent transmissible gastroenteritis virus from Britain with a deleted ORF 3a McGoldrick, A.; Lowings, J. P.; Paton, D. J. 2014 2014-05-18 PMC N PMC7087079 10365166.0 10.1007/s007050050541 y1d9hhzb 0.695874 Ren_X_2008
2 Hays_1998 PCR sequencing of the spike genes of geographically and chronologically distinct human coronaviruses 229E Hays, J.P.; Myint, S.H. 1998 1998-11-15 PMC N PMC7119576 9870593.0 10.1016/s0166-0934(98)00116-5 a3groawt 0.675639 Kamau_2019, Chieochansin_2010 Ren_X_2008, Kim_S_2003
3 Liais_2014 Novel Avian Coronavirus and Fulminating Disease in Guinea Fowl, France Liais, Etienne; Croville, Guillaume; Mariette, Jérôme; Delverdier, Maxence; Lucas, Marie-Noëlle; Klopp, Christophe; Lluch, Jérôme; Donnadieu, Cécile; Guy, James S.; Corrand, Léni; Ducatez, Mariette F.; Guérin, Jean-Luc 2014 2014-01-23 PMC N PMC3884723 24377831.0 10.3201/eid2001.130774 e3wjo0yk 0.557785 Cavanagh_1992 Brandão_2016
4 Gomaa_2008 Complete genomic sequence of turkey coronavirus Gomaa, M.H.; Barta, J.R.; Ojkic, D.; Yoo, D. 2008 2008-08-31 PMC N PMC7114504 18468711.0 10.1016/j.virusres.2008.03.020 sl5zy8nj 0.556105 Kocherhans_2001
5 Weiss_1983 Coronaviruses SD and SK share extensive nucleotide homology with murine coronavirus MHV-A59, more than that shared between human and murine coronaviruses Weiss, Susan R. 1983 1983-04-30 PMC N PMC7130655 6687965.0 10.1016/s0042-6822(83)80022-1 c2auspti 0.542279 Armesto_2007, Keep_2014 Ren_X_2008
6 Motokawa_2013 Comparison of the Amino Acid Sequence and Phylogenetic Analysis of the Peplomer, Integral Membrane and Nucleocapsid Proteins of Feline, Canine and Porcine Coronaviruses Motokawa, Kenji; Hohdatsu, Tsutomu; Hashimoto, Hiroshi; Koyama, Hiroyuki 2013 2013-11-14 PMC N PMC7168433 8839428.0 10.1111/j.1348-0421.1996.tb01089.x sok56yga 0.536154 Kamau_2019, Motokawa_1995
7 Brown_2016 First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses Brown, P. A.; Touzain, F.; Briand, F. X.; Gouilh, A. M.; Courtillon, C.; Allée, C.; Lemaitre, E.; De Boisséson, C.; Blanchard, Y.; Eterradossi, N. 2016 2016-01-01 COMM-USE N PMC7081074 26585962.0 10.1099/jgv.0.000338 uo1zzzrc 0.523508 Chieochansin_2010, Kamau_2019, Liu_S_2013 Gomaa_2008
8 Meng_1995 Phylogenetic analyses of the putative M (ORF 6) and N (ORF 7) genes of porcine reproductive and respiratory syndrome virus (PRRSV): implication for the existence of two genotypes of PRRSV in the U.S.A. and Europe Meng, X. -J.; Paul, P. S.; Halbur, P. G.; Lum, M. A. 1995 1995-01-01 PMC N PMC7086766 7794115.0 10.1007/bf01309962 uutppde3 0.522360 Kamau_2019, Chieochansin_2010 Ren_X_2008
9 Cao_J_2008 Complete nucleotide sequence of polyprotein gene 1 and genome organization of turkey coronavirus Cao, Jianzhong; Wu, Ching-Ching; Lin, Tsang Long 2008 2008-09-30 PMC N PMC7114415 18514348.0 10.1016/j.virusres.2008.04.015 momzoghp 0.516644 Kocherhans_2001, Tohya_1991, Chieochansin_2010 Lin_T_2004
10 Zhang_2007 Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus Zhang, Xinsheng; Hasoksuz, Mustafa; Spiro, David; Halpin, Rebecca; Wang, Shiliang; Stollar, Sarah; Janies, Daniel; Hadya, Nagesh; Tang, Yuxin; Ghedin, Elodie; Saif, Linda 2007 2007-02-20 None N PMC1850758 17023013.0 10.1016/j.virol.2006.08.051 ijv7bcdx 0.512516 Kim_S_2003, Wang_2010
11 Vennema_1998 Feline Infectious Peritonitis Viruses Arise by Mutation from Endemic Feline Enteric Coronaviruses Vennema, Harry; Poland, Amy; Foley, Janet; Pedersen, Niels C. 1998 1998-03-30 PMC N PMC7131759 9527924.0 10.1006/viro.1998.9045 dkzqfs7m 0.503001 Chieochansin_2010, Liu_S_2013, Kamau_2019, Hewson_2010, Callison_1999
12 Wise_2006 Molecular characterization of a novel coronavirus associated with epizootic catarrhal enteritis (ECE) in ferrets Wise, Annabel G.; Kiupel, Matti; Maes, Roger K. 2006 2006-05-25 PMC Y PMC7111814 16499943.0 10.1016/j.virol.2006.01.031 utn21ce1 0.498865 Kamau_2019 Ren_X_2008, Di_Martino_2009
13 Hedges_1996 Genetic variation in open reading frame 2 of field isolates and laboratory strains of equine arteritis virus Hedges, Jodi F.; Balasuriya, Udeni B.R.; Timoney, Peter J.; McCollum, William H.; MacLachlan, N.James 1996 1996-06-30 PMC N PMC7133956 8806173.0 10.1016/0168-1702(96)01294-4 6r7d5n3l 0.498594 Ren_X_2008
14 Wise_2010 Comparative sequence analysis of the distal one-third of the genomes of a systemic and an enteric ferret coronavirus Wise, Annabel G.; Kiupel, Matti; Garner, Michael M.; Clark, April K.; Maes, Roger K. 2010 2010-04-30 PMC N PMC7114374 20079778.0 10.1016/j.virusres.2009.12.011 mzf7j8xd 0.492486 Chieochansin_2010, Tohya_1991, Callison_1999 Ren_X_2008, Ballesteros_1997
15 Décimo_1993 The gene encoding the nucleocapsid protein: sequence analysis in murine hepatitis virus type 3 and evolution inCoronaviridae Décimo, D.; Philippe, H.; Hadchouel, Michelle; Tardieu, M.; Meunier-Rotival, M. 1993 1993-01-01 PMC N PMC7086934 8390823.0 10.1007/bf01309660 maye1lat 0.489736 Armesto_2007 Ren_X_2008
16 Motokawa_1995 Molecular cloning and sequence determination of the peplomer protein gene of feline infectious peritonitis virus type I Motokawa, K.; Hohdatsu, T.; Aizawa, C.; Koyama, H.; Hashimoto, H. 1995 1995-01-01 PMC N PMC7086962 7733820.0 10.1007/bf01718424 n75ldyy2 0.488963 Ren_X_2008
17 Wesley_1999 The S gene of canine coronavirus, strain UCD-1, is more closely related to the S gene of transmissible gastroenteritis virus than to that of feline infectious peritonitis virus 1 Disclaimer: No endorsements are herein implied. Brand names are necessary to report factually on available data; however, the USDA neither guarantees nor warrants the standards of the products, and the use of the names by the USDA implies no approval of the products to the exclusion of others that may also be suitable. 1 Wesley, Ronald D 1999 1999-06-30 PMC N PMC7126756 10475084.0 10.1016/s0168-1702(99)00032-5 4p7a69kz 0.478682 Armesto_2007, Chieochansin_2010, Kamau_2019 Ren_X_2008
18 Liu_S_2008 Identification of the avian infectious bronchitis coronaviruses with mutations in gene 3 Liu, Shengwang; Zhang, Qingxia; Chen, Jianfei; Han, Zongxi; Shao, Yuhao; Kong, Xiangang; Tong, Guangzhi 2008 2008-04-15 PMC N PMC7158841 18295413.0 10.1016/j.gene.2008.01.004 gmq5zs2d 0.474247 Ren_X_2008, Lachheb_2019
19 Horsburgh_1995 Cloning, sequencing and expression of the S protein gene from two geographically distinct strains of canine coronavirus Horsburgh, Brian C.; Brown, T.David K. 1995 1995-11-30 PMC N PMC7133993 8607285.0 10.1016/s0168-1702(95)00068-2 nzi3w50e 0.473185 Chieochansin_2010, Tohya_1991, Armesto_2007, Kocherhans_2001 Ren_X_2008
20 Li_J_2010 Complete genomic sequence of transmissible gastroenteritis virus TS and 3′ end sequence characterization following cell culture Li, Jian-qiang; Cheng, Jie; Lan, Xi; Li, Xue-rui; Li, Wei; Yin, Xiang-ping; Li, Bao-yu; Yang, Bin; Li, Zhi-yong; Zhang, Yun; Liu, Ji-xing 2010 2010-06-06 PMC N PMC7090398 20960296.0 10.1007/s12250-010-3108-2 j9338csa 0.466114 Kamau_2019, Chieochansin_2010, Armesto_2007, Keep_2015 Ren_X_2008, Kim_S_2003, Weiwei_2014
21 Liu_D_1992 Identification of two new polypeptides encoded by mRNA5 of the coronavirus infectious bronchitis virus Liu, D.X.; Inglis, S.C. 1992 1992-01-31 PMC N PMC7130825 1309280.0 10.1016/0042-6822(92)90094-6 3tpyj04y 0.461937
22 Lamers_2016 Naturally occurring recombination in ferret coronaviruses revealed by complete genome characterization Lamers, Mart M.; Smits, Saskia L.; Hundie, Gadissa B.; Provacia, Lisette B.; Koopmans, Marion; Osterhaus, Albert D. M. E.; Haagmans, Bart L.; Raj, V. Stalin 2016 2016-09-01 COMM-USE N PMC7079585 27283016.0 10.1099/jgv.0.000520 9at44dtj 0.457912 Chieochansin_2010, Wang_2007 Minami_2016, Di_Martino_2009
23 Mardassi_1995 Molecular analysis of the ORFs 3 to 7 of porcine reproductive and respiratory syndrome virus, Québec reference strain Mardassi, H.; Mounir, S.; Dea, S. 1995 1995-01-01 PMC N PMC7087035 7661693.0 10.1007/bf01322667 hds1j5ln 0.444456 Chieochansin_2010, Callison_1999, Lee_C_2001 Ren_X_2008
24 Li_T_2017 Determination of Ferret Enteric Coronavirus Genome in Laboratory Ferrets Li, Tian-Cheng; Yoshizaki, Sayaka; Kataoka, Michiyo; Doan, Yen Hai; Ami, Yasushi; Suzaki, Yuriko; Nakamura, Tomofumi; Takeda, Naokazu; Wakita, Takaji 2017 2017-09-23 PMC N PMC5572892 28820366.0 10.3201/eid2309.160215 jrmkvif6 0.441430 Chieochansin_2010, Kamau_2019 Brandão_2016
25 Ducatez_2015 Full genome sequence of guinea fowl coronavirus associated with fulminating disease Ducatez, Mariette F.; Liais, Etienne; Croville, Guillaume; Guérin, Jean-Luc 2015 2015-02-25 PMC N PMC7088915 25712772.0 10.1007/s11262-015-1183-z yqysedne 0.439378 Ren_X_2008
26 Kennedy_2001 Deletions in the 7a ORF of feline coronavirus associated with an epidemic of feline infectious peritonitis Kennedy, Melissa; Boedeker, Nancy; Gibbs, Pam; Kania, Stephen 2001 2001-08-08 PMC N PMC7117145 11390106.0 10.1016/s0378-1135(01)00354-6 agm4zbcx 0.426012 Chieochansin_2010, Cheun-Arom_2015, Armesto_2007
27 Lin_T_2002 Characterization of turkey coronavirus from turkey poults with acute enteritis Lin, Tsang L.; Loa, Chien C.; Tsai, Shih C.; Wu, Ching C.; Bryan, Tom A.; Leon Thacker, H.; Hooper, Tom; Schrader, Donna 2002 2002-01-03 PMC N PMC7117285 11731170.0 10.1016/s0378-1135(01)00447-3 iwv9lilo 0.412680 Armesto_2007, Kamau_2019 Ren_X_2008
28 Tohya_1991 Sequence analysis of the 3′-end of feline calicivirus genome Tohya, Yukinobu; Taniguchi, Yasuko; Takahashi, Eiji; Utagawa, Etsuko; Takeda, Naokazu; Miyamura, Kikuko; Yamazaki, Shudo; Mikami, Takeshi 1991 1991-08-31 PMC N 1853578.0 10.1016/0042-6822(91)91016-a l761o6n3 0.412666
29 Sanchez-Morgado_2004 Molecular characterization of a virulent canine coronavirus BGF strain Sanchez-Morgado, Jose M; Poynter, Scott; Morris, Timothy H 2004 2004-08-31 PMC N PMC7114380 15177889.0 10.1016/j.virusres.2004.02.038 t1iuhx3a 0.405164 Kamau_2019 Di_Martino_2009, Ren_X_2008, Lachheb_2019
30 Homberger_1995 Sequence analysis of the nucleoprotein genes of three enterotropic strains of murine coronavirus Homberger, F. R. 1995 1995-01-01 PMC N PMC7087234 7733827.0 10.1007/bf01718432 t9zs87wa 0.392985 Tohya_1991 Ren_X_2008
31 Stephensen_1999 Phylogenetic analysis of a highly conserved region of the polymerase gene from 11 coronaviruses and development of a consensus polymerase chain reaction assay Stephensen, Charles B.; Casebolt, Donald B.; Gangopadhyay, Nupur N. 1999 1999-04-30 PMC N PMC7126282 10392726.0 10.1016/s0168-1702(99)00017-9 fz9wvup0 0.387151 Chieochansin_2010, Kamau_2019, Armesto_2007, Keep_2014 Lin_T_2004, Yin_J_2005
32 Hewson_2010 Infectious bronchitis viruses with naturally occurring genomic rearrangement and gene deletion Hewson, Kylie A.; Ignjatovic, Jagoda; Browning, Glenn F.; Devlin, Joanne M.; Noormohammadi, Amir H. 2010 2010-11-04 PMC N PMC7086917 21049275.0 10.1007/s00705-010-0850-6 6vwzwplw 0.369608 Chieochansin_2010, Callison_1999, Kamau_2019 Ren_X_2008, Lachheb_2019
33 Wang_2010 Molecular characterization of a Chinese vaccine strain of transmissible gastroenteritis virus: mutations that may contribute to attenuation Wang, Chengbao; Chen, Jianfei; Shi, Hongyan; Qiu, Huaji; Xue, Fei; Liu, Changming; Zhu, Yuanmao; Liu, Shengwang; Almazán, Fernando; Enjuanes, Luis; Feng, Li 2010 2010-03-13 PMC N PMC7088588 20229183.0 10.1007/s11262-010-0467-6 62xdl82e 0.357581 Armesto_2007, Chieochansin_2010, Keep_2015 Ren_X_2008, Hu_X_2015, Lachheb_2019, Kim_S_2003
34 Zhang_2017 ORF3a deletion in field strains of porcine‐transmissible gastroenteritis virus in China: A hint of association with porcine respiratory coronavirus Zhang, X.; Zhu, Y.; Zhu, X.; Chen, J.; Shi, H.; Shi, D.; Dong, H.; Feng, L. 2017 2017-03-15 PMC N PMC7169721 28299912.0 10.1111/tbed.12634 m1bafpy3 0.355671 Kamau_2019, Chieochansin_2010, Cheun-Arom_2015
35 Yuan_2001 Erratum to “Complete genome comparison of porcine reproductive and respiratory syndrome virus parental and attenuated strains” Yuan, Shishan; Mickelson, Daniel; Murtaugh, Michael P.; Faaberg, Kay S. 2001 2001-11-05 PMC N PMC7125757 11551659.0 10.1016/s0168-1702(01)00295-7 y9wjp0aj 0.352674 Armesto_2007 Ren_X_2008
36 Ma_G_2008 Molecular characterization of the 9.36 kb C-terminal region of canine coronavirus 1-71 strain Ma, Guanggang; Wang, Yuyan; Lu, Chengping 2008 2008-06-01 PMC N PMC7089161 18306032.0 10.1007/s11262-008-0214-4 0uk42zvq 0.349064
37 Williams_1992 Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses Williams, Anna K.; Li, Wang; Sneed, Loyd W.; Collisson, Ellen W. 1992 1992-09-15 PMC N PMC7134110 1332275.0 10.1016/0168-1702(92)90135-v 1vf0gzhw 0.346186 Callison_1999, Chieochansin_2010 Ren_X_2008, Lachheb_2019, Liu_S_2008
38 Chen_2015 Virus Neutralization Assay for Turkey Coronavirus Infection Chen, Yi-Ning; Wu, Ching Ching; Lin, Tsang Long 2015 2015-09-10 PMC N PMC7120153 10.1007/978-1-4939-3414-0_3 iawcsntb 0.340588
39 Wege_1980 NEUROVIRULENCE AND PERSISTENCY OF MOUSE HEPATITIS VIRUSES IN RATS 1 1 Supported by the Deutsche Forschungsgemeinschaft and Hertie-Stiftung Wege, H.; Koga, M.; Stephenson, J.R.; Siddell, S.; ter Meulen, V. 1980 1980-12-31 PMC N PMC7155488 10.1016/b978-0-12-255850-4.50067-6 vas0b6dt 0.339288
40 Zhang_2017 Identification of a natural recombinant transmissible gastroenteritis virus between Purdue and Miller clusters in China Zhang, Xin; Zhu, Yunnuan; Zhu, Xiangdong; Shi, Hongyan; Chen, Jianfei; Shi, Da; Yuan, Jing; Cao, Liyan; Liu, Jianbo; Dong, Hui; Jing, Zhaoyang; Zhang, Jialin; Wang, Xiaobo; Feng, Li 2017 2017-08-23 COMM-USE N PMC5583670 28831195.0 10.1038/emi.2017.62 gxh58bxf 0.332616 Kamau_2019, Cheun-Arom_2015 Ren_X_2008, Hu_X_2015, Wang_2010
41 Farsani_2012 The first complete genome sequences of clinical isolates of human coronavirus 229E Farsani, Seyed Mohammad Jazaeri; Dijkman, Ronald; Jebbink, Maarten F.; Goossens, Herman; Ieven, Margareta; Deijs, Martin; Molenkamp, Richard; van der Hoek, Lia 2012 2012-08-25 PMC N PMC7088690 22926811.0 10.1007/s11262-012-0807-9 7lqjxxw6 0.328779 Callison_1999 Ren_X_2008, Liu_S_2008
42 Dijkman_2006 Human coronavirus 229E encodes a single ORF4 protein between the spike and the envelope genes Dijkman, Ronald; Jebbink, Maarten F; Wilbrink, Berry; Pyrc, Krzysztof; Zaaijer, Hans L; Minor, Philip D; Franklin, Sally; Berkhout, Ben; Thiel, Volker; van der Hoek, Lia 2006 2006-12-28 COMM-USE N PMC1774570 17194306.0 10.1186/1743-422x-3-106 t0dg7y73 0.326868 Chieochansin_2010, Kamau_2019
43 Hu_X_2015 Molecular characterization and phylogenetic analysis of transmissible gastroenteritis virus HX strain isolated from China Hu, Xiaoliang; Li, Nannan; Tian, Zhige; Yin, Xin; Qu, Liandong; Qu, Juanjuan 2015 2015-03-21 COMM-USE N PMC4379598 25890036.0 10.1186/s12917-015-0387-8 4ic2in3i 0.318022 Chieochansin_2010, Cheun-Arom_2015 Ren_X_2008, Man_C_2012, Weiwei_2014
44 Chen_2015 PCR Amplification and Sequencing Analysis of Full-Length Turkey Coronavirus Spike Gene Chen, Yi-Ning; Akin, Aydemir; Loa, Chien Chang; Ababneh, Mustafa; Cao, Jianzhong; Chen, Wan-Jung; Wu, Ching Ching; Lin, Tsang Long 2015 2015-09-10 PMC N PMC7122697 10.1007/978-1-4939-3414-0_14 w19kd6yp 0.317223 Kamau_2019, Armesto_2007 Ren_X_2008, Jeong_2005, Di_Martino_2009
45 Reddy_2015 Genetic Characterization of the Belgian Nephropathogenic Infectious Bronchitis Virus (NIBV) Reference Strain B1648 Reddy, Vishwanatha R.A.P.; Theuns, Sebastiaan; Roukaerts, Inge D.M.; Zeller, Mark; Matthijnssens, Jelle; Nauwynck, Hans J. 2015 2015-08-07 COMM-USE N PMC4576188 26262637.0 10.3390/v7082827 5gzo0rng 0.316595 Callison_1999, Chieochansin_2010, Hewson_2010, Vlasova_2014, Paraguison-Alili_2016 Ren_X_2008, Lachheb_2019, Nicholson_2016, Li_S_2019
46 Weiwei_2014 Complete genomic sequence of the coronavirus transmissible gastroenteritis virus SHXB isolated in China Weiwei, Hu; Qinghua, Yu; Liqi, Zhu; Haofei, Liu; Shanshan, Zhao; Qi, Gao; Kongwang, He; Qian, Yang 2014 2014-04-17 PMC N PMC7087249 24740387.0 10.1007/s00705-014-2080-9 agn6w3lk 0.316561 Chieochansin_2010, Kocherhans_2001 Ren_X_2008, Kim_S_2003, Hu_X_2015
47 Gomaa_2009 Use of recombinant S1 spike polypeptide to develop a TCoV-specific antibody ELISA Gomaa, Maged H.; Yoo, Dongwan; Ojkic, Davor; Barta, John R. 2009 2009-09-18 PMC N PMC7117320 19414227.0 10.1016/j.vetmic.2009.04.010 zcuz9uzw 0.314239 Chen_2015
48 Shen_2003 Emergence of a coronavirus infectious bronchitis virus mutant with a truncated 3b gene: functional characterization of the 3b protein in pathogenesis and replication Shen, S; Wen, Z.L; Liu, D.X 2003 2003-06-20 PMC N PMC7125764 12832199.0 10.1016/s0042-6822(03)00117-x aogqumuf 0.300632 Ren_X_2008