Topic 02 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 03 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141564 10954870.0 10.1016/s1357-4310(00)01775-5 504kr50e 0.824858 Alcami_2000 Alcami_2000
2 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141568 10989308.0 10.1016/s0966-842x(00)01830-8 tfok8ep7 0.784777 Alcami_2000 Alcami_2000
3 Emonet_2011 Arenavirus reverse genetics: New approaches for the investigation of arenavirus biology and development of antiviral strategies Emonet, Sebastien E.; Urata, Shuzo; de la Torre, Juan C. 2011 2011-03-15 PMC N PMC3057228 21324503.0 10.1016/j.virol.2011.01.013 lt8j5wjs 0.770375 Emonet_2009
4 Alves-Rodrigues_2006 Saccharomyces cerevisiae: A useful model host to study fundamental biology of viral replication Alves-Rodrigues, Isabel; Galão, Rui Pedro; Meyerhans, Andreas; Díez, Juana 2006 2006-09-30 PMC N PMC7114155 16698107.0 10.1016/j.virusres.2005.11.018 14z8g7pk 0.766276 Conzelmann_1996 Hughes_2012
5 Ferris_2016 Chapter 13 Host Genetics It Is Not Just the Virus, Stupid Ferris, Martin T.; Heise, Mark T.; Baric, Ralph S. 2016 2016-12-31 PMC N PMC7150335 10.1016/b978-0-12-800964-2.00013-6 947ew4xj 0.743307 Castrignano_2015, Johnson_2018, Li_L_2014 Douam_2015
6 Korth_2013 Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses Korth, Marcus J.; Tchitchek, Nicolas; Benecke, Arndt G.; Katze, Michael G. 2013 2013-10-31 None N PMC3596458 23218769.0 10.1016/j.smim.2012.11.001 zmzy4el3 0.736091 Walker_2010, Johnson_2018 Schäfer_2014
7 Durmuş_Tekir_2012 Systems biology of pathogen‐host interaction: Networks of protein‐protein interaction within pathogens and pathogen‐human interactions in the post‐genomic era Durmuş Tekir, Saliha D.; Ülgen, Kutlu Ö. 2012 2012-11-29 PMC N PMC7161785 23193100.0 10.1002/biot.201200110 lbjesv8y 0.701572 UNKNOWN_2004, Li_L_2014, Castrignano_2015, Ferris_2016
8 Emonet_2009 Arenavirus genetic diversity and its biological implications Emonet, Sebastien F.; de la Torre, Juan C.; Domingo, Esteban; Sevilla, Noemí 2009 2009-07-31 PMC N PMC7106275 19460307.0 10.1016/j.meegid.2009.03.005 6n4yxmb1 0.699459
9 Biron_2017 11 Proteomics and Host–Pathogen Interactions A Bright Future? Biron, D.G.; Nedelkov, D.; Missé, D.; Holzmuller, P. 2017 2017-12-31 PMC N PMC7149668 10.1016/b978-0-12-799942-5.00011-1 uo98qzm2 0.673508 UNKNOWN_2004, Johnson_2018, Castrignano_2015 Biron_2011, Sironi_2015
10 Ghabrial_1994 New Developments in Fungal Virology Ghabrial, Said A. 1994 1994-12-31 PMC N 8191957.0 10.1016/s0065-3527(08)60052-4 beptjlz3 0.664016
11 Djikeng_2009 Advancing full length genome sequencing for human RNA viral pathogens Djikeng, Appolinaire; Spiro, David 2009 2009-01-01 PMC N PMC2638583 19884976.0 10.2217/17460794.4.1.47 uvm72cpi 0.660094 Smith_2013, Conzelmann_1996, Dugan_2012 Dugan_2012
12 Walker_2010 The 2009 H1N1 Pandemic Adds to Our Knowledge of Influenza Pathogenesis Walker, David H. 2010 2010-07-31 None N PMC2893645 20489147.0 10.2353/ajpath.2010.100351 v4cf95qh 0.656906
13 Dugan_2012 Large-scale sequencing and the natural history of model human RNA viruses Dugan, Vivien G; Saira, Kazima; Ghedin, Elodie 2012 2012-06-01 PMC N PMC3653332 23682295.0 10.2217/fvl.12.45 s6hld5xv 0.642145 Djikeng_2009, Conzelmann_1996
14 Schoggins_2014 Interferon-stimulated genes: roles in viral pathogenesis Schoggins, John W 2014 2014-06-30 None N PMC4077717 24713352.0 10.1016/j.coviro.2014.03.006 odrigwlz 0.638926
15 Gomme_2011 Chapter 9 Rabies Virus as a Research Tool and Viral Vaccine Vector Gomme, Emily A.; Wanjalla, Celestine N.; Wirblich, Christoph; Schnell, Matthias J. 2011 2011-12-31 PMC N PMC7150175 21601047.0 10.1016/b978-0-12-387040-7.00009-3 hrotztfm 0.624587 Conzelmann_1996, Bradbury_2003 Nadin‐Davis_2008
16 Liu_Y_2017 10 Infectious Disease Genomics Liu, Y.-T. 2017 2017-12-31 PMC N PMC7149986 10.1016/b978-0-12-799942-5.00010-x 1pjolkql 0.620917 Smith_2013, Guery_2014, Johnson_2018 Liu_Y_2011
17 Shannon_2010 Chapter 57 Genomic Approaches to the Host Response to Pathogens Shannon, M. Frances 2010 2010-12-31 PMC N PMC7149829 10.1016/b978-0-12-374934-5.00057-x dbe5o8gl 0.617776 Li_L_2014, Ferris_2016, Castrignano_2015 Wilson_2005
18 Schoborg_2011 Chlamydia persistence – a tool to dissect chlamydia–host interactions Schoborg, R.V. 2011 2011-07-31 None N PMC3636554 21458583.0 10.1016/j.micinf.2011.03.004 gkf1fypd 0.617277 UNKNOWN_2004, Castrignano_2015
19 Klein_2009 Understanding the molecular epidemiology of foot-and-mouth-disease virus Klein, Joern 2009 2009-03-31 PMC N 19100342.0 10.1016/j.meegid.2008.11.005 tl2seigh 0.614190 Walker_2010
20 Schneider_2014 Interferon-Stimulated Genes: A Complex Web of Host Defenses Schneider, William M.; Chevillotte, Meike Dittmann; Rice, Charles M. 2014 2014-03-21 PMC N PMC4313732 24555472.0 10.1146/annurev-immunol-032713-120231 77dt4hfe 0.594644
21 Rouse_2019 25 Host Defenses to Viruses Rouse, Barry T.; Mueller, Scott N. 2019 2019-12-31 PMC N PMC7149641 10.1016/b978-0-7020-6896-6.00025-9 z08rn959 0.589339 UNKNOWN_2004
22 Tan_S_2007 Systems biology and the host response to viral infection Tan, Seng-Lai; Ganji, Gopinath; Paeper, Bryan; Proll, Sean; Katze, Michael G 2007 2007-01-01 PMC N PMC7097743 18066032.0 10.1038/nbt1207-1383 1ucnqqgl 0.587067 UNKNOWN_2004
23 Bier_2011 Deconstructing host-pathogen interactions in Drosophila Bier, Ethan; Guichard, Annabel 2011 2011-10-06 PMC N PMC3255543 21979942.0 10.1242/dmm.000406 0hobwqpe 0.585612 UNKNOWN_2004, Johnson_2018 Douam_2015, Sironi_2015
24 Majzoub_2019 The Innate Antiviral Response in Animals: An Evolutionary Perspective from Flagellates to Humans Majzoub, Karim; Wrensch, Florian; Baumert, Thomas F. 2019 2019-08-16 COMM-USE N PMC6723221 31426357.0 10.3390/v11080758 8p7scli8 0.582308
25 Cottam_2009 Full Sequencing of Viral Genomes: Practical Strategies Used for the Amplification and Characterization of Foot-and-Mouth Disease Virus Cottam, Eleanor M.; Wadsworth, Jemma; Knowles, Nick J.; King, Donald P. 2009 2009-03-16 PMC N PMC7122775 19521878.0 10.1007/978-1-60327-999-4_17 a5myh752 0.582184 Djikeng_2009, Conzelmann_1996
26 Smith_2013 Sherlock Genomes — viral investigator Smith, Sarah E.; Wash, Rachael S. 2013 2013-02-15 PMC N PMC7097817 23411861.0 10.1038/nrmicro2979 dkfrk71a 0.581829 Vernikos_2008, Djikeng_2009, UNKNOWN_2004 Vernikos_2008
27 Arinaminpathy_2014 Viral Dynamics and Mathematical Models Arinaminpathy, Nimalan; Metcalf, Charlotte Jessica E.; Grenfell, Bryan T. 2014 2014-02-27 PMC N PMC7119994 10.1007/978-1-4899-7448-8_5 nhw3tome 0.579970
28 Baric_2016 Next-Generation High-Throughput Functional Annotation of Microbial Genomes Baric, Ralph S.; Crosson, Sean; Damania, Blossom; Miller, Samuel I.; Rubin, Eric J. 2016 2016-10-04 COMM-USE N PMC5050336 27703071.0 10.1128/mbio.01245-16 o6sy4zi4 0.577960 UNKNOWN_2004, Alcami_2000, Alcami_2000
29 Vernikos_2008 Overtake in reverse gear Vernikos, Georgios S. 2008 2008-01-01 PMC N PMC7097615 19663048.0 10.1038/nrmicro1898 rzx9hy0o 0.576114 Smith_2013, UNKNOWN_2020
30 Sironi_2015 Evolutionary insights into host–pathogen interactions from mammalian sequence data Sironi, Manuela; Cagliani, Rachele; Forni, Diego; Clerici, Mario 2015 2015-03-18 PMC N PMC7096838 25783448.0 10.1038/nrg3905 46w52de3 0.567258 UNKNOWN_2004, Johnson_2018, Kozakiewicz_2018, Munjal_2018 Douam_2015
31 WILUSZ_2005 CHAPTER 3 The Fundamentals of Human Virology WILUSZ, JEFFREY 2005 2005-12-31 PMC N 10.1016/b978-012088483-4/50006-8 3mfighm4 0.562295 Li_L_2014, Johnson_2018, UNKNOWN_2004, Conzelmann_1996
32 Maurizio_2016 The Collaborative Cross Resource for Systems Genetics Research of Infectious Diseases Maurizio, Paul L.; Ferris, Martin T. 2016 2016-10-17 PMC N PMC7120135 27933545.0 10.1007/978-1-4939-6427-7_28 e4xmqml9 0.557956 Castrignano_2015, Ferris_2016, Li_L_2014, Douam_2015 Ferris_2014
33 FENNER_1987 CHAPTER 4 Viral Replication FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50008-6 3q9yr6np 0.553416
34 Dennehy_2009 Bacteriophages as model organisms for virus emergence research Dennehy, John J. 2009 2009-10-31 PMC N PMC7127698 19765997.0 10.1016/j.tim.2009.07.006 v8r3fxae 0.553220 UNKNOWN_2004
35 Pokhriyal_2019 Bioinformatics and Microarray-Based Technologies to Viral Genome Sequence Analysis Pokhriyal, Mayank; Ratta, Barkha; Yadav, Brijesh S. 2019 2019-11-06 PMC N PMC7121691 10.1007/978-981-13-8739-5_6 ag3n4ecn 0.543902 Djikeng_2009, Yadav_2013, UNKNOWN_2004
36 Robinson_2013 Genomics and outbreak investigation: from sequence to consequence Robinson, Esther R; Walker, Timothy M; Pallen, Mark J 2013 2013-04-29 PMC N PMC3706975 23673226.0 10.1186/gm440 vuupgg7i 0.543701 Djikeng_2009, Johnson_2018, Li_L_2014
37 Ferris_2014 Chapter Four Quantitative Genetics in the Study of Virus-Induced Disease Ferris, Martin T.; Heise, Mark T. 2014 2014-12-31 PMC N 24373313.0 10.1016/b978-0-12-800098-4.00004-0 x1ajgymw 0.542742 Castrignano_2015, Ferris_2016, UNKNOWN_2004
38 Geoghegan_2018 The phylogenomics of evolving virus virulence Geoghegan, Jemma L.; Holmes, Edward C. 2018 2018-10-10 PMC N PMC7096893 30305704.0 10.1038/s41576-018-0055-5 f71jwdzj 0.540511 Johnson_2018, UNKNOWN_2004 Sironi_2015
39 Katze_2007 Lost in the world of functional genomics, systems biology, and translational research: Is there life after the Milstein award? Katze, Michael G.; Korth, Marcus J. 2007 2007-12-31 None N PMC1994668 17681845.0 10.1016/j.cytogfr.2007.06.019 kdws9vn2 0.539196 UNKNOWN_2004, Johnson_2018, Alcami_2000, Alcami_2000
40 Gutierrez_2019 Parallel molecular evolution and adaptation in viruses Gutierrez, Bernardo; Escalera-Zamudio, Marina; Pybus, Oliver G 2019 2019-02-28 PMC N PMC7102768 30703578.0 10.1016/j.coviro.2018.12.006 any83elf 0.535243 UNKNOWN_2004, Munjal_2018
41 Yadav_2013 Sequencing and Computational Approaches to Identification and Characterization of Microbial Organisms Yadav, Brijesh Singh; Ronda, Venkateswarlu; Vashista, Dinesh P; Sharma, Bhaskar 2013 2013-05-20 PMC N PMC4147756 25288901.0 10.4137/becb.s10886 xrxttrh2 0.531151 Vernikos_2008, Djikeng_2009, Smith_2013, Johnson_2018 Pokhriyal_2019
42 Narayanan_2008 SARS coronavirus accessory proteins Narayanan, Krishna; Huang, Cheng; Makino, Shinji 2008 2008-04-30 None N PMC2720074 18045721.0 10.1016/j.virusres.2007.10.009 2rvs0jxj 0.528558
43 Qiang_2004 Human genome research in China Qiang, Boqin 2004 2004-02-27 PMC N PMC7079922 15168679.0 10.1007/s00109-003-0515-y 0x85y8ch 0.528082 Vernikos_2008
44 Biron_2011 11 Proteomics and Host—Pathogen Interactions A Bright Future? Biron, David G.; Nedelkov, Dobrin; Missé, Dorothée; Holzmuller, Philippe 2011 2011-12-31 PMC N PMC7150365 10.1016/b978-0-12-384890-1.00011-x qjfd1lkw 0.527662 UNKNOWN_2004, Johnson_2018, Castrignano_2015 Biron_2017, Sironi_2015
45 Liu_Y_2011 10 Infectious Disease Genomics Liu, Yu-Tsueng 2011 2011-12-31 PMC N PMC7149397 10.1016/b978-0-12-384890-1.00010-8 fs6dj3dp 0.522833 Smith_2013 Liu_Y_2017, Spyrou_2019
46 Mueller_2009 Putting Synthesis into Biology: A Viral View of Genetic Engineering through De Novo Gene and Genome Synthesis Mueller, Steffen; Coleman, J. Robert; Wimmer, Eckard 2009 2009-03-27 PMC N PMC2728443 19318214.0 10.1016/j.chembiol.2009.03.002 1j8ethnx 0.520143 UNKNOWN_2004, Conzelmann_1996, Kosuri_2014, Djikeng_2009
47 Schäfer_2014 Systems approaches to coronavirus pathogenesis Schäfer, Alexandra; Baric, Ralph S; Ferris, Martin T 2014 2014-06-30 None N PMC4076299 24842079.0 10.1016/j.coviro.2014.04.007 4z5jzt82 0.519070 Conzelmann_1996, Ferris_2016, Alcami_2000
48 Nadin‐Davis_2008 Chapter 5 Lyssaviruses—Current Trends Nadin‐Davis, Susan A.; Fehlner‐Gardiner, Christine 2008 2008-12-31 PMC N PMC7119311 18585530.0 10.1016/s0065-3527(08)00005-5 3l2vgkz4 0.515944 Conzelmann_1996, Johnson_2018, UNKNOWN_2004, Walker_2010
49 Schlesinger_1993 Alphaviruses — vectors for the expression of heterologous genes Schlesinger, Sondra 1993 1993-01-31 PMC N 7764041.0 10.1016/0167-7799(93)90070-p 884d196k 0.505267
50 Smits_2013 Virus discovery: one step beyond Smits, Saskia L; Osterhaus, Albert DME 2013 2013-04-30 PMC N PMC7102788 23578938.0 10.1016/j.coviro.2013.03.007 hzu9cw2m 0.503760 Johnson_2018, UNKNOWN_2004, Conzelmann_1996
51 Rasmussen_2016 Genomic Signatures of Emerging Viruses: A New Era of Systems Epidemiology Rasmussen, Angela L.; Katze, Michael G. 2016 2016-05-11 PMC N PMC7104983 27173929.0 10.1016/j.chom.2016.04.016 47td1ml4 0.503095 UNKNOWN_2004, Johnson_2018, Conzelmann_1996 Schäfer_2014
52 Spyrou_2019 Ancient pathogen genomics as an emerging tool for infectious disease research Spyrou, Maria A.; Bos, Kirsten I.; Herbig, Alexander; Krause, Johannes 2019 2019-04-05 PMC N PMC7097038 30953039.0 10.1038/s41576-019-0119-1 oreg7rnj 0.496665 Vernikos_2008, Johnson_2018, UNKNOWN_2004 Pasin_2019
53 Haynes_2010 The Human Virome Haynes, Matthew; Rohwer, Forest 2010 2010-10-11 PMC N PMC7122492 10.1007/978-1-4419-7089-3_4 2y146igt 0.492094 Castrignano_2015, Li_L_2014, Guery_2014
54 Greninger_2018 A decade of RNA virus metagenomics is (not) enough Greninger, Alexander L. 2018 2018-01-15 PMC N PMC7114529 29055712.0 10.1016/j.virusres.2017.10.014 048xo7jn 0.491588 UNKNOWN_2013, UNKNOWN_2020 García-López_2019
55 Wohl_2016 GENOMIC ANALYSIS OF VIRAL OUTBREAKS Wohl, Shirlee; Schaffner, Stephen F.; Sabeti, Pardis C. 2016 2016-09-29 None N PMC5210220 27501264.0 10.1146/annurev-virology-110615-035747 m2iiswan 0.481279 Johnson_2018, UNKNOWN_2004, Djikeng_2009, Castrignano_2015 Robinson_2013
56 Lecuit_2017 Chapter 21 The Viruses of the Gut Microbiota Lecuit, M.; Eloit, M. 2017 2017-12-31 PMC N 10.1016/b978-0-12-804024-9.00021-5 97bmub1p 0.478101 Guery_2014
57 Gupta_2019 Next-Generation Sequencing and Its Application: Empowering in Public Health Beyond Reality Gupta, Nidhi; Verma, Vijay K. 2019 2019-09-13 PMC N PMC7122948 10.1007/978-981-13-8844-6_15 2ai1qwfn 0.473649 Smith_2013, Djikeng_2009, UNKNOWN_2004 Dwivedi_2017, Radford_2012
58 Liu_Y_2012 Infectomics Screening for Novel Antiviral Drug Targets Liu, Yuan; Yin, Qi; Yuan, Yao; Yang, Wenyong; Jiang, Chuangui; Huang, Canhua 2012 2012-10-16 PMC N PMC7163650 10.1002/ddr.21027 qh3q2ncu 0.473149
59 Lu_I_2020 Applying next-generation sequencing to unravel the mutational landscape in viral quasispecies Lu, I-Na; Muller, Claude P.; He, Feng Q. 2020 2020-07-02 PMC N 10.1016/j.virusres.2020.197963 1zw09fo5 0.468261 Djikeng_2009, Johnson_2018, Smith_2013
60 Ellis_2015 Chapter 36 Disseminated Infections A Clinical Overview Ellis, Simon; Ong, Edmund 2015 2015-12-31 PMC N PMC7149383 10.1016/b978-0-12-397169-2.00036-6 dr82ksuw 0.462633 Li_L_2014
61 Teeravechyan_2016 Deciphering the biology of porcine epidemic diarrhea virus in the era of reverse genetics Teeravechyan, Samaporn; Frantz, Phanramphoei Namprachan; Wongthida, Phonphimon; Chailangkarn, Thanathom; Jaru-ampornpan, Peera; Koonpaew, Surapong; Jongkaewwattana, Anan 2016 2016-12-02 PMC N PMC7114553 27212685.0 10.1016/j.virusres.2016.05.003 lfpa80sr 0.462550 Castrignano_2015, Conzelmann_1996
62 Parker_2016 An Ecological Framework of the Human Virome Provides Classification of Current Knowledge and Identifies Areas of Forthcoming Discovery Parker, Michael T. 2016 2016-09-30 NONCOMM N PMC5045143 27698618.0 t30dg6oj 0.462399 Johnson_2018, UNKNOWN_2004, Castrignano_2015
63 Johnson_2018 Viral metagenomics, protein structure, and reverse genetics: Key strategies for investigating coronaviruses Johnson, Bryan A.; Graham, Rachel L.; Menachery, Vineet D. 2018 2018-04-30 PMC N PMC5869085 29279138.0 10.1016/j.virol.2017.12.009 6vja5e5o 0.460794 UNKNOWN_2004, Mooney_2013, Duan_2015
64 Noll_2019 The Collaborative Cross: A Systems Genetics Resource for Studying Host-Pathogen Interactions Noll, Kelsey E.; Ferris, Martin T.; Heise, Mark T. 2019 2019-04-10 PMC N PMC6494101 30974083.0 10.1016/j.chom.2019.03.009 84sotgds 0.460088 Li_L_2014, Ferris_2016, Castrignano_2015 Maurizio_2016, Sironi_2015
65 Roingeard_2012 Viral detection by electron microscopy: past, present and future Roingeard, Philippe 2012 2012-01-09 PMC N PMC7161876 18627353.0 10.1042/bc20070173 iknoqb4d 0.459870 Conzelmann_1996
66 Ojosnegros_2010 Models of RNA virus evolution and their roles in vaccine design Ojosnegros, Samuel; Beerenwinkel, Niko 2010 2010-11-03 COMM-USE N PMC2981881 21067547.0 10.1186/1745-7580-6-s2-s5 0q928h3b 0.459105 UNKNOWN_2004, Alcami_2000, Alcami_2000
67 Höper_2017 Chapter Two Loeffler 4.0: Diagnostic Metagenomics Höper, Dirk; Wylezich, Claudia; Beer, Martin 2017 2017-12-31 PMC N PMC7112322 29029726.0 10.1016/bs.aivir.2017.08.001 oni76pna 0.458912 Vernikos_2008, Djikeng_2009, Johnson_2018 Kaszab_2020
68 Lipkin_2013 The changing face of pathogen discovery and surveillance Lipkin, W. Ian 2013 2013-01-03 None N PMC4098826 23268232.0 10.1038/nrmicro2949 0i3ewil9 0.454829
69 Agol_2008 The Origin and Evolution of Viruses Agol, Vadim I. 2008 2008-01-01 PMC N PMC7121209 10.1007/978-1-4020-8761-5_7 gy8d8285 0.452049
70 Mitchell_2013 Taxonomy Mitchell, Michael 2013 2013-08-26 PMC N PMC7123310 10.1007/978-3-642-40605-8_3 yjvwa1ot 0.452049 Mooney_2013, Walker_2010 Musser_2015
71 Moon_2012 Viral interactions with the host and microbiota in the intestine Moon, Clara; Stappenbeck, Thaddeus S 2012 2012-08-31 PMC N 22626624.0 10.1016/j.coi.2012.05.002 fb5umcev 0.451816
72 Hughes_2012 Drosophila as a genetic model for studying pathogenic human viruses Hughes, Tamara T.; Allen, Amanda L.; Bardin, Joseph E.; Christian, Megan N.; Daimon, Kansei; Dozier, Kelsey D.; Hansen, Caom L.; Holcomb, Lisa M.; Ahlander, Joseph 2012 2012-02-05 PMC N PMC3253880 22177780.0 10.1016/j.virol.2011.11.016 n3p4wefa 0.450067 Conzelmann_1996
73 Gonçalves_Rossi_2015 Advanced Molecular Surveillance of Hepatitis C Virus Gonçalves Rossi, Livia Maria; Escobar-Gutierrez, Alejandro; Rahal, Paula 2015 2015-03-13 COMM-USE N PMC4379565 25781918.0 10.3390/v7031153 wuu713l2 0.449291 Ferris_2016
74 Kellam_2006 Infectogenomics: Insights from the Host Genome into Infectious Diseases Kellam, Paul; Weiss, Robin A. 2006 2006-02-24 PMC N PMC7119327 16497580.0 10.1016/j.cell.2006.02.003 747du9a1 0.448198 UNKNOWN_2004, Tan_S_2007, Johnson_2018 Musser_2015
75 Lum_K_2016 Proteomic approaches to uncovering virus–host protein interactions during the progression of viral infection Lum, Krystal K; Cristea, Ileana M 2016 2016-03-01 None N PMC4919574 26817613.0 10.1586/14789450.2016.1147353 4xdw4303 0.439626 Conzelmann_1996, Alcami_2000
76 Traynor_2009 The Era of Genomic Epidemiology Traynor, Bryan J. 2009 2009-01-01 PMC N PMC2826447 19696518.0 10.1159/000235639 udt9uvtx 0.435184 UNKNOWN_2004, Johnson_2018, Castrignano_2015 Burgner_2006, Ladner_2019
77 Luciani_2012 Next generation deep sequencing and vaccine design: today and tomorrow Luciani, Fabio; Bull, Rowena A.; Lloyd, Andrew R. 2012 2012-09-30 PMC N PMC7127335 22721705.0 10.1016/j.tibtech.2012.05.005 atswrwjh 0.434612 Djikeng_2009, Johnson_2018, Conzelmann_1996
78 Stearns_2019 Frontiers in Molecular Evolutionary Medicine Stearns, Stephen C. 2019 2019-04-09 PMC N PMC7080150 30968167.0 10.1007/s00239-019-09893-5 0ak8azvm 0.434544 UNKNOWN_2004, Johnson_2018 Sironi_2015, Douam_2015
79 Colón-López_2019 Chapter 10 Emerging viral infections Colón-López, Daisy D.; Stefan, Christopher P.; Koehler, Jeffrey W. 2019 2019-12-31 PMC N PMC7150306 10.1016/b978-0-12-801496-7.00010-1 z6vsjmxn 0.429305 Mohtasham_2004
80 Belser_2011 The ferret as a model organism to study influenza A virus infection Belser, Jessica A.; Katz, Jacqueline M.; Tumpey, Terrence M. 2011 2011-08-02 PMC N PMC3180220 21810904.0 10.1242/dmm.007823 bhq8t5nq 0.427619 Walker_2010
81 O’Brien_2008 State of cat genomics O’Brien, Stephen J.; Johnson, Warren; Driscoll, Carlos; Pontius, Joan; Pecon-Slattery, Jill; Menotti-Raymond, Marilyn 2008 2008-06-30 PMC N PMC7126825 18471926.0 10.1016/j.tig.2008.03.004 dujk2rzj 0.424127 Munjal_2018
82 Law_G_2013 SYSTEMS VIROLOGY: HOST-DIRECTED APPROACHES TO VIRAL PATHOGENESIS AND DRUG TARGETING Law, G. Lynn; Korth, Marcus J.; Benecke, Arndt G.; Katze, Michael G. 2013 2013-06-03 None N PMC4028060 23728212.0 10.1038/nrmicro3036 mduqn7dq 0.422619 UNKNOWN_2004, Tan_S_2007, Johnson_2018
83 Lipkin_2009 Diagnostics and Discovery in Viral Hemorrhagic Fevers Lipkin, W. Ian; Palacios, Gustavo; Briese, Thomas 2009 2009-09-01 None N PMC4109264 19751404.0 10.1111/j.1749-6632.2009.05056.x if4t2vgu 0.422287 Li_L_2014, UNKNOWN_2004 Malik_2019
84 Lipkin_2013 Viral surveillance and discovery Lipkin, Walter Ian; Firth, Cadhla 2013 2013-04-01 PMC N PMC4310698 23602435.0 10.1016/j.coviro.2013.03.010 9yzf0hhn 0.420928 UNKNOWN_2004
85 Aubry_2015 Flavivirus reverse genetic systems, construction techniques and applications: A historical perspective Aubry, Fabien; Nougairède, Antoine; Gould, Ernest A.; de Lamballerie, Xavier 2015 2015-02-28 PMC N 25512228.0 10.1016/j.antiviral.2014.12.007 gtd11g0r 0.420531 Conzelmann_1996, UNKNOWN_2004, Djikeng_2009, Johnson_2018
86 Mendez-Rios_2010 Global approaches to study protein–protein interactions among viruses and hosts Mendez-Rios, Jorge; Uetz, Peter 2010 2010-02-01 PMC N PMC2832059 20143950.0 10.2217/fmb.10.7 5y71vs9o 0.418207 Johnson_2018, UNKNOWN_2004
87 Carrasco-Hernandez_2017 Are RNA Viruses Candidate Agents for the Next Global Pandemic? A Review Carrasco-Hernandez, R; Jácome, Rodrigo; López Vidal, Yolanda; Ponce de León, Samuel 2017 2017-12-15 PMC N PMC7108571 28985316.0 10.1093/ilar/ilx026 emhj6n4o 0.417999 UNKNOWN_2004
88 de_Groot_2012 Elucidation and Clinical Role of Emerging Viral Respiratory Tract Infections in Children de Groot, Ronald; Ahout, Inge; Ferwerda, Gerben 2012 2012-12-11 PMC N PMC7123406 23654068.0 10.1007/978-1-4614-4726-9_16 r8tmcsyj 0.417169 Walker_2010
89 García-López_2019 Beyond cells – The virome in the human holobiont García-López, Rodrigo; Pérez-Brocal, Vicente; Moya, Andrés 2019 2019-07-01 COMM-USE N PMC6717880 31528630.0 10.15698/mic2019.09.689 943djslj 0.415050 UNKNOWN_2004, Johnson_2018, Guery_2014
90 Kao_R_2014 Supersize me: how whole-genome sequencing and big data are transforming epidemiology Kao, Rowland R.; Haydon, Daniel T.; Lycett, Samantha J.; Murcia, Pablo R. 2014 2014-05-31 PMC N PMC7125769 24661923.0 10.1016/j.tim.2014.02.011 mscsw8z0 0.409719 UNKNOWN_2004, Castrignano_2015, Johnson_2018
91 Arroyo-Olarte_2018 Illuminating pathogen–host intimacy through optogenetics Arroyo-Olarte, Ruben Dario; Thurow, Laura; Kozjak-Pavlovic, Vera; Gupta, Nishith 2018 2018-07-12 COMM-USE N PMC6042787 30001435.0 10.1371/journal.ppat.1007046 fqdv3ohv 0.403645 UNKNOWN_2004, Johnson_2018, Mooney_2013, Castrignano_2015 Manjunath_2006, Douam_2015, Bier_2011
92 Gustin_2012 Innovations in modeling influenza virus infections in the laboratory Gustin, Kortney M.; Belser, Jessica A.; Katz, Jacqueline M.; Tumpey, Terrence M.; Maines, Taronna R. 2012 2012-06-30 PMC N PMC7127498 22520511.0 10.1016/j.tim.2012.03.006 9onbvv9n 0.403083 Walker_2010 Gaska_2015
93 Runco_2011 Harnessing DNA Synthesis to Develop Rapid Responses to Emerging and Pandemic Pathogens Runco, Lisa M.; Coleman, J. Robert 2011 2011-03-16 COMM-USE N PMC3595711 23533775.0 10.4061/2011/765763 3xtoxjp8 0.402108
94 Galao_2007 Saccharomyces cerevisiae: a versatile eukaryotic system in virology Galao, Rui P; Scheller, Nicoletta; Alves-Rodrigues, Isabel; Breinig, Tanja; Meyerhans, Andreas; Díez, Juana 2007 2007-10-10 COMM-USE N PMC2148055 17927824.0 10.1186/1475-2859-6-32 ffn59sgf 0.397180 Conzelmann_1996 Alves-Rodrigues_2006, Hughes_2012
95 Masters_2005 Coronavirus Reverse Genetics by Targeted RNA Recombination Masters, P. S.; Rottier, P. J. M. 2005 2005-01-01 PMC N PMC7122231 15609511.0 10.1007/3-540-26765-4_5 eh4dij8h 0.396966
96 Chua_2019 Alternative Experimental Models for Studying Influenza Proteins, Host–Virus Interactions and Anti-Influenza Drugs Chua, Sonja C. J. H.; Tan, Hui Qing; Engelberg, David; Lim, Lina H. K. 2019 2019-09-30 COMM-USE N PMC6958409 31575020.0 10.3390/ph12040147 71e400kr 0.394282 UNKNOWN_2004
97 Artika_2020 Pathogenic viruses: Molecular detection and characterization Artika, I Made; Wiyatno, Ageng; Ma'roef, Chairin Nisa 2020 2020-07-31 PMC N PMC7106233 32006706.0 10.1016/j.meegid.2020.104215 wq5zqzvv 0.390598 Conzelmann_1996, UNKNOWN_2004
98 Fraser_2004 A genomics-based approach to biodefence preparedness Fraser, Claire M. 2004 2004-01-01 PMC N PMC7097618 14708013.0 10.1038/nrg1245 xe91ctl0 0.390308
99 Kuhn_2020 Virus Taxonomy Kuhn, Jens H. 2020 2020-12-31 PMC N PMC7157452 10.1016/b978-0-12-809633-8.21231-4 0ckt6f92 0.387938 Munjal_2018, Conzelmann_1996
100 Perreira_2016 Chapter One Functional Genomic Strategies for Elucidating Human–Virus Interactions Will CRISPR Knockout RNAi and Haploid Cells? Perreira, Jill M.; Meraner, Paul; Brass, Abraham L. 2016 2016-12-31 PMC N PMC7112329 26997589.0 10.1016/bs.aivir.2015.11.001 4rc9bgba 0.386526 Johnson_2018, Conzelmann_1996, UNKNOWN_2004
101 Mihalov-Kovács_2014 The fecal virome of domesticated animals Mihalov-Kovács, Eszter; Fehér, Enikő; Martella, Vito; Bányai, Krisztián; Farkas, Szilvia L. 2014 2014-02-01 PMC N PMC4188178 25674581.0 10.1007/s13337-014-0192-1 k0fw3vr3 0.384103 Li_L_2014
102 Stobart_2014 RNA Virus Reverse Genetics and Vaccine Design Stobart, Christopher C.; Moore, Martin L. 2014 2014-06-25 COMM-USE N PMC4113782 24967693.0 10.3390/v6072531 84qt2qhx 0.383969 Conzelmann_1996
103 Conzelmann_1996 Genetic engineering of animal RNA viruses Conzelmann, Karl-Klaus; Meyers, Gregor 1996 1996-10-31 PMC N 8899964.0 10.1016/0966-842x(96)10062-7 vnynbijl 0.383742 Alcami_2000, Alcami_2000 Stobart_2014
104 Wilson_2005 Molecular analyses of disease pathogenesis: Application of bovine microarrays Wilson, Heather L.; Aich, Palok; Roche, Fiona M.; Jalal, Shakiba; Hodgson, Paul D.; Brinkman, Fiona S.L.; Potter, Andy; Babiuk, Lorne A.; Griebel, Philip J. 2005 2005-05-15 PMC N PMC7112672 15808306.0 10.1016/j.vetimm.2005.02.015 r41ilao6 0.381009 UNKNOWN_2004, Johnson_2018, Castrignano_2015 Capilla_2007, Shannon_2010
105 Wong_2018 Type I interferon receptor knockout mice as models for infection of highly pathogenic viruses with outbreak potential Wong, Gary; Qiu, Xiang-Guo 2018 2018-02-09 COMM-USE N PMC5869239 29511140.0 10.24272/j.issn.2095-8137.2017.052 o0gkoyrd 0.378534
106 Marsh_2005 The role of reverse genetics in the development of vaccines against respiratory viruses Marsh, GA; Tannock, GA 2005 2005-04-20 PMC N PMC7105756 15833074.0 10.1517/14712598.5.3.369 33vouyzo 0.373308 Forde_2005
107 Ratra_2008 Functional genomics as a tool in virus research Ratra, Ruchi; Lal, Sunil K. 2008 2008-06-01 PMC N PMC3450177 23100713.0 10.1007/s12088-008-0032-3 zaimorg0 0.368971 UNKNOWN_2004, Johnson_2018, Smith_2013
108 Liu_M_2006 Early days: genomics and human responses to infection Liu, Minghsun; Popper, Stephen J; Rubins, Kathleen H; Relman, David A 2006 2006-06-30 PMC N PMC7108404 16679048.0 10.1016/j.mib.2006.04.006 lh3wbq46 0.368255 UNKNOWN_2004, Castrignano_2015, Sabroe_2007, Johnson_2018 Wilson_2005, Shannon_2010
109 Eder_2011 Molecular tools in drug research — translational medicine Eder, Sandra; Wacheck, Volker 2011 2011-01-31 PMC N PMC7122479 10.1007/978-3-7091-0144-5_17 vfw13g7i 0.367708 UNKNOWN_2004, Sharon_2010, Johnson_2018 Dwivedi_2017, Mancone_2013, Bumcrot_2006
110 Friedel_2013 Computational Analysis of Virus–Host Interactomes Friedel, Caroline C. 2013 2013-07-20 PMC N PMC7121319 23996253.0 10.1007/978-1-62703-601-6_8 dvcrez5d 0.367214 Johnson_2018, UNKNOWN_2004, Castrignano_2015 Bailer_2009
111 Van_Borm_2014 Next-Generation Sequencing in Veterinary Medicine: How Can the Massive Amount of Information Arising from High-Throughput Technologies Improve Diagnosis, Control, and Management of Infectious Diseases? Van Borm, Steven; Belák, Sándor; Freimanis, Graham; Fusaro, Alice; Granberg, Fredrik; Höper, Dirk; King, Donald P.; Monne, Isabella; Orton, Richard; Rosseel, Toon 2014 2014-08-11 PMC N PMC7123048 25399113.0 10.1007/978-1-4939-2004-4_30 4wlxbbh4 0.359723 UNKNOWN_2004, Djikeng_2009, Johnson_2018, Sharon_2010, Yadav_2013
112 Douam_2015 Genetic Dissection of the Host Tropism of Human-Tropic Pathogens Douam, Florian; Gaska, Jenna M.; Winer, Benjamin Y.; Ding, Qiang; von Schaewen, Markus; Ploss, Alexander 2015 2015-11-23 PMC N PMC5075990 26407032.0 10.1146/annurev-genet-112414-054823 cygqau6d 0.354494 Li_L_2014 Gaska_2015
113 Zheng_2018 Immune responses in influenza A virus and human coronavirus infections: an ongoing battle between the virus and host Zheng, Jian; Perlman, Stanley 2018 2018-02-28 PMC N PMC5835172 29172107.0 10.1016/j.coviro.2017.11.002 cfnoxhtd 0.352306 UNKNOWN_2004, Conzelmann_1996, Walker_2010
114 Pasin_2019 Harnessed viruses in the age of metagenomics and synthetic biology: an update on infectious clone assembly and biotechnologies of plant viruses Pasin, Fabio; Menzel, Wulf; Daròs, José‐Antonio 2019 2019-02-28 COMM-USE N PMC6523588 30677208.0 10.1111/pbi.13084 q1ab7tg9 0.345270 UNKNOWN_2004, Johnson_2018, Conzelmann_1996, Dolja_2013
115 Suthar_2014 Systems analysis of West Nile virus infection Suthar, Mehul S; Pulendran, Bali 2014 2014-06-30 None N PMC4104408 24851811.0 10.1016/j.coviro.2014.04.010 0k49le7q 0.344710 Walker_2010
116 Sedov_2020 Modeling quarantine during epidemics by mass-testing with drones Leonid Sedov; Alexander Krasnochub; valentin polishchuk 2020 2020-04-20 BioRxiv N 10.1101/2020.04.15.20067025 98i0dwat 0.342756
117 Loh_P_1997 Viral Pathogens of the Penaeid Shrimp Loh, Philip C.; Tapay, Lourdes M.; Lu, Yuanan; Nadala, E.C.B. 1997 1997-12-31 PMC N 9233435.0 10.1016/s0065-3527(08)60290-0 cxkbt0vy 0.342180 Conzelmann_1996
118 Castrignano_2015 The metagenomic approach and causality in virology Castrignano, Silvana Beres; Nagasse-Sugahara, Teresa Keico 2015 2015-04-01 NONCOMM N PMC4390074 25902566.0 10.1590/s0034-8910.2015049005475 ivu4erpq 0.341424 UNKNOWN_2004, Johnson_2018, Ferris_2016
119 Burgner_2006 Genetic susceptibility to infectious diseases: big is beautiful, but will bigger be even better? Burgner, David; Jamieson, Sarra E; Blackwell, Jenefer M 2006 2006-10-31 None N PMC2330096 17008174.0 10.1016/s1473-3099(06)70601-6 mq927art 0.339925 UNKNOWN_2004, Johnson_2018, Castrignano_2015 Maurizio_2016
120 Hraber_2020 Resources to Discover and Use Short Linear Motifs in Viral Proteins Hraber, Peter; O’Maille, Paul E.; Silberfarb, Andrew; Davis-Anderson, Katie; Generous, Nicholas; McMahon, Benjamin H.; Fair, Jeanne M. 2020 2020-01-31 PMC N PMC7114124 31427097.0 10.1016/j.tibtech.2019.07.004 5vjqrnwh 0.339065
121 O'Malley_2005 Whole-genome patenting O'Malley, Maureen A.; Bostanci, Adam; Calvert, Jane 2005 2005-05-10 PMC N PMC7097348 15883589.0 10.1038/nrg1613 mel9fxw8 0.338304 Verbeure_2006
122 Andeweg_2008 Virogenomics: the virus–host interaction revisited Andeweg, Arno C; Haagmans, Bart L; Osterhaus, Albert DME 2008 2008-10-31 PMC N PMC7108363 18822388.0 10.1016/j.mib.2008.09.010 g983bu7q 0.336023 Johnson_2018, UNKNOWN_2004
123 Radford_2012 Application of next-generation sequencing technologies in virology Radford, Alan D.; Chapman, David; Dixon, Linda; Chantrey, Julian; Darby, Alistair C.; Hall, Neil 2012 2012-09-23 COMM-USE N PMC3709572 22647373.0 10.1099/vir.0.043182-0 u8x9drva 0.331889 UNKNOWN_2004, Johnson_2018, Djikeng_2009
124 Lecuit_2013 The human virome: new tools and concepts Lecuit, Marc; Eloit, Marc 2013 2013-10-31 PMC N 23906500.0 10.1016/j.tim.2013.07.001 enqf0gm4 0.330916 Guery_2014, UNKNOWN_2004
125 Qureshi_2018 A review on current status of antiviral siRNA Qureshi, Abid; Tantray, Vaqar Gani; Kirmani, Altaf Rehman; Ahangar, Abdul Ghani 2018 2018-04-15 PMC N PMC7169094 29656441.0 10.1002/rmv.1976 2jofy8fo 0.328009 Conzelmann_1996
126 Zheng_2011 Mass spectrometry based proteomic studies on viruses and hosts – A review Zheng, Jie; Sugrue, Richard J.; Tang, Kai 2011 2011-09-30 PMC N PMC7094357 21839192.0 10.1016/j.aca.2011.06.045 058o3nmn 0.324133 Conzelmann_1996, UNKNOWN_2004, Djikeng_2009, Johnson_2018
127 Kaszab_2020 Chapter 2 Metagenomics revealing new virus species in farm and pet animals and aquaculture Kaszab, Eszter; Doszpoly, Andor; Lanave, Gianvito; Verma, Atul; Bányai, Krisztián; Malik, Yashpal Singh; Marton, Szilvia 2020 2020-12-31 PMC N PMC7149329 10.1016/b978-0-12-816352-8.00002-3 j8go4hsg 0.322978
128 Li_L_2014 Genomic analysis of emerging pathogens: methods, application and future trends Li, Lucy M; Grassly, Nicholas C; Fraser, Christophe 2014 2014-11-22 COMM-USE N PMC4283782 25418281.0 10.1186/s13059-014-0541-9 vubszdp2 0.319771
129 Heaton_2019 Harnessing host–virus evolution in antiviral therapy and immunotherapy Heaton, Steven M 2019 2019-07-08 COMM-USE N PMC6613463 31312450.0 10.1002/cti2.1067 vwfk96we 0.318265 Conzelmann_1996, UNKNOWN_2004 Leonard_2005
130 Somerville_2015 Molecular diagnosis of respiratory viruses Somerville, Lucy K.; Mala Ratnamohan, V.; Dwyer, Dominic E.; Kok, Jen 2015 2015-04-30 PMC N PMC7130554 25764205.0 10.1097/pat.0000000000000240 3yaqeirk 0.316293 Djikeng_2009, Vernikos_2008, Belák_1993
131 Houldcroft_2017 Clinical and biological insights from viral genome sequencing Houldcroft, Charlotte J.; Beale, Mathew A.; Breuer, Judith 2017 2017-01-16 PMC N PMC7097211 28090077.0 10.1038/nrmicro.2016.182 i1mpov7k 0.311001 UNKNOWN_2020
132 Stark_2005 Molecular advances in the cell biology of SARS-CoV and current disease prevention strategies Stark, Caren J; Atreya, CD 2005 2005-04-15 COMM-USE N PMC1087510 15833113.0 10.1186/1743-422x-2-35 0fitbwuv 0.309791 Johnson_2018, Castrignano_2015, Walker_2010
133 Gaska_2015 Study of viral pathogenesis in humanized mice Gaska, Jenna M; Ploss, Alexander 2015 2015-04-30 None N PMC4456257 25618248.0 10.1016/j.coviro.2015.01.002 mmg8jug2 0.308127 Conzelmann_1996 Douam_2015
134 Gautam_2019 Bioinformatics Applications in Advancing Animal Virus Research Gautam, Ablesh; Tiwari, Ashish; Malik, Yashpal Singh 2019 2019-06-06 PMC N PMC7121192 10.1007/978-981-13-9073-9_23 tv2ntug6 0.307394 Johnson_2018, UNKNOWN_2004, Conzelmann_1996
135 Bexfield_2011 Metagenomics and the molecular identification of novel viruses Bexfield, Nicholas; Kellam, Paul 2011 2011-11-30 PMC N PMC7110547 21111643.0 10.1016/j.tvjl.2010.10.014 bxu3sklz 0.307112 Johnson_2018, Djikeng_2009, Sharon_2010
136 Häfner_2018 Microbes and Infection turns 20 Häfner, Sophia J.; Ojcius, David M. 2018 2018-11-30 PMC N 29857123.0 10.1016/j.micinf.2018.05.002 tk3h4f92 0.306760 UNKNOWN_2020, Desai_2019, UNKNOWN_2013
137 Le_Duc_2016 Chapter 16 Emerging Viral Diseases Why We Need to Worry about Bats, Camels, and Airplanes Le Duc, James W.; Nathanson, Neal 2016 2016-12-31 PMC N PMC7170184 10.1016/b978-0-12-800964-2.00016-1 jf2xl3vl 0.306355 Olsen_1993
138 Bradbury_2003 Custom-made vaccines at speed Bradbury, Jane 2003 2003-06-15 PMC N PMC7129312 12821292.0 10.1016/s1359-6446(03)02741-7 z1nigtb5 0.305326 Walker_2010
139 Daszak_2011 The search for meaning in virus discovery Daszak, Peter; Lipkin, W Ian 2011 2011-12-31 None N PMC4310690 22440920.0 10.1016/j.coviro.2011.10.010 keuhb6eq 0.304762 Johnson_2018, Djikeng_2009 Lipkin_2009
140 Tomar_2020 Chapter 19 Advances in structure-assisted antiviral discovery for animal viral diseases Tomar, Shailly; Mahajan, Supreeti; Kumar, Ravi 2020 2020-12-31 PMC N PMC7149589 10.1016/b978-0-12-816352-8.00019-9 mog52dn8 0.300509 Johnson_2018, Conzelmann_1996, UNKNOWN_2004