Topic 10 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 05 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Shi_T_2019 The Etiological Role of Common Respiratory Viruses in Acute Respiratory Infections in Older Adults: A Systematic Review and Meta-analysis Shi, Ting; Arnott, Andrew; Semogas, Indre; Falsey, Ann R; Openshaw, Peter; Wedzicha, Jadwiga A; Campbell, Harry; Nair, Harish 2019 2019-03-08 COMM-USE N PMC7107439 30849176.0 10.1093/infdis/jiy662 8vxqr3mc 0.571001 Choi_2017, Sun_H_2018 Gamiño‐Arroyo_2016, Falsey_2014, Chu_H_2013, Luchsinger_2012
2 Shi_T_2015 Aetiological role of common respiratory viruses in acute lower respiratory infections in children under five years: A systematic review and meta–analysis Shi, Ting; McLean, Kenneth; Campbell, Harry; Nair, Harish 2015 2015-06-17 COMM-USE N PMC4593292 26445672.0 10.7189/jogh.05.010408 13cotyfb 0.550159 Crowe_2014, Choi_2017, Coverstone_2019 Gamiño‐Arroyo_2016, Do_L_2016, Antunes_2010, Chu_H_2013
3 Bhuiyan_2018 The contribution of viruses and bacteria to community-acquired pneumonia in vaccinated children: a case–control study Bhuiyan, Mejbah Uddin; Snelling, Thomas L; West, Rachel; Lang, Jurissa; Rahman, Tasmina; Granland, Caitlyn; de Gier, Camilla; Borland, Meredith L; Thornton, Ruth B; Kirkham, Lea-Ann S; Sikazwe, Chisha; Martin, Andrew C; Richmond, Peter C; Smith, David W; Jaffe, Adam; Blyth, Christopher C 2018 2018-10-18 NONCOMM N PMC6467248 30337417.0 10.1136/thoraxjnl-2018-212096 efxuot0d 0.448429 Choi_2017 Gamiño‐Arroyo_2016, Chu_H_2013
4 Miller_2011 Host and viral factors associated with severity of human rhinovirus–associated infant respiratory tract illness Miller, E. Kathryn; Williams, John V.; Gebretsadik, Tebeb; Carroll, Kecia N.; Dupont, William D.; Mohamed, Yassir A.; Morin, Laura-Lee; Heil, Luke; Minton, Patricia A.; Woodward, Kimberly; Liu, Zhouwen; Hartert, Tina V. 2011 2011-04-30 None N PMC3070861 21269669.0 10.1016/j.jaci.2010.11.041 n5kd1dry 0.446809 Choi_2017, Sun_H_2018 Chu_H_2013, Gamiño‐Arroyo_2016, Espinosa_2017
5 Mazur_2016 Severity of Respiratory Syncytial Virus Lower Respiratory Tract Infection With Viral Coinfection in HIV-Uninfected Children Mazur, Natalie I.; Bont, Louis; Cohen, Adam L.; Cohen, Cheryl; von Gottberg, Anne; Groome, Michelle J.; Hellferscee, Orienka; Klipstein-Grobusch, Kerstin; Mekgoe, Omphile; Naby, Fathima; Moyes, Jocelyn; Tempia, Stefano; Treurnicht, Florette K.; Venter, Marietje; Walaza, Sibongile; Wolter, Nicole; Madhi, Shabir A. 2016 2016-12-07 PMC N PMC5712444 27927871.0 10.1093/cid/ciw756 i61aeuww 0.438813 Choi_2017, Sun_H_2018 Gamiño‐Arroyo_2016, Chu_H_2013, Falsey_2014
6 Ogimi_2018 Characteristics and Outcomes of Coronavirus Infection in Children: The Role of Viral Factors and an Immunocompromised State Ogimi, Chikara; Englund, Janet A; Bradford, Miranda C; Qin, Xuan; Boeckh, Michael; Waghmare, Alpana 2018 2018-02-13 PMC N PMC6437838 29447395.0 10.1093/jpids/pix093 3qn012qs 0.403138 Coverstone_2019, Koff_2020, Durigon_2010, Choi_2017 Gamiño‐Arroyo_2016, Baier_2018, Antunes_2010
7 Souty_2019 Baseline characteristics and clinical symptoms related to respiratory viruses identified among patients presenting with influenza-like illness in primary care Souty, C.; Masse, S.; Valette, M.; Behillil, S.; Bonmarin, I.; Pino, C.; Turbelin, C.; Capai, L.; Vilcu, A.M.; Lina, B.; van der Werf, S.; Blanchon, T.; Falchi, A.; Hanslik, T. 2019 2019-09-30 PMC N 30703528.0 10.1016/j.cmi.2019.01.014 8bvpehlq 0.390045 Choi_2017
8 O'Grady_2016 Prevalence, codetection and seasonal distribution of upper airway viruses and bacteria in children with acute respiratory illnesses with cough as a symptom O'Grady, K.F.; Grimwood, K.; Sloots, T.P.; Whiley, D.M.; Acworth, J.P.; Phillips, N.; Goyal, V.; Chang, A.B. 2016 2016-06-30 PMC N PMC7128568 26916343.0 10.1016/j.cmi.2016.02.004 aii0tj9x 0.383994 Choi_2017 Lehtinen_2006, Gamiño‐Arroyo_2016, Chu_H_2013
9 Nunes_2014 Polyomaviruses-associated respiratory infections in HIV-infected and HIV-uninfected children Nunes, Marta C.; Kuschner, Zachary; Rabede, Zelda; Cutland, Clare L.; Madimabe, Richard; Kuwanda, Locadiah; Klugman, Keith P.; Adrian, Peter V.; Madhi, Shabir A. 2014 2014-12-31 PMC N 25467863.0 10.1016/j.jcv.2014.10.013 xs936r6u 0.381487 Choi_2017, Durigon_2010, Fry_A_2007, Sun_H_2018, Mourez_2009
10 Bergroth_2020 Rhinovirus Type in Severe Bronchiolitis and the Development of Asthma Bergroth, Eija; Aakula, Matilda; Elenius, Varpu; Remes, Sami; Piippo-Savolainen, Eija; Korppi, Matti; Piedra, Pedro A.; Bochkov, Yury A.; Gern, James E.; Camargo, Carlos A.; Jartti, Tuomas 2020 2020-02-29 PMC N PMC7012669 31520837.0 10.1016/j.jaip.2019.08.043 h3jdb01n 0.380308 Sun_H_2018, Choi_2017 Chu_H_2013, Bekhof_2013, Patel_2007
11 Puig_2008 Incidence and risk factors of lower respiratory tract illnesses during infancy in a Mediterranean birth cohort Puig, Carme; Sunyer, Jordi; Garcia‐Algar, Oscar; Muñoz, Laura; Pacifici, Roberta; Pichini, Simona; Vall, Oriol 2008 2008-07-09 PMC N PMC7159778 18631341.0 10.1111/j.1651-2227.2008.00939.x a7d9a2w1 0.376600 Choi_2017
12 Katsurada_2017 The impact of virus infections on pneumonia mortality is complex in adults: a prospective multicentre observational study Katsurada, Naoko; Suzuki, Motoi; Aoshima, Masahiro; Yaegashi, Makito; Ishifuji, Tomoko; Asoh, Norichika; Hamashige, Naohisa; Abe, Masahiko; Ariyoshi, Koya; Morimoto, Konosuke 2017 2017-12-06 COMM-USE N PMC5719746 29212450.0 10.1186/s12879-017-2858-y 6yxmaihl 0.376554 Choi_2017, Sun_H_2018, Fry_A_2007
13 Lukšić_2013 Viral etiology of hospitalized acute lower respiratory infections in children under 5 years of age – a systematic review and meta-analysis Lukšić, Ivana; Kearns, Patrick K; Scott, Fiona; Rudan, Igor; Campbell, Harry; Nair, Harish 2013 2013-04-23 None N PMC3641872 23630140.0 10.3325/cmj.2013.54.122 8gfujgxq 0.372703 Choi_2017, Vabret_2003, Sun_H_2018, Fry_A_2007 Gamiño‐Arroyo_2016
14 Annamalay_2016 Respiratory viruses in young South African children with acute lower respiratory infections and interactions with HIV Annamalay, Alicia A.; Abbott, Salome; Sikazwe, Chisha; Khoo, Siew-Kim; Bizzintino, Joelene; Zhang, Guicheng; Laing, Ingrid; Chidlow, Glenys R.; Smith, David W.; Gern, James; Goldblatt, Jack; Lehmann, Deborah; Green, Robin J.; Le Souëf, Peter N. 2016 2016-08-31 PMC N PMC7106452 27317881.0 10.1016/j.jcv.2016.06.002 qvqz1jy2 0.351284 Choi_2017, Durigon_2010, Fry_A_2007, Elmore_2019 Gamiño‐Arroyo_2016, Chu_H_2013, Espinosa_2017
15 Annamalay_2016 Rhinovirus C is associated with wheezing and rhinovirus A is associated with pneumonia in hospitalized children in Morocco Annamalay, Alicia A.; Jroundi, Imane; Bizzintino, Joelene; Khoo, Siew‐Kim; Zhang, Guicheng; Lehmann, Deborah; Laing, Ingrid A.; Gern, James; Goldblatt, Jack; Mahraoui, Chafiq; Benmessaoud, Rachid; Moraleda, Cinta; Bassat, Quique; Le Souëf, Peter 2016 2016-09-30 PMC N PMC7166858 27677921.0 10.1002/jmv.24684 brfmxl09 0.345176 Choi_2017, Bastien_2006, Sun_H_2018, Khamis_2012, Mourez_2009
16 Hasan_2014 Incidence and Etiology of Acute Lower Respiratory Tract Infections in Hospitalized Children Younger Than 5 Years in Rural Thailand Hasan, Reem; Rhodes, Julia; Thamthitiwat, Somsak; Olsen, Sonja J.; Prapasiri, Prabda; Naorat, Sathapana; Chittaganpitch, Malinee; Henchaichon, Sununta; Dejsirilert, Surang; Srisaengchai, Prasong; Sawatwong, Pongpun; Jorakate, Possawat; Kaewpan, Anek; Fry, Alicia M.; Erdman, Dean; Chuananon, Somchai; Amornintapichet, Tussanee; Maloney, Susan A.; Baggett, Henry C. 2014 2014-02-01 PMC N PMC4667718 24030346.0 10.1097/inf.0000000000000062 ngzxgsk9 0.334324 Choi_2017, Durigon_2010, Fry_A_2007, Koff_2020 Gamiño‐Arroyo_2016, Chen_2014
17 Chowdhury_2020 Viral etiology of pneumonia among severely malnourished under-five children in an urban hospital, Bangladesh Chowdhury, Fahmida; Shahid, Abu Sadat Mohammad Sayeem Bin; Ghosh, Probir Kumar; Rahman, Mustafizur; Hassan, Md. Zakiul; Akhtar, Zubair; Muneer, S. Mah-E-; Shahrin, Lubaba; Ahmed, Tahmeed; Chisti, Mohammod Jobayer 2020 2020-02-04 COMM-USE N PMC6999894 32017782.0 10.1371/journal.pone.0228329 f8oeuw5g 0.318428 Choi_2017, Sun_H_2018, Vabret_2003 Chen_2014, Gamiño‐Arroyo_2016, Bekhof_2013
18 Sarna_2018 Timing of First Respiratory Virus Detections in Infants: A Community-Based Birth Cohort Study Sarna, Mohinder; Ware, Robert S; Lambert, Stephen B; Sloots, Theo P; Nissen, Michael D; Grimwood, Keith 2018 2018-02-01 PMC N PMC7107408 29165576.0 10.1093/infdis/jix599 zgk45ey2 0.314757 Coverstone_2019, Koff_2020, Durigon_2010 Chu_H_2013, Gamiño‐Arroyo_2016, Sarna_2017
19 Mhimbira_2019 Prevalence and clinical significance of respiratory viruses and bacteria detected in tuberculosis patients compared to household contact controls in Tanzania: a cohort study Mhimbira, F.; Hiza, H.; Mbuba, E.; Hella, J.; Kamwela, L.; Sasamalo, M.; Ticlla, M.; Said, K.; Mhalu, G.; Chiryamkubi, M.; Schindler, C.; Reither, K.; Gagneux, S.; Fenner, L. 2019 2019-01-31 PMC N PMC7128396 29581053.0 10.1016/j.cmi.2018.03.019 s3rgxtg6 0.314668 Choi_2017, Fry_A_2007, Durigon_2010 Do_L_2016
20 Sarna_2017 Viruses causing lower respiratory symptoms in young children: findings from the ORChID birth cohort Sarna, Mohinder; Lambert, Stephen B; Sloots, Theo P; Whiley, David M; Alsaleh, Asma; Mhango, Lebogang; Bialasiewicz, Seweryn; Wang, David; Nissen, Michael D; Grimwood, Keith; Ware, Robert S 2017 2017-12-15 None N PMC6166599 29247051.0 10.1136/thoraxjnl-2017-210233 xn5p86hg 0.313524 Choi_2017, Coverstone_2019, Durigon_2010, Koff_2020, Navascués_2018 Chu_H_2013, Gamiño‐Arroyo_2016
21 Venarske_2006 The Relationship of Rhinovirus-Associated Asthma Hospitalizations with Inhaled Corticosteroids and Smoking Venarske, Daniel L.; Busse, William W.; Griffin, Marie R.; Gebretsadik, Tebeb; Shintani, Ayumi K.; Minton, Patricia A.; Peebles, R. Stokes; Hamilton, Robert; Weisshaar, Elizabeth; Vrtis, Rose; Higgins, Stanley B.; Hartert, Tina V. 2006 2006-06-01 PMC N PMC7109695 16652282.0 10.1086/503809 z04kvkkr 0.311808 Choi_2017 Bekhof_2013, Turunen_2016
22 Wang_2015 Incidence of viral infection detected by PCR and real‐time PCR in childhood community‐acquired pneumonia: A meta‐analysis Wang, Min; Cai, Feng; Wu, Xiaodong; Wu, Ting; Su, Xin; Shi, Yi 2015 2015-01-23 PMC N PMC7169115 25615588.0 10.1111/resp.12472 joruh3sv 0.309366 Choi_2017, Coverstone_2019, Durigon_2010, Navascués_2018
23 Cohen_2015 Parainfluenza Virus Infection Among Human Immunodeficiency Virus (HIV)-Infected and HIV-Uninfected Children and Adults Hospitalized for Severe Acute Respiratory Illness in South Africa, 2009–2014 Cohen, Adam L.; Sahr, Philip K.; Treurnicht, Florette; Walaza, Sibongile; Groome, Michelle J.; Kahn, Kathleen; Dawood, Halima; Variava, Ebrahim; Tempia, Stefano; Pretorius, Marthi; Moyes, Jocelyn; Olorunju, Steven A. S.; Malope-Kgokong, Babatyi; Kuonza, Lazarus; Wolter, Nicole; von Gottberg, Anne; Madhi, Shabir A.; Venter, Marietjie; Cohen, Cheryl 2015 2015-09-19 NONCOMM N PMC4630450 26566534.0 10.1093/ofid/ofv139 kc85pev4 0.309056 Choi_2017, Sun_H_2018, Fry_A_2007 Gamiño‐Arroyo_2016, Madhi_2003, Do_L_2016, Luchsinger_2012
24 Uddin_2018 Burden and Risk Factors for Coronavirus Infections in Infants in Rural Nepal Uddin, S M Iftekhar; Englund, Janet A; Kuypers, Jane Y; Chu, Helen Y; Steinhoff, Mark C; Khatry, Subarna K; LeClerq, Steve C; Tielsch, James M; Mullany, Luke C; Shrestha, Laxman; Katz, Joanne 2018 2018-11-15 COMM-USE N PMC6206108 29668900.0 10.1093/cid/ciy317 lt755fpa 0.308388 Choi_2017, Sun_H_2018, Fry_A_2007 Chu_H_2013, Gamiño‐Arroyo_2016, Munywoki_2015
25 Larkin_2014 Vitamin D Deficiency and Acute Lower Respiratory Infections in Children Younger Than 5 Years: Identification and Treatment Larkin, Allison; Lassetter, Jane 2014 2014-12-31 PMC N PMC7127565 25441970.0 10.1016/j.pedhc.2014.08.013 ke1l83wc 0.303853
26 Bhuiyan_2018 Role of viral and bacterial pathogens in causing pneumonia among Western Australian children: a case–control study protocol Bhuiyan, Mejbah Uddin; Snelling, Thomas L; West, Rachel; Lang, Jurissa; Rahman, Tasmina; Borland, Meredith L; Thornton, Ruth; Kirkham, Lea-Ann; Sikazwe, Chisha; Martin, Andrew C; Richmond, Peter C; Smith, David W; Jaffe, Adam; Blyth, Christopher C 2018 2018-03-16 None N PMC5857668 29549211.0 10.1136/bmjopen-2017-020646 w3rxdaii 0.301592 Baier_2018